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    15 repositories

    • daphne_ecoli-diauxie

      Public
      Emergent sub-population behavior uncovered with a community dynamic metabolic model of Escherichia coli diauxic growth
      Python
      •1•4•0•4•Updated Jul 16, 2023Jul 16, 2023

    • npqmodel

      Public
      Non-photochemical quenching provides short-term light memory in plants: a mathematical model
      Python
      •
      Other
      •2•3•0•14•Updated Nov 22, 2022Nov 22, 2022

    • modelbase

      Public
      Aa free expandable Python package for building and analysing dynamic mathematical models of biological systems.
      pythonsystems-biologykinetic-modelingisotope-labeling-experiments
      2•0•0•0•Updated May 18, 2021May 18, 2021

    • photosynthesismodel

      Public
      Computational model of photosynthesis resulted from a merge of two previously published mathematical models of relevant subprocesses
      Jupyter Notebook
      •4•1•1•0•Updated Nov 23, 2018Nov 23, 2018

    • petc-modelbase

      Public
      Reconstruction of the mathematical model of the photosynthetic electron transport chain using modelbase package
      Jupyter Notebook
      •0•0•0•0•Updated Oct 13, 2018Oct 13, 2018

    • ppp-modelbase

      Public
      Labeling in the non-oxidative pentose phosphate pathway using modelbase
      Python
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Aug 23, 2018Aug 23, 2018

    • cbb-modelbase

      Public
      Modelbase implementation of the Poolman 2000 variant of the 1988 Pettersson CBB cycle model
      Jupyter Notebook
      •0•0•0•0•Updated Aug 20, 2018Aug 20, 2018

    • ModelHeatShock

      Public
      TeX
      •
      GNU General Public License v3.0
      •1•1•0•0•Updated Apr 5, 2018Apr 5, 2018

    • communityODE

      Public
      ODE model for P. tricornutum associated microbial community, can be generalized to any system
      Python
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Nov 28, 2017Nov 28, 2017

    • 16SV6-Sequence-Analysis

      Public
      Pipeline to process 16S (V6) sequence data coming from Ion-Torrent sequencer
      0•0•0•0•Updated Sep 29, 2017Sep 29, 2017

    • integraseModel

      Public
      MATLAB files to simulate in vitro experiments of Integrase with or without Reaction Directionality Factors (RDFs)
      MATLAB
      •
      GNU General Public License v2.0
      •0•0•0•0•Updated Nov 28, 2016Nov 28, 2016

    • histoneModel

      Public
      Model files to simulate our models on histone gene expression regulation during S-phase
      C
      •
      Other
      •0•0•0•0•Updated Jun 6, 2016Jun 6, 2016

    • networkgeneration

      Public
      Scripts by Steve Court to generate alternative network structures
      Java
      •
      Other
      •0•0•0•0•Updated Oct 14, 2015Oct 14, 2015

    • Paenibacillus

      Public
      Constraint-based model of Paenibacillus polymyxa ICGEB2008
      Python
      •0•0•0•0•Updated Sep 15, 2015Sep 15, 2015

    • petcmodel

      Public
      Model of the photosynthetic electron transport chain for Chlamydomonas
      Python
      •
      Other
      •1•3•1•1•Updated May 28, 2015May 28, 2015