MurrellGroup

All

60 repositories

CodonMolecularEvolution.jl
Public
Julia
•
MIT License
•1•2•5•24•Updated Jan 10, 2025Jan 10, 2025
MolecularEvolution.jl
Public
A Julia framework for developing phylogenetic models
Julia
•
MIT License
•4•11•10•7•Updated Jan 8, 2025Jan 8, 2025
InvariantPointAttention.jl
Public
Julia implementation of AlphaFold 2's Invariant Point Attention
Julia
•
MIT License
•2•5•1•0•Updated Jan 2, 2025Jan 2, 2025
Jjama3.jl
Public
Julia
•
MIT License
•1•28•3•0•Updated Dec 30, 2024Dec 30, 2024
HuggingFaceTransformers.jl
Public
Julia
•
MIT License
•0•0•0•0•Updated Dec 29, 2024Dec 29, 2024
Zygote.jl
Public
21st century AD
Julia
•
Other
•212•0•0•0•Updated Dec 29, 2024Dec 29, 2024
HuggingFaceTokenizers.jl
Public
Julia wrapper of a Python wrapper of a Rust library
Julia
•
MIT License
•0•4•2•0•Updated Dec 27, 2024Dec 27, 2024
Onion.jl
Public
It has layers.
0•0•0•0•Updated Dec 24, 2024Dec 24, 2024
BatchedTransformations.jl
Public
Julia
•
MIT License
•0•0•0•0•Updated Dec 24, 2024Dec 24, 2024
ColabMolecularEvolution
Public
A collection of Google Colab notebooks for phylogenetic models
Jupyter Notebook
•
MIT License
•0•0•0•0•Updated Dec 24, 2024Dec 24, 2024
CannotWaitForTheseOptimisers.jl
Public
Julia
•
MIT License
•0•1•0•0•Updated Dec 23, 2024Dec 23, 2024
ProteinChains.jl
Public
Julia
•
MIT License
•0•2•1•0•Updated Dec 22, 2024Dec 22, 2024
PORPIDpipeline
Public
A pipeline for long-read UMI/PID sequencing of HIV amplicons.
Julia
•1•0•0•0•Updated Dec 22, 2024Dec 22, 2024
Optimisers.jl
Public
Optimisers.jl defines many standard optimisers and utilities for learning loops.
Julia
•
MIT License
•24•0•0•0•Updated Dec 21, 2024Dec 21, 2024
RandomFeatureMaps.jl
Public
Julia
•
MIT License
•0•0•0•0•Updated Dec 21, 2024Dec 21, 2024
LowRankLayers.jl
Public
Julia
•
MIT License
•0•0•0•0•Updated Dec 21, 2024Dec 21, 2024
lineages
Public
Results from a model of global SARS-CoV-2 lineage competition
1•36•2•1•Updated Dec 14, 2024Dec 14, 2024
LogitSamplers.jl
Public
Julia
•
MIT License
•0•0•1•0•Updated Dec 1, 2024Dec 1, 2024
CHMMera.jl
Public
Julia
•
MIT License
•0•3•1•0•Updated Nov 30, 2024Nov 30, 2024
ProtPlot.jl
Public
Protein ribbon plots implemented in Julia using Makie
julia plot protein ribbon makie
Julia
•
MIT License
•1•13•1•0•Updated Nov 24, 2024Nov 24, 2024
ColabMPNN.jl
Public
Julia wrapper for the MPNN submodule in the ColabDesign Python package: https://github.com/sokrypton/ColabDesign
Julia
•
MIT License
•0•0•0•1•Updated Nov 24, 2024Nov 24, 2024
LearningSchedules.jl
Public
Simple Learning Schedules in Julia
Julia
•
MIT License
•0•0•0•1•Updated Nov 18, 2024Nov 18, 2024
Conflux.jl
Public
Single-node data parallelism in Julia with CUDA
flux julia cuda data-parallelism nccl
Julia
•
MIT License
•0•2•0•1•Updated Nov 18, 2024Nov 18, 2024
AssigningSecondaryStructure.jl
Public
Simplified DSSP algorithm implemented in Julia
julia protein secondary-structure dssp
Julia
•
MIT License
•0•5•0•0•Updated Nov 7, 2024Nov 7, 2024
Backboner.jl
Public
Molecular backbone geometry utilities
julia backbone protein knot dihedral
Julia
•
MIT License
•2•3•0•0•Updated Nov 5, 2024Nov 5, 2024
MessagePassingIPA.jl
Public
Julia
•
MIT License
•0•1•1•1•Updated Sep 18, 2024Sep 18, 2024
WebWidgets
Public
HTML
•
MIT License
•0•0•0•0•Updated Sep 8, 2024Sep 8, 2024
CUDA.jl
Public
CUDA programming in Julia.
Julia
•
Other
•232•0•0•0•Updated Aug 19, 2024Aug 19, 2024
smoothFUBAR
Public
Julia
•
MIT License
•0•0•0•0•Updated Jul 26, 2024Jul 26, 2024
Diffusions.jl
Public
Julia
•
MIT License
•2•5•5•6•Updated Jul 25, 2024Jul 25, 2024