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    115 repositories

    • openCyto

      Public
      A package that provides data analysis pipeline for flow cytometry.
      R
      •
      GNU Affero General Public License v3.0
      •29•77•6•12•Updated Nov 7, 2024Nov 7, 2024

    • flowCore

      Public
      Core flow cytometry infrastructure
      R
      •25•44•35•1•Updated Aug 22, 2024Aug 22, 2024

    • MIMOSA2

      Public
      Baseline Adjusted Positivity Calls for Intracellular Cytokine Staining Data
      R
      •2•0•0•0•Updated Aug 15, 2024Aug 15, 2024

    • cytolib

      Public
      c++ library for representing and interacting the gated cytometry data structure
      C++
      •
      GNU Affero General Public License v3.0
      •11•12•10•0•Updated Apr 26, 2024Apr 26, 2024

    • flowWorkspace

      Public
      flowWorkspace
      R
      •
      GNU Affero General Public License v3.0
      •21•45•48•1•Updated Mar 16, 2024Mar 16, 2024

    • ggcyto

      Public
      Visualize Cytometry data with ggplot2
      HTML
      •
      MIT License
      •13•56•21•0•Updated Mar 2, 2024Mar 2, 2024

    • CytoML

      Public
      A GatingML Interface for Cross Platform Cytometry Data Sharing
      HTML
      •
      GNU Affero General Public License v3.0
      •14•30•51•0•Updated Jan 17, 2024Jan 17, 2024

    • flowClust

      Public
      Bayesian flowClust
      R
      •8•9•9•0•Updated Jan 15, 2024Jan 15, 2024

    • cytoUtils

      Public
      Helper tools for cytometry
      C++
      •1•2•1•0•Updated Dec 19, 2023Dec 19, 2023

    • ImmuneSpaceR

      Public
      An R Interface to the ImmuneSpace database portal
      bioconductorimmunologylabkeyimmunespaceimmporthipc
      R
      •11•24•0•1•Updated Nov 28, 2023Nov 28, 2023

    • MAST

      Public
      Tools and methods for analysis of single cell assay data in R
      R
      •57•228•34•1•Updated Sep 27, 2023Sep 27, 2023

    • FAUST

      Public
      Full annotation using shape-constrained trees
      C++
      •
      GNU General Public License v3.0
      •5•25•4•7•Updated Sep 15, 2023Sep 15, 2023

    • flowStats

      Public
      flowStats: algorithms for flow cytometry data analysis using BioConductor tools
      R
      •10•15•18•1•Updated Jul 19, 2023Jul 19, 2023

    • RProtoBufLib

      Public
      bundled Protocol buffers library as an R package
      R
      •
      Other
      •3•3•6•0•Updated Jul 10, 2023Jul 10, 2023

    • cytoqc

      Public
      A Quality Control tool for cytometry
      R
      •
      Other
      •3•6•5•1•Updated Feb 8, 2023Feb 8, 2023

    • LabKeyModules

      Public
      LabKey Modules for ImmuneSpace
      labkeyimmunespace
      JavaScript
      •
      Artistic License 2.0
      •5•5•0•0•Updated Jan 25, 2023Jan 25, 2023

    • UITesting

      Public
      ImmuneSpace UI Testing
      saucelabsrseleniumimmunespace
      R
      •2•2•0•0•Updated Dec 14, 2022Dec 14, 2022

    • HIPCMatrix

      Public
      Utilities for processing and analyzing HIPC gene expression data in ImmuneSpace
      rna-seqmicroarrayimmunespaceimmporthipc
      R
      •1•1•0•0•Updated Dec 14, 2022Dec 14, 2022

    • ImmuneSpaceCron

      Public
      Tools and functions for generating useful artifacts for ImmuneSpace Reports and APIs
      immunespace
      R
      •1•0•0•0•Updated Dec 14, 2022Dec 14, 2022

    • ImmuneSpaceMaintenance

      Public
      Utility Package for ImmuneSpace Maintenance
      immunespace
      R
      •0•0•0•0•Updated Dec 13, 2022Dec 13, 2022

    • AnalyteExplorer

      Public
      Analyte Explorer Pre-processing Scripts
      immunespacehipc
      R
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Dec 13, 2022Dec 13, 2022

    • ImmuneSignatures

      Public
      HIPC ImmuneSignatures
      immunespaceimmunesignatureshipc
      HTML
      •4•1•2•0•Updated Dec 7, 2022Dec 7, 2022

    • ImmuneSignatures2

      Public
      HIPC ImmuneSignatures2
      immunespaceimmunesignatureshipc
      R
      •1•1•0•0•Updated Dec 5, 2022Dec 5, 2022

    • rcellontologymapping

      Public
      R interface to generate leukocyte cell classifications from cell surface markers using the decision tree from Maecker et al. (2012)
      Haskell
      •
      GNU Lesser General Public License v3.0
      •0•0•0•0•Updated Oct 5, 2022Oct 5, 2022

    • ImmPortR

      Public
      R wrapper around the ImmPort API and its download tool
      immport
      R
      •
      GNU General Public License v3.0
      •0•1•0•0•Updated Sep 1, 2022Sep 1, 2022

    • flowViz

      Public
      Visualization for flow cytometry
      R
      •0•9•3•0•Updated Aug 17, 2022Aug 17, 2022

    • ncdfFlow

      Public
      A package that provides ncdf based storage for flow cytometry data.
      R
      •7•2•3•1•Updated Jul 1, 2022Jul 1, 2022

    • COMPASS

      Public
      Combinatorial Polyfunctionality Analysis of Single Cells
      R
      •11•6•15•2•Updated Mar 22, 2022Mar 22, 2022

    • cytoverse.org

      Public
      HTML
      •0•1•0•0•Updated Mar 18, 2022Mar 18, 2022

    • covid19_sc

      Public
      Processing workflow for COVID-19 single cell data
      covid-19
      R
      •4•17•3•0•Updated Dec 23, 2021Dec 23, 2021