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Fix some ZFA mapping errors #3361

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merged 6 commits into from
Oct 23, 2024
Merged

Fix some ZFA mapping errors #3361

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a1cdbb6
Remap ZFA's 'griseum centrale'.
gouttegd Sep 12, 2024
b854f7d
Remap ZFA's 'coelom'.
gouttegd Sep 12, 2024
ab00f9a
Remap ZFA's 'inferior raphe nucleus'.
gouttegd Sep 12, 2024
5ebc2e1
Merge branch 'master' into 3353-3356-fix-zfa-mapping-errors
gouttegd Oct 21, 2024
6ef8ca0
Remove mapping with ZFA:0000366.
gouttegd Oct 21, 2024
a6c3afa
Remove mapping with ZFA:0000518.
gouttegd Oct 22, 2024
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5 changes: 1 addition & 4 deletions src/ontology/uberon-edit.obo
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Expand Up @@ -39384,7 +39384,6 @@ xref: neuronames:512 {source="BIRNLEX:982"}
xref: TAO:0000366
xref: UMLS:C0175392 {source="BIRNLEX:982"}
xref: Wikipedia:Dorsal_raphe_nucleus
xref: ZFA:0000366
is_a: UBERON:0002308 ! nucleus of brain
relationship: mutually_spatially_disjoint_with UBERON:0002145 {source="ABA"} ! interpeduncular nucleus
relationship: part_of UBERON:0002639 {source="Wikipedia"} ! midbrain reticular formation
Expand Down Expand Up @@ -47474,11 +47473,9 @@ xref: RETIRED_EHDAA2:0003186
xref: SCTID:361348008
xref: TAO:0001438
xref: UMLS:C0333343 {source="ncithesaurus:Cavity"}
xref: ZFA:0001438
is_a: UBERON:0002553 ! anatomical cavity
relationship: luminal_space_of UBERON:0011997 ! coelom
relationship: transformation_of UBERON:0003886 {evidence="definitional"} ! future coelemic cavity lumen
property_value: external_definition "Anatomical space, part of the trunk that contains the pericardial and pleuroperitoneal cavities[ZFA]." xsd:string {date_retrieved="2012-09-12", external_class="ZFA:0001438", ontology="ZFA", source="ZFIN:curator"}
property_value: external_definition "The cavity within the body of all animals higher than the coelenterates and certain primitive worms, formed by the splitting of the embryonic mesoderm into two layers. In mammals it forms the peritoneal, pleural, and pericardial cavities[BTO]." xsd:string {date_retrieved="2012-09-12", external_class="BTO:0001707", ontology="BTO", source="BTO"}
property_value: taxon_notes "In mammals it forms the peritoneal, pleural, and pericardial cavities" xsd:string

Expand Down Expand Up @@ -65139,7 +65136,6 @@ xref: SCTID:369233003
xref: TAO:0000518
xref: UMLS:C0228398 {source="BIRNLEX:973"}
xref: Wikipedia:Periaqueductal_gray
xref: ZFA:0000518
intersection_of: UBERON:0035011 ! central gray substance
intersection_of: part_of UBERON:0001891 ! midbrain
relationship: mutually_spatially_disjoint_with UBERON:0001715 {source="ABA"} ! oculomotor nuclear complex
Expand Down Expand Up @@ -149784,6 +149780,7 @@ synonym: "haemocoelom" NARROW []
synonym: "schizocoelom" NARROW []
xref: EHDAA2:0004731
xref: Wikipedia:Coelom
xref: ZFA:0001438
is_a: UBERON:0000481 {source="EHDAA2"} ! multi-tissue structure
relationship: in_taxon NCBITaxon:33213 ! Bilateria
relationship: never_in_taxon NCBITaxon:147099 {source="Wikipedia:Acoelomorpha"} ! Acoelomorpha
Expand Down
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