From af8736343f34230e48d00164236f596f5208bf93 Mon Sep 17 00:00:00 2001 From: Charles Tapley Hoyt Date: Sun, 1 Oct 2023 12:46:25 +0200 Subject: [PATCH 1/6] Replace type definition for abbreviation synonyms Closes #3079 by replacing the ad-hod "abbreviation" synonym type definition with the equivalent, externally defined OMO:0003000 --- src/ontology/uberon-edit.obo | 1512 +++++++++++++++++----------------- 1 file changed, 756 insertions(+), 756 deletions(-) diff --git a/src/ontology/uberon-edit.obo b/src/ontology/uberon-edit.obo index 5ffc9efb67..30a8997d0f 100644 --- a/src/ontology/uberon-edit.obo +++ b/src/ontology/uberon-edit.obo @@ -27,7 +27,7 @@ subsetdef: uberon_slim "Uberon slim - subset that excludes obscure terms and dee subsetdef: unverified_taxonomic_grouping "Indicates that the class encompasses classes from other AOs that have not been verified" subsetdef: upper_level "abstract upper-level terms not directly useful for analysis" subsetdef: vertebrate_core "core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO" -synonymtypedef: ABBREVIATION "abbreviation" +synonymtypedef: OMO:0003000 "abbreviation" synonymtypedef: BRAIN_NAME_ABV "brain name abbreviations (drosophila)" synonymtypedef: COMPARATIVE_PREFERRED "preferred term in the context of comparative anatomy" synonymtypedef: DEPRECATED "A historic synonym, no longer encouraged" @@ -407,7 +407,7 @@ subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "glandula pituitaria" EXACT LATIN [Wikipedia:Pituitary_gland] -synonym: "Hp" BROAD ABBREVIATION [BIRNLEX:1353, NIFSTD:NeuroNames_abbrevSource] +synonym: "Hp" BROAD OMO:0003000 [BIRNLEX:1353, NIFSTD:NeuroNames_abbrevSource] synonym: "hypophysis" RELATED [ZFA:0000118] synonym: "hypophysis cerebri" RELATED [MA:0000176] synonym: "pituitary" EXACT [BTO:0001073] @@ -496,7 +496,7 @@ subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "pars peripherica" EXACT LATIN [FMA:9903, FMA:TA, Wikipedia:Peripheral_nervous_system] -synonym: "PNS" BROAD ABBREVIATION [] +synonym: "PNS" BROAD OMO:0003000 [] synonym: "systema nervosum periphericum" EXACT LATIN [FMA:9903, FMA:TA, Wikipedia:Peripheral_nervous_system] xref: AAO:0000429 xref: BAMS:PNS @@ -1381,7 +1381,7 @@ subset: uberon_slim subset: vertebrate_core synonym: "dorsal root ganglia" RELATED PLURAL [] synonym: "dorsal root ganglion" EXACT [BTO:0001264] -synonym: "DRG" RELATED ABBREVIATION [] +synonym: "DRG" RELATED OMO:0003000 [] synonym: "ganglion of dorsal root" EXACT [OBOL:automatic] synonym: "ganglion sensorium nervi spinalis" RELATED LATIN [BTO:0001264, Wikipedia:Dorsal_root_ganglion] synonym: "ganglion spinale" RELATED [BTO:0001264] @@ -6402,7 +6402,7 @@ comment: The lateral tuberal nucleus is specific to humans and higher primates, synonym: "lateral tuberal hypothalamic nuclei" EXACT [FMA:62336] synonym: "lateral tuberal nuclear complex" EXACT [BIRNLEX:1206] synonym: "lateral tuberal nuclei" EXACT [FMA:62336] -synonym: "LTu" BROAD ABBREVIATION [BIRNLEX:1206, NIFSTD:NeuroNames_abbrevSource] +synonym: "LTu" BROAD OMO:0003000 [BIRNLEX:1206, NIFSTD:NeuroNames_abbrevSource] synonym: "nuclei tuberales laterales" RELATED [BTO:0002481] synonym: "nucleus tuberis" RELATED LATIN [NeuroNames:428] synonym: "nucleus tuberis hypothalami" RELATED LATIN [NeuroNames:428] @@ -6546,7 +6546,7 @@ def: "Gray matter structure located on the midline of the forebrain consisting o subset: pheno_slim synonym: "area septalis" EXACT LATIN [FMA:61842, FMA:TA] synonym: "massa praecommissuralis" RELATED LATIN [NeuroNames:255] -synonym: "Se" BROAD ABBREVIATION [PMID:23375746] +synonym: "Se" BROAD OMO:0003000 [PMID:23375746] synonym: "septal area" EXACT [FMA:61842] synonym: "septal region" RELATED [BAMS:SEP] synonym: "septum" BROAD [BIRNLEX:963] @@ -8339,7 +8339,7 @@ def: "A bundle of myelinated nerve fibers passing transversely through the lamin subset: pheno_slim subset: uberon_slim subset: vertebrate_core -synonym: "AC" RELATED ABBREVIATION [NLX:144088] +synonym: "AC" RELATED OMO:0003000 [NLX:144088] synonym: "anterior cerebral commissure" EXACT [http://orcid.org/0000-0002-6601-2165] synonym: "anterior commissural nucleus" RELATED [BAMS:AC] synonym: "commissura anterior" RELATED LATIN [Wikipedia:Anterior_commissure] @@ -8450,7 +8450,7 @@ subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "02 optic nerve" EXACT [AAO:0010345] -synonym: "2n" BROAD ABBREVIATION [BIRNLEX:1640, NIFSTD:NeuroNames_abbrevSource] +synonym: "2n" BROAD OMO:0003000 [BIRNLEX:1640, NIFSTD:NeuroNames_abbrevSource] synonym: "CN-II" RELATED [ZFA:0000435] synonym: "cranial II" EXACT [] synonym: "nerve II" RELATED [NeuroNames:289] @@ -10896,7 +10896,7 @@ subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "cerebrospinal axis" NARROW [FMA:55675] -synonym: "CNS" EXACT ABBREVIATION [] +synonym: "CNS" EXACT OMO:0003000 [] synonym: "neuraxis" RELATED [FMA:55675] synonym: "systema nervosum centrale" EXACT LATIN [FMA:55675, FMA:TA] xref: AAO:0000090 @@ -13702,7 +13702,7 @@ name: sternocleidomastoid def: "A paired muscle in the superficial layers of the anterior portion of the neck. It acts to flex and rotate the head. It also acts as an accessory muscle of inspiration, along with the scalene muscles of the neck. [WP,unvetted]." [Wikipedia:Sternocleidomastoid_muscle] subset: uberon_slim synonym: "musculus sternocleidomastoideus" RELATED LATIN [Wikipedia:Sternocleidomastoid_muscle] -synonym: "SCM" BROAD ABBREVIATION [] +synonym: "SCM" BROAD OMO:0003000 [] synonym: "sterno-cleido-mastoid" RELATED [Wikipedia:Sternocleidomastoid_muscle] synonym: "sterno-mastoid" EXACT [] synonym: "sterno-mastoid" RELATED [Wikipedia:Sternocleidomastoid_muscle] @@ -15229,7 +15229,7 @@ def: "Mesenteric artery that supplies the large intestine from the left colic (o subset: pheno_slim subset: uberon_slim synonym: "arteria mesenterica inferior" RELATED LATIN [BTO:0002302, Wikipedia:Inferior_mesenteric_artery] -synonym: "IMA" BROAD ABBREVIATION [] +synonym: "IMA" BROAD OMO:0003000 [] synonym: "inferior mesenteric arterial tree" EXACT [] xref: BTO:0002302 xref: EHDAA2:0000817 @@ -19455,7 +19455,7 @@ subset: efo_slim subset: pheno_slim subset: uberon_slim synonym: "adipocytus multigutturalis" EXACT [] -synonym: "BAT" RELATED ABBREVIATION [Wikipedia:Brown_adipose_tissue] +synonym: "BAT" RELATED OMO:0003000 [Wikipedia:Brown_adipose_tissue] synonym: "brown fat" EXACT [] synonym: "multilocular adipose tissue" EXACT [] synonym: "textus adiposus fuscus" EXACT [] @@ -20587,8 +20587,8 @@ synonym: "anterior transverse temporal area 41" RELATED [Wikipedia:Primary_audit