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    72 repositories

    • alabaster.matrix

      Public
      Save matrices, arrays and similar objects to file
      R
      •
      Other
      •0•0•1•0•Updated Nov 30, 2024Nov 30, 2024

    • SewerRat-R

      Public
      R client for the SewerRat REST API
      R
      •
      Other
      •0•0•0•0•Updated Nov 25, 2024Nov 25, 2024

    • SewerRat-py

      Public
      Python client for the SewerRat API
      Python
      •
      MIT License
      •0•0•0•0•Updated Nov 25, 2024Nov 25, 2024

    • alabaster.base

      Public
      Base methods for the alabaster client framework
      R
      •
      Other
      •0•3•0•0•Updated Nov 11, 2024Nov 11, 2024

    • alabaster.spatial

      Public
      Save and load SpatialExperiment objects to file
      R
      •
      Other
      •0•2•1•0•Updated Nov 9, 2024Nov 9, 2024

    • takane

      Public
      Validators for ArtifactDB file formats.
      C++
      •
      MIT License
      •0•0•2•0•Updated Nov 9, 2024Nov 9, 2024

    • SewerRat

      Public
      Indexing user-defined directories on a shared filesystem
      Go
      •
      MIT License
      •0•0•0•0•Updated Nov 5, 2024Nov 5, 2024

    • sayoko

      Public
      Integrate gobbler projects into the SewerRat registry
      Go
      •
      MIT License
      •0•0•0•0•Updated Oct 29, 2024Oct 29, 2024

    • gypsum-backup

      Public
      Backup scripts for the gypsum data store
      JavaScript
      •
      MIT License
      •0•0•0•0•Updated Oct 28, 2024Oct 28, 2024

    • alabaster.mae

      Public
      Save and load MultiAssayExperiments from file
      R
      •
      Other
      •0•0•0•0•Updated Oct 28, 2024Oct 28, 2024

    • gobbler-R

      Public
      R client for the gobbler service
      R
      •
      Other
      •0•0•0•0•Updated Oct 28, 2024Oct 28, 2024

    • gobbler-py

      Public
      Python client for the gobbler
      Python
      •
      MIT License
      •0•0•0•0•Updated Oct 28, 2024Oct 28, 2024

    • dolomite-sce

      Public
      Save and load SingleCellExperiments from file.
      Python
      •
      MIT License
      •0•0•0•0•Updated Oct 23, 2024Oct 23, 2024

    • dolomite-se

      Public
      Save and load SummarizedExperiments in Python
      Python
      •
      MIT License
      •0•0•0•0•Updated Oct 23, 2024Oct 23, 2024

    • dolomite-matrix

      Public
      Save and load matrices in Python
      Python
      •
      MIT License
      •0•0•0•0•Updated Oct 23, 2024Oct 23, 2024

    • dolomite-base

      Public
      Save Bioconductor objects in Python.
      Python
      •
      MIT License
      •0•2•1•0•Updated Oct 23, 2024Oct 23, 2024

    • gobbler

      Public
      Gobbling up files on a shared filesystem
      Go
      •
      MIT License
      •0•0•0•0•Updated Oct 21, 2024Oct 21, 2024

    • alabaster.sce

      Public
      Save and load SingleCellExperiments to file
      R
      •
      Other
      •0•1•1•0•Updated Oct 16, 2024Oct 16, 2024

    • alabaster.se

      Public
      Save and load SummarizedExperiment objects to file
      R
      •
      Other
      •0•1•0•0•Updated Oct 16, 2024Oct 16, 2024

    • millijson

      Public
      Yet another JSON parsing library for C++
      C++
      •
      MIT License
      •0•0•0•0•Updated Sep 23, 2024Sep 23, 2024

    • bioconductor-metadata-index

      Public
      SQLite index for Bioconductor-related metadata in gypsum
      JavaScript
      •
      MIT License
      •0•0•0•0•Updated Sep 16, 2024Sep 16, 2024

    • chihaya-R

      Public
      Save delayed operations for portable recovery in other analysis environments.
      C++
      •0•0•0•0•Updated Sep 16, 2024Sep 16, 2024

    • alabaster.ranges

      Public
      Save and load genomic ranges to file
      R
      •
      MIT License
      •0•0•0•0•Updated Jun 21, 2024Jun 21, 2024

    • gypsum-R

      Public
      R client for the gypsum REST API
      R
      •
      MIT License
      •0•0•0•0•Updated Jun 20, 2024Jun 20, 2024

    • gypsum-metadata-index

      Public
      Create metadata indices from gypsum-compliant storage based on SQLite
      JavaScript
      •
      MIT License
      •0•0•0•0•Updated Jun 19, 2024Jun 19, 2024

    • gypsum-worker

      Public
      Bare-bones ArtifactDB API with Cloudflare
      JavaScript
      •
      MIT License
      •2•1•2•0•Updated May 31, 2024May 31, 2024

    • gypsum-py

      Public
      Python client to gpysum
      Python
      •
      MIT License
      •0•0•1•0•Updated May 28, 2024May 28, 2024

    • dolomite-mae

      Public
      Python
      •
      MIT License
      •0•0•0•0•Updated May 21, 2024May 21, 2024

    • dolomite-ranges

      Public
      Save and load genomic ranges in Python
      Python
      •
      MIT License
      •0•0•0•0•Updated May 20, 2024May 20, 2024

    • uzuki2

      Public
      R lists to HDF5... or JSON, I suppose
      C++
      •
      MIT License
      •0•1•1•0•Updated Apr 29, 2024Apr 29, 2024