auto_install_1604.sh

#!/bin/bash

# ===============================================================================
# File:  auto_install_1604.sh
#
# Updated 8/20/2018 by Chase Murray
#
# NOTES:
#	* This script installs the "base" software for students in the lab running
#	  Ubuntu 16.04. 
#	* It also installs ROS Kinetic on Ubuntu 16.04.
#
# INSTALLATION INSTRUCTIONS: 
#	1) Download this script to the location of your choice.  ~/Downloads is fine.
#	2) Change directories to the location where this script is saved.
#	3) chmod +x auto_install_1604.sh
#	4) ./auto_install_1604.sh
#
# *****************CAUTION***********************
#	* This script will OVERWRITE anything in the following directories:
#		- ~/catkin_ws
#		- ~/mavlink
#		- ~/dronekit-python
#		- ~/dronekit-sitl
#		- ~/MAVProxy
#		- ~/jMAVSim
#		- ~/cesium
#		- ~/qgroundcontrol
#		- ~/pyaudio
#		- ~/blather
#		- ~/.config/blather/
#	* MAKE. SURE. YOU. HAVE. BACKUPS.
# ===============================================================================

# CHANGELOG:
# 	Replaced "indigo" with "kinetic"
#	Replaced "python-wxgtk2.8" with "python-wxgtk3.0"
#	Replaced "python-gst0.10" with "python-gst-1.0"
#	Replaced "gstreamer0.10-pocketsphinx" with "gstreamer1.0-pocketsphinx"
#	Added "pip install --upgrade pip"
#	Replaced "openjdk-7-jdk" with "openjdk-8-jdk"
#	10/31/17:
#		No longer using cesium-3d-tiles
#		Pulling Cesium directly from their releases page.
#	12/22/17:
#		Added pyserial.  Should be v3.4 or above now.
#	2/2/18:
#		Added -H flag for pip installs
#   3/10/18:
#		Added Python virtual environments
#		Removed anything involving "sudo" and "pip".  Pip should be run at the user level within a virtualenv.
#			One exception:  We sudo pip to install virtualenv and virtualenvwrapper	
#		Added pgRouting installation
#		Modified version of Cesium -- FIXME
#	3/16/18:
#		Added R/RStudio
#	3/26/18:
# 		Added retext, OCR, TeXstudio, Sublime Text, Chrome, and QGIS
#	3/28/18:
#		Hard-coded xenial (replaced lsb_release)
#	3/29/18:
#		Fixed QGIS installation.
#		Fixed psql installation.
#	8/20/18:
#		Using latest version of node.js
#		pymavlink is no longer available from mavlink repo.  
#			I tried using ArduPilot repo (forked to our repo), but that failed.
#			Now using sudo pip.
#		Added installation of osrm-backend

set -e

# Store the present working directory.
# We'll use this later when copying psql config file.
myPWD=${PWD}

# Create the user's "Projects" directory:
mkdir -p ${HOME}/Projects

# Copy wallpaper to a new "olab" directory:
mkdir -p ${HOME}/olab
cp ${myPWD}/optimator_lab_transparency_small.png ${HOME}/olab/optimator_lab_transparency_small.png

# Prelims
cd ${HOME}

sudo apt-get update
sudo apt-get upgrade

# --------------------------------------
# Added 3/10/18:
sudo apt-get --yes install cmake unzip pkg-config
sudo apt-get --yes install libjpeg-dev libtiff5-dev libjasper-dev libpng12-dev
sudo apt-get --yes install libavcodec-dev libavformat-dev libswscale-dev libv4l-dev
sudo apt-get --yes install libxvidcore-dev libx264-dev
sudo apt-get --yes install libgtk-3-dev
sudo apt-get --yes install libhdf5-serial-dev graphviz
sudo apt-get --yes install libopenblas-dev libatlas-base-dev gfortran
sudo apt-get --yes install python-tk python3-tk python-imaging-tk
sudo apt-get --yes install python2.7-dev python3-dev
sudo apt-get --yes install python-qt4
# --------------------------------------

# SHOULD WE INCLUDE ALL OF THE FOLLOWING?
# Or, should we be using pip for these?
# sudo apt-get --yes install python-dev python-opencv python-wxgtk3.0 python-pip python-matplotlib python-pygame python-lxml
sudo apt-get --yes install python-dev python-wxgtk3.0 python-lxml