synonym: "auditory area" RELATED [BTO:0004343] synonym: "auditory areas" RELATED [BAMS:AUD] synonym: "auditory cortex" RELATED [Wikipedia:Primary_auditory_cortex] -synonym: "BA41" RELATED ABBREVIATION [] -synonym: "BA42" RELATED ABBREVIATION [] +synonym: "BA41" RELATED OMO:0003000 [] +synonym: "BA42" RELATED OMO:0003000 [] synonym: "Brodmann area 41" RELATED [Wikipedia:Primary_auditory_cortex] synonym: "Brodmann area 41 & 42" RELATED [Wikipedia:Primary_auditory_cortex] synonym: "Brodmann area 42" RELATED [Wikipedia:Primary_auditory_cortex] @@ -21232,7 +21232,7 @@ property_value: has_relational_adjective "ulnar" xsd:string id: UBERON:0001425 name: pectoral lymphatic vessel subset: vertebrate_core -synonym: "PL" RELATED ABBREVIATION [] +synonym: "PL" RELATED OMO:0003000 [] xref: FMA:234865 xref: TAO:0005107 xref: ZFA:0005107 @@ -21243,8 +21243,8 @@ intersection_of: part_of UBERON:0001421 ! pectoral girdle region id: UBERON:0001426 name: jugular lymphatic vessel subset: vertebrate_core -synonym: "JL" RELATED ABBREVIATION [] -synonym: "JLV" BROAD ABBREVIATION [ZFA:0005109] +synonym: "JL" RELATED OMO:0003000 [] +synonym: "JLV" BROAD OMO:0003000 [ZFA:0005109] xref: FMA:234908 xref: TAO:0005109 xref: ZFA:0005109 @@ -24123,7 +24123,7 @@ subset: uberon_slim subset: vertebrate_core synonym: "arteria carotis interna" RELATED LATIN [Wikipedia:Internal_carotid_artery] synonym: "cranial carotid artery" EXACT [ZFA:0005081] -synonym: "ICA" RELATED ABBREVIATION [] +synonym: "ICA" RELATED OMO:0003000 [] synonym: "internal carotid" EXACT [AAO:0010219] xref: AAO:0010219 xref: AAO:0011054 @@ -24167,7 +24167,7 @@ subset: vertebrate_core synonym: "arteria subclavia" EXACT LATIN [XAO:0000365] synonym: "arteria subclavia" RELATED LATIN [Wikipedia:Subclavian_artery] synonym: "arterial tree of upper limb" EXACT [] -synonym: "PA" RELATED ABBREVIATION [] +synonym: "PA" RELATED OMO:0003000 [] synonym: "pectoral artery" EXACT [] synonym: "subclavian arterial tree" EXACT [] xref: AAO:0010232 @@ -25178,7 +25178,7 @@ def: "Nerve that carries information from the olfactory epithelium to the olfact subset: pheno_slim subset: uberon_slim subset: vertebrate_core -synonym: "1n" BROAD ABBREVIATION [BIRNLEX:1319, NIFSTD:NeuroNames_abbrevSource] +synonym: "1n" BROAD OMO:0003000 [BIRNLEX:1319, NIFSTD:NeuroNames_abbrevSource] synonym: "CN-I" RELATED [] synonym: "cranial nerve I" RELATED [] synonym: "fila olfactoria" RELATED [BTO:0003648] @@ -26559,7 +26559,7 @@ property_value: homology_notes "The major artery supplying the hindbrain, the ba id: UBERON:0001634 name: mesencephalic artery def: "The major artery of the midbrain, which crosses the midbrain medially to meet its partner the mesencephalic vein." [PMID:12606281, XAO:0004173] -synonym: "MsA" EXACT ABBREVIATION [ZFA:0001068] +synonym: "MsA" EXACT OMO:0003000 [ZFA:0001068] xref: FMA:50570 xref: TAO:0001068 xref: XAO:0004173 @@ -26824,7 +26824,7 @@ def: "Cranial nerve which connects the midbrain to the extra-ocular and intra-oc subset: pheno_slim subset: uberon_slim subset: vertebrate_core -synonym: "3n" BROAD ABBREVIATION [BIRNLEX:1646, NIFSTD:NeuroNames_abbrevSource] +synonym: "3n" BROAD OMO:0003000 [BIRNLEX:1646, NIFSTD:NeuroNames_abbrevSource] synonym: "CN-III" RELATED [] synonym: "cranial