From d55b99574c232536541220abce69d5f877609f71 Mon Sep 17 00:00:00 2001
From: olive004 <olivia.gallup@gmail.com>
Date: Fri, 8 Nov 2024 19:13:35 +0000
Subject: [PATCH] moving results

---
 notebooks/23_Monte_Carlo_adaptability_2.ipynb |  2 +-
 .../23_Monte_Carlo_adaptability_2_large.ipynb |  4 +-
 notebooks/25_classical_synbio_circuits.ipynb  | 46 -------------------
 .../23_Monte_Carlo_adaptability.csv           |  0
 4 files changed, 3 insertions(+), 49 deletions(-)
 delete mode 100644 notebooks/25_classical_synbio_circuits.ipynb
 rename notebooks/{ => results/23_Monte_Carlo_adaptability_2}/23_Monte_Carlo_adaptability.csv (100%)

diff --git a/notebooks/23_Monte_Carlo_adaptability_2.ipynb b/notebooks/23_Monte_Carlo_adaptability_2.ipynb
index c64ae187..378ce122 100644
--- a/notebooks/23_Monte_Carlo_adaptability_2.ipynb
+++ b/notebooks/23_Monte_Carlo_adaptability_2.ipynb
@@ -2241,7 +2241,7 @@
    "name": "python",
    "nbconvert_exporter": "python",
    "pygments_lexer": "ipython3",
-   "version": "3.8.10"
+   "version": "3.11.10"
   }
  },
  "nbformat": 4,
diff --git a/notebooks/23_Monte_Carlo_adaptability_2_large.ipynb b/notebooks/23_Monte_Carlo_adaptability_2_large.ipynb
index 4833e2fc..fe3c9b0d 100644
--- a/notebooks/23_Monte_Carlo_adaptability_2_large.ipynb
+++ b/notebooks/23_Monte_Carlo_adaptability_2_large.ipynb
@@ -12853,7 +12853,7 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 12,
+   "execution_count": null,
    "metadata": {
     "execution": {
      "iopub.execute_input": "2024-11-07T05:26:15.713121Z",
@@ -12864,7 +12864,7 @@
    },
    "outputs": [],
    "source": [
-    "d.sort_values(by='Adaptability', ascending=False).to_csv('23_Monte_Carlo_adaptability.csv', index=False)"
+    "d.sort_values(by='Adaptability', ascending=False).to_csv('results/23_Monte_Carlo_adaptability_2/all_circuits.csv', index=False)"
    ]
   },
   {
diff --git a/notebooks/25_classical_synbio_circuits.ipynb b/notebooks/25_classical_synbio_circuits.ipynb
deleted file mode 100644
index e5a002b0..00000000
--- a/notebooks/25_classical_synbio_circuits.ipynb
+++ /dev/null
@@ -1,46 +0,0 @@
-{
- "cells": [
-  {
-   "cell_type": "code",
-   "execution_count": null,
-   "metadata": {},
-   "outputs": [],
-   "source": [
-    "%load_ext autoreload\n",
-    "%autoreload 2"
-   ]
-  },
-  {
-   "cell_type": "markdown",
-   "metadata": {},
-   "source": [
-    "# Comparison between RNA circuits and classical, activation / repression circuits\n",
-    "\n",
-    "RNA circuits can only bind to each other. Does this mean that all RNAs are essentially repressing each other indirectly? "
-   ]
-  },
-  {
-   "cell_type": "markdown",
-   "metadata": {},
-   "source": [
-    "# Imports"
-   ]
-  },
-  {
-   "cell_type": "code",
-   "execution_count": null,
-   "metadata": {},
-   "outputs": [],
-   "source": [
-    "forward_rates = "
-   ]
-  }
- ],
- "metadata": {
-  "language_info": {
-   "name": "python"
-  }
- },
- "nbformat": 4,
- "nbformat_minor": 2
-}
diff --git a/notebooks/23_Monte_Carlo_adaptability.csv b/notebooks/results/23_Monte_Carlo_adaptability_2/23_Monte_Carlo_adaptability.csv
similarity index 100%
rename from notebooks/23_Monte_Carlo_adaptability.csv
rename to notebooks/results/23_Monte_Carlo_adaptability_2/23_Monte_Carlo_adaptability.csv