# SHOULD WE INCLUDE ALL OF THE FOLLOWING?
# Or, should we be using pip for these?
sudo apt-get --yes install python python-all-dev build-essential swig git
sudo apt-get --yes install portaudio19-dev 
sudo apt-get --yes install libpulse-dev
sudo apt-get --yes install python-gst-1.0
sudo apt-get --yes install gstreamer1.0-pocketsphinx

# Popular applications for students in the lab:
sudo apt-get --yes install chromium-browser
sudo apt-get --yes install filezilla
sudo apt-get --yes install geany
sudo apt-get --yes install gimp
sudo apt-get --yes install meld
sudo apt-get --yes install kazam
sudo apt-get --yes install retext

# Python OCR
sudo apt-get --yes install tesseract-ocr

# TeXstudio
# Open with "texstudio"
sudo apt-get update
sudo apt-get --yes install texlive-full
sudo apt-get --yes install texstudio

# Sublime text
# https://www.sublimetext.com/docs/3/linux_repositories.html
wget -qO - https://download.sublimetext.com/sublimehq-pub.gpg | sudo apt-key add -
sudo apt-get --yes install apt-transport-https
echo "deb https://download.sublimetext.com/ apt/stable/" | sudo tee /etc/apt/sources.list.d/sublime-text.list
sudo apt-get update
sudo apt-get --yes install sublime-text

# Chrome
# https://askubuntu.com/questions/79280/how-to-install-chrome-browser-properly-via-command-line
sudo apt-get --yes install libxss1 libappindicator1 libindicator7
wget https://dl.google.com/linux/direct/google-chrome-stable_current_amd64.deb
sudo dpkg -i google-chrome*.deb
# If error messages pop up after running the command sudo dpkg -i google-chrome*.deb then run the command
# sudo apt-get install -f
# and then re-run the previous command. The error messages mentioned should include something similar to

# QGIS
# https://qgis.org/en/site/forusers/alldownloads.html#debian-ubuntu
sudo apt-key adv --keyserver keyserver.ubuntu.com --recv-key CAEB3DC3BDF7FB45
echo "deb https://qgis.org/debian xenial main" | sudo tee -a /etc/apt/sources.list
echo "deb-src https://qgis.org/debian xenial main" | sudo tee -a /etc/apt/sources.list
sudo apt-get update
sudo apt-get --yes install qgis python-qgis qgis-plugin-grass


# R and RStudio:
# See https://www.r-bloggers.com/how-to-install-r-on-linux-ubuntu-16-04-xenial-xerus/
# sudo echo "deb http://cran.rstudio.com/bin/linux/ubuntu $(lsb_release -sc)/" | sudo tee -a /etc/apt/sources.list
sudo echo "deb http://cran.rstudio.com/bin/linux/ubuntu xenial/" | sudo tee -a /etc/apt/sources.list
gpg --keyserver keyserver.ubuntu.com --recv-key E084DAB9
gpg -a --export E084DAB9 | sudo apt-key add -
sudo apt-get update
sudo apt-get --yes install r-base r-base-dev
sudo apt-get --yes install gdebi-core

# FIXME:  This is for 16.04 (xenial) only.
# See https://www.rstudio.com/products/rstudio/download/#download for the latest versions of RStudio.
wget https://download1.rstudio.org/rstudio-xenial-1.1.442-amd64.deb
sudo gdebi -n rstudio-xenial-1.1.442-amd64.deb
rm rstudio-xenial-1.1.442-amd64.deb



# FIXME -- Should we remove (uninstall) old versions of pip?
sudo apt-get purge --auto-remove python-pip	

# Install pip:
wget https://bootstrap.pypa.io/get-pip.py
sudo python get-pip.py
sudo python3 get-pip.py

# Install virtualenv and virtualenvwrapper:
sudo pip install virtualenv virtualenvwrapper
sudo rm -rf ${HOME}/.cache/pip get-pip.py