nerve III" RELATED [] synonym: "nerve III" RELATED [NeuroNames:488] @@ -26876,7 +26876,7 @@ def: "A cranial nerve that runs to the eye muscles." [ISBN:0471209627, Wikipedia subset: pheno_slim subset: uberon_slim subset: vertebrate_core -synonym: "4n" BROAD ABBREVIATION [BIRNLEX:1654, NIFSTD:NeuroNames_abbrevSource] +synonym: "4n" BROAD OMO:0003000 [BIRNLEX:1654, NIFSTD:NeuroNames_abbrevSource] synonym: "CN-IV" RELATED [] synonym: "cranial nerve IV" EXACT [VHOG:0000705, ZFA:0000600] synonym: "fourth cranial nerve" EXACT [] @@ -26931,7 +26931,7 @@ subset: efo_slim subset: pheno_slim subset: uberon_slim subset: vertebrate_core -synonym: "5n" BROAD ABBREVIATION [BIRNLEX:869, NIFSTD:NeuroNames_abbrevSource] +synonym: "5n" BROAD OMO:0003000 [BIRNLEX:869, NIFSTD:NeuroNames_abbrevSource] synonym: "CN-V" RELATED [] synonym: "cranial nerve V" RELATED [] synonym: "fifth cranial nerve" EXACT [] @@ -26991,7 +26991,7 @@ def: "Cranial nerve that runs to the eye muscles." [ISBN:0471209627, Wikipedia:A subset: pheno_slim subset: uberon_slim subset: vertebrate_core -synonym: "6n" BROAD ABBREVIATION [BIRNLEX:876, NIFSTD:NeuroNames_abbrevSource] +synonym: "6n" BROAD OMO:0003000 [BIRNLEX:876, NIFSTD:NeuroNames_abbrevSource] synonym: "abducens nerve [VI]" EXACT [] synonym: "abducens nerve tree" EXACT [] synonym: "abducens nerve/root" RELATED [BAMS:6n] @@ -27046,7 +27046,7 @@ def: "Cranial nerve that branches into the supraorbital (supplying the skin of t subset: pheno_slim subset: uberon_slim subset: vertebrate_core -synonym: "7n" BROAD ABBREVIATION [BIRNLEX:827, NIFSTD:NeuroNames_abbrevSource] +synonym: "7n" BROAD OMO:0003000 [BIRNLEX:827, NIFSTD:NeuroNames_abbrevSource] synonym: "branchiomeric cranial nerve" EXACT [] synonym: "CN-VII" RELATED [] synonym: "cranial nerve VII" RELATED [] @@ -27107,7 +27107,7 @@ def: "Cranial nerve that transmits sound and equilibrium (balance) information f subset: pheno_slim subset: uberon_slim subset: vertebrate_core -synonym: "8n" BROAD ABBREVIATION [BIRNLEX:890, NIFSTD:NeuroNames_abbrevSource] +synonym: "8n" BROAD OMO:0003000 [BIRNLEX:890, NIFSTD:NeuroNames_abbrevSource] synonym: "acoustic nerve" EXACT [FMA:50869] synonym: "acoustic nerve (Crosby)" EXACT [] synonym: "acoustic VIII nerve" EXACT [] @@ -27168,8 +27168,8 @@ def: "Cranial nerve that branches into the ramus communicans (to the skin), the subset: pheno_slim subset: uberon_slim subset: vertebrate_core -synonym: "9n" BROAD ABBREVIATION [BIRNLEX:899, NIFSTD:NeuroNames_abbrevSource] -synonym: "CN-IX" RELATED ABBREVIATION [] +synonym: "9n" BROAD OMO:0003000 [BIRNLEX:899, NIFSTD:NeuroNames_abbrevSource] +synonym: "CN-IX" RELATED OMO:0003000 [] synonym: "cranial nerve IX" RELATED [] synonym: "glossopharyngeal IX" EXACT [EHDAA2:0000709] synonym: "glossopharyngeal IX nerve" EXACT [] @@ -27221,7 +27221,7 @@ name: hypoglossal nerve def: "Cranial nerve that innervates the muscles of the tongue." [http://orcid.org/0000-0002-6601-2165, ISBN:080184780X, VHOG:0000693] subset: pheno_slim subset: uberon_slim -synonym: "12n" BROAD ABBREVIATION [BIRNLEX:820, NIFSTD:NeuroNames_abbrevSource] +synonym: "12n" BROAD OMO:0003000 [BIRNLEX:820, NIFSTD:NeuroNames_abbrevSource] synonym: "CN-XII" RELATED [VHOG:0000693] synonym: "cranial nerve XII" EXACT [BIRNLEX:820] synonym: "hypoglossal nerve [XII]" EXACT [] @@ -29087,7 +29087,7 @@ synonym: "oculomotor III nuclear complex" EXACT [] synonym: "oculomotor III nucleus" EXACT [MA:0001073] synonym: "oculomotor motornucleus" RELATED [XAO:0004389] synonym: "oculomotor nucleus" EXACT [FMA:54510] -synonym: "OM" EXACT ABBREVIATION [XAO:0004389] +synonym: "OM" EXACT OMO:0003000 [XAO:0004389] synonym: "third cranial nerve nucleus" EXACT [FMA:54510] xref: BAMS:3 xref: BAMS:III @@ -29209,7 +29209,7 @@ def: "Elongated nucleus located in the midbrain tegmentum that receives proprioc subset: pheno_slim subset: uberon_slim subset: vertebrate_core -synonym: "Me5" BROAD ABBREVIATION [BIRNLEX:1010, NIFSTD:NeuroNames_abbrevSource] +synonym: "Me5" BROAD OMO:0003000 [BIRNLEX:1010, NIFSTD:NeuroNames_abbrevSource] synonym: "mesencephalic nuclei of trigeminal nerves" RELATED PLURAL [ZFA:0000312] synonym: "mesencephalic nucleus" BROAD [Wikipedia:Mesencephalic_nucleus_of_trigeminal_nerve] synonym: "mesencephalic nucleus of the trigeminal" RELATED [BAMS:MEV] @@ -29256,7 +29256,7 @@ id: UBERON:0001719 name: nucleus ambiguus def: "A region of histologically disparate cells located just dorsal to the inferior olivary nucleus in the lateral portion of the upper medulla. It receives upper motor neuron innervation directly via the corticobulbar tract This nucleus gives rise to the efferent motor fibers of the vagus nerve terminating in the laryngeal and pharyngeal muscles, as well as to the efferent motor fibers of the glossopharyngeal nerve (CN IX) terminating in the stylopharyngeus. [WP,unvetted]." [Wikipedia:Nucleus_ambiguus] subset: uberon_slim -synonym: "Amb" BROAD ABBREVIATION [BIRNLEX:2650, NIFSTD:NeuroNames_abbrevSource] +synonym: "Amb" BROAD OMO:0003000 [BIRNLEX:2650, NIFSTD:NeuroNames_abbrevSource] synonym: "ambiguous nucleus" RELATED [NeuroNames:765] synonym: "ambiguus nucleus" EXACT [] synonym: "nucleus innominatus" RELATED LATIN [NeuroNames:765] @@ -30367,7 +30367,7 @@ subset: efo_slim subset: pheno_slim subset: uberon_slim subset: vertebrate_core -synonym: "10n" BROAD ABBREVIATION [BIRNLEX:801, NIFSTD:NeuroNames_abbrevSource] +synonym: "10n" BROAD OMO:0003000 [BIRNLEX:801, NIFSTD:NeuroNames_abbrevSource] synonym: "CN-X" RELATED [] synonym: "cranial nerve X" RELATED [] synonym: "nerve X" RELATED [NeuroNames:702] @@ -31309,7 +31309,7 @@ def: "The row of jucntional complexes between the plasma membranes of rod segmen subset: pheno_slim subset: vertebrate_core synonym: "blood retina barrier" RELATED [https://github.com/obophenotype/mammalian-phenotype-ontology/issues/2109] -synonym: "BRB" RELATED ABBREVIATION [https://github.com/obophenotype/mammalian-phenotype-ontology/issues/2109] +synonym: "BRB" RELATED OMO:0003000 [https://github.com/obophenotype/mammalian-phenotype-ontology/issues/2109] synonym: "external limiting lamina of retina" EXACT [] synonym: "external limiting membrane" EXACT [ZFA:0001331] synonym: "external limiting membrane of retina" EXACT [] @@ -31378,7 +31378,7 @@ def: "The layer within the retina where the bipolar cells synapse with the photo subset: pheno_slim subset: vertebrate_core synonym: "external plexiform layer" BROAD [BTO:0003174] -synonym: "OPL" NARROW ABBREVIATION [] +synonym: "OPL" NARROW OMO:0003000 [] synonym: