README

Uberon References

The ontology http://purl.obolibrary.org/obo/uberon/references.owl contains embedded documentation, including design decision documents and references to external documentation.

The directory contains the extracted contents of these references.

Ontology editors, see the file README-editors.md

If you wish to make comments on any of the documents here, please use either the obo-anatomy mailing list or the Uberon tracker:

• https://github.com/cmungall/uberon/issues

Contents

• biological_modeling
  • 0000001 Epithelial configurations (initial draft)
  • 0000003 Appendages and appendicular skeleton (intermediate draft)
  • 0000006 Ontology schema for representing the cephalic region and postcranial axial skeletal system (initial draft)
  • 0000010 Extraembryonic membranes (initial draft)
  • 0000019 Autopod subdivisions (initial draft)
• description_of_a_meeting
  • 0000002 Phenotype RCN Neural Crest Meeting (initial draft)
  • 0000008 Obo-anatomy call, 2012-08-17 (published)
• metadata_description
  • 0000000 UDoc - the Uberon documentation system (intermediate draft)
  • 0000021 Depictions of anatomical structures (intermediate draft)
  • 0000030 Continuous integration ()
  • 0000038 Provenance of relationships in Uberon ()
• ontology_design_pattern
  • 0000004 Mereotopological relations (initial draft)
  • 0000009 Representing individual endochondral elements (intermediate draft)
  • 0000014 Representation of paired structures (intermediate draft)
  • 0000015 Automatic classification of skeleton partonomy (intermediate draft)
  • 0000016 Inter-ontology disjointness axioms (intermediate draft)
  • 0000017 Multiple inheritance in Uberon (intermediate draft)
  • 0000018 Part-disjointness (intermediate draft)
  • 0000022 Taxon constraints (intermediate draft)
  • 0000023 Evolutionary variability and general class axioms (initial draft)
  • 0000025 Skeletal system vs skeleton ()
  • 0000032 Automatic inference of part_of relationships ()
  • 0000034 Digestive tract ()
  • 0000035 Conflation and Discrimination ()
  • 0000036 Developmental stages ()
  • 0000039 Representation of joints/articulations ()
• ontology_usage_article
  • 0000024 Connections between biological processes and anatomical structures (intermediate draft)
  • 0000026 Inter anatomy ontology bridge module ontologies ()
  • 0000027 Multi-species importer ontologies ()
  • 0000028 Multi-species composite ontologies ()
  • 0000037 Synonyms in uberon ()
• spreadsheet_documentation
  • 0000007 Vertebrate cranial terms (peer reviewed)