# Configure virtualenv and virtualenvwrapper in your .bashrc profile:
echo "" >> ${HOME}/.bashrc
echo "# Configure virtualenv and virtualenvwrapper:" >> ${HOME}/.bashrc
echo "export WORKON_HOME=$HOME/.virtualenvs" >> ${HOME}/.bashrc
echo "export VIRTUALENVWRAPPER_PYTHON=/usr/bin/python3" >> ${HOME}/.bashrc
echo "source /usr/local/bin/virtualenvwrapper.sh" >> ${HOME}/.bashrc
source ${HOME}/.bashrc

sudo apt-get clean

# -----------------------------------------
# 1) ROS Kinetic
#sudo sh -c 'echo "deb http://packages.ros.org/ros/ubuntu $(lsb_release -sc) main" > /etc/apt/sources.list.d/ros-latest.list'
sudo sh -c 'echo "deb http://packages.ros.org/ros/ubuntu xenial main" > /etc/apt/sources.list.d/ros-latest.list'
		
sudo apt-key adv --keyserver hkp://ha.pool.sks-keyservers.net:80 --recv-key 421C365BD9FF1F717815A3895523BAEEB01FA116
	
sudo apt-get update

sudo apt-get --yes install ros-kinetic-desktop-full

sudo rosdep init
rosdep update
	
echo "" >> ${HOME}/.bashrc
echo "# Set ROS Environment Variables:" >> ${HOME}/.bashrc
echo "source /opt/ros/kinetic/setup.bash" >> ${HOME}/.bashrc
source /opt/ros/kinetic/setup.bash
source ${HOME}/.bashrc

sudo apt-get --yes install python-rosinstall
		
# Create catkin workspace:
mkdir -p ${HOME}/catkin_ws/src
	
# Build the workspace:
cd ${HOME}/catkin_ws
catkin_make	

# Edit .bashrc again:
# Set ROS Environment Variables:
echo "source ~/catkin_ws/devel/setup.bash" >> ${HOME}/.bashrc
source ${HOME}/catkin_ws/devel/setup.bash
source ${HOME}/.bashrc		

sudo apt-get clean

# -----------------------------------------
# 2) Rosbridge
cd ${HOME}
sudo apt-get --yes install ros-kinetic-rosbridge-suite


# -----------------------------------------
# 3) pymavlink
# REMOVED 8/20/18:
# echo "" >> ${HOME}/.bashrc
# echo "# Add mavlink to PYTHONPATH" >> ${HOME}/.bashrc
# echo "export PYTHONPATH=\${PYTHONPATH}:\$HOME/mavlink" >> ${HOME}/.bashrc
# source ${HOME}/.bashrc

sudo apt-get --yes install python-future

# REMOVED 8/20/18:
# cd ${HOME}
# sudo rm -rf ${HOME}/mavlink
# git clone git://github.com/optimatorlab/mavlink.git --recursive
# cd ${HOME}/mavlink/pymavlink
# sudo python setup.py install

# TRIED 8/20/18, but FAILED:
# cd ${HOME}
# sudo rm -rf ${HOME}/pymavlink
# git clone git://github.com/optimatorlab/pymavlink.git --recursive
# cd ${HOME}/pymavlink
# sudo python setup.py install

# Added 8/20/18:
sudo pip2 install -U pymavlink

sudo apt-get clean

# -----------------------------------------
# 4) MAVproxy 
#	https://github.com/Dronecode/MAVProxy
#	http://ardupilot.github.io/MAVProxy/html/getting_started/download_and_installation.html
# OLD: sudo pip install MAVProxy
cd ${HOME}
sudo rm -rf ${HOME}/MAVProxy
git clone https://github.com/optimatorlab/MAVProxy
cd ${HOME}/MAVProxy
sudo python setup.py install
		
sudo adduser ${USER} dialout

# If you have trouble connecting Pixhawk, try the following:
sudo usermod -a -G dialout ${USER}

sudo apt-get clean

# -----------------------------------------
# 5) Dronekit
# http://python.dronekit.io/guide/quick_start.html
# OLD:  sudo pip install dronekit	
cd ${HOME}
sudo rm -rf ${HOME}/dronekit-python
git clone https://github.com/optimatorlab/dronekit-python
cd ${HOME}/dronekit-python
sudo python setup.py build
sudo python setup.py install
				
# OLD:  sudo pip install dronekit-sitl
cd ${HOME}
sudo rm -rf ${HOME}/dronekit-sitl
git clone https://github.com/optimatorlab/dronekit-sitl
cd ${HOME}/dronekit-sitl
sudo python setup.py build
sudo python setup.py install


sudo apt-get clean

# -----------------------------------------
# 6) Cesium -- 1.38 (Released Oct. 2, 2017):
# FIXME -- 1.43 is now available (Released March 2018)
# Delete the cesium directory (if it exists)
sudo rm -rf ${HOME}/cesium

# Copy/install cesium:
mkdir ${HOME}/cesium
cd ${HOME}/cesium
#wget https://github.com/AnalyticalGraphicsInc/cesium/releases/download/1.38/Cesium-1.38.zip
#unzip Cesium-1.38.zip
wget https://github.com/AnalyticalGraphicsInc/cesium/releases/download/1.43/Cesium-1.43.zip
unzip Cesium-1.43.zip

sudo apt-get update

cd ${HOME}/cesium
# curl -sL https://deb.nodesource.com/setup_4.x | sudo -E bash -
curl -sL https://deb.nodesource.com/setup_8.x | sudo -E bash -
sudo apt-get install -y nodejs
npm install

cd ${HOME}/cesium
git clone https://github.com/optimatorlab/Chart.js.git
# This will save a directory named ~/cesium/Chart.js
npm install chart.js --save 
# This will install/save to ~/cesium/node_modules/chart.js
rm -r ${HOME}/cesium/Chart.js

cd ${HOME}/cesium
git clone https://github.com/optimatorlab/dials_gauges.git


# ===============================================================================================
# 6b) Cesium -- 3D Tiles Branch:  https://github.com/optimatorlab/cesium/tree/3d-tiles
#cd ${HOME}
#git clone -b 3d-tiles --single-branch git://github.com/optimatorlab/cesium cesium-3d-tiles
#
#cd ${HOME}/cesium-3d-tiles
#npm install
#npm run build
#npm run minifyRelease
#
#cd ${HOME}/cesium-3d-tiles
#git clone https://github.com/optimatorlab/Chart.js.git
## This will save a directory named ~/cesium-3d-tiles/Chart.js
#npm install chart.js --save 
## This will install/save to ~/cesium-3d-tiles/node_modules/chart.js
#rm -r ${HOME}/cesium-3d-tiles/Chart.js
#
#cd ${HOME}/cesium-3d-tiles
#git clone https://github.com/optimatorlab/dials_gauges.git
# ===============================================================================================

sudo apt-get clean

# -----------------------------------------
# 7) jMAVsim
# Install Java SDK (v1.7.0_95):
sudo apt-get --yes install openjdk-8-jdk

# Install ant (v1.9.3):
sudo apt-get --yes install ant

# Get jMAVSim
cd ${HOME} 
sudo rm -rf ${HOME}/jMAVSim
git clone https://github.com/optimatorlab/jMAVSim
cd ${HOME}/jMAVSim
git submodule init
git submodule update
				
# Compile jMAVSim:
cd ${HOME}/jMAVSim
ant

# modemmanager interferes with any non-modems and should be removed.
sudo apt-get remove modemmanager 


# -----------------------------------------
# 8) QGroundControl
#
#
#	FIXME!!!!
#
#
#


# -----------------------------------------
# 9) APM Mission Planner
# FIXME
# See http://ardupilot.org/planner2/docs/installation-for-linux.html


# -----------------------------------------
# 10) pgRouting


# FIXME -- NOT SURE WHICH FILE IS CORRECT:
sudo sh -c 'echo "deb http://apt.postgresql.org/pub/repos/apt/ xenial-pgdg main" > /etc/apt/sources.list.d/pgdg.list'
# sudo sh -c 'echo "deb http://apt.postgresql.org/pub/repos/apt/ $(lsb_release -cs)-pgdg main" > /etc/apt/sources.list.d/pgdg.list'
# sudo sh -c 'echo "deb http://apt.postgresql.org/pub/repos/apt/ $(lsb_release -cs)-pgdg main" > /etc/apt/sources.list'

wget --quiet -O - http://apt.postgresql.org/pub/repos/apt/ACCC4CF8.asc | sudo apt-key add -
sudo apt-get update
sudo apt-get --yes install postgresql-9.5-postgis-2.2 pgadmin3 postgresql-contrib-9.5
sudo apt-get --yes install postgresql-9.5-pgrouting

sudo apt-add-repository -y ppa:georepublic/pgrouting
sudo apt-get update
sudo apt-get --yes install osm2pgrouting

# Set password:
sudo -u postgres psql -c "ALTER USER postgres PASSWORD 'postgres';"

# Make a backup of `pg_hba.conf`:
sudo mv /etc/postgresql/9.5/main/pg_hba.conf /etc/postgresql/9.5/main/pg_hba.conf.bak

# Replace `pg_hba.conf` with the version downloaded from github:
# FIXME -- UPLOAD A CONFIG FILE FOR 9.5
cd ${HOME}
sudo cp ${myPWD}/pg_hba.conf /etc/postgresql/9.5/main/pg_hba.conf

# Ensure proper permissions and ownership:
# -rw-r----- 1 postgres postgres  4651 Nov 27  2016 pg_hba.conf
sudo chown postgres:postgres /etc/postgresql/9.5/main/pg_hba.conf
sudo chmod 0640 /etc/postgresql/9.5/main/pg_hba.conf

# Restart the database service:
sudo service postgresql restart
sleep 15s

# Create a "user" role on psql:
# hostname:port:database:username:password
# echo "localhost:*:postgres:postgres" >> ${HOME}/.pgpass
# chmod 0600 ${HOME}/.pgpass
sudo PGPASSWORD="postgres" -u postgres psql -c 'CREATE ROLE "user" SUPERUSER LOGIN;'
# rm ${HOME}/.pgpass

# At this point, a role named "user" is created, but there is no database named "user". So, when we write `psql -U user`, it tries to connect to DB "user" (which doesn't exist) through role "user". 
#
# Instead of doing this, write `psql -U user postgres`. This will connect to DB "postgres" through role "user".  To avoid writing `psql -U user postgres` everytime we want to login through "user" in the future, we will create a DB named "user". After that, we can write `psql -U user` to login into DB "user" through role "user".
psql -U user -d postgres -c 'CREATE DATABASE "user";'


# ---------------------------------
# 11) Speech Recognition
sudo apt-get update

# Install espeak
cd ${HOME}
sudo apt-get --yes install espeak
sudo apt-get --yes install mbrola
sudo apt-get --yes install mbrola-us1
sudo apt-get --yes install mbrola-us2
# When giving commands in the terminal window:
# espeak –v mb-us1 –s 180 –p 30 “<insert text to be read aloud>”


# Install pyaudio
cd ${HOME}
sudo rm -rf ${HOME}/pyaudio
git clone https://github.com/optimatorlab/pyaudio.git
cd ${HOME}/pyaudio
sudo python setup.py install


# Install pocketsphinx
# OLD:
# 	cd ${HOME}
# 	sudo -H pip install pocketsphinx
# NEW:
#	pip install pocketsphinx 		-- from within virtualenv

# Install SpeechRecognition 3.4.6
# OLD:
#	cd ${HOME}
# 	sudo -H pip install SpeechRecognition
# NEW:
#	pip install SpeechRecognition	-- from within virtualenv


# Blather -- Originally from https://github.com/ajbogh/blather
cd ${HOME}
sudo rm -rf ${HOME}/blather
git clone https://github.com/optimatorlab/blather.git

mkdir ${HOME}/.config/blather
mkdir ${HOME}/.config/blather/language
mkdir ${HOME}/.config/blather/plugins

cd ${HOME}/blather/config/blather
mv ${HOME}/blather/config/blather/commands.conf ${HOME}/.config/blather/commands.conf
mv ${HOME}/blather/config/blather/sentences.corpus ${HOME}/.config/blather/sentences.corpus

cd ${HOME}/blather/config/blather/language
mv ${HOME}/blather/config/blather/language/lm ${HOME}/.config/blather/language/lm
mv ${HOME}/blather/config/blather/language/dic ${HOME}/.config/blather/language/dic

cd ${HOME}/blather/config/blather/plugins
mv ${HOME}/blather/config/blather/plugins/thunderbird.sh ${HOME}/.config/blather/plugins/thunderbird.sh


# --------------------------------------------
# Added 8/20/18
# OSRM Backend
# https://github.com/Project-OSRM/osrm-backend/wiki/Running-OSRM
# https://www.digitalocean.com/community/tutorials/how-to-set-up-an-osrm-server-on-ubuntu-14-04

sudo apt-get update

sudo apt-get install build-essential
sudo apt-get install cmake
sudo apt-get install pkg-config
sudo apt-get install libbz2-dev
sudo apt-get install libxml2-dev
sudo apt-get install libzip-dev
sudo apt-get install libboost-all-dev
sudo apt-get install lua5.2
sudo apt-get install liblua5.2-dev
sudo apt-get install libtbb-dev

cd ${HOME}
git clone https://github.com/Project-OSRM/osrm-backend.git
cd osrm-backend

mkdir -p build
cd build
cmake ..
cmake --build .
sudo cmake --build . --target install



echo "Installation Complete."
echo "Reboot your machine before running the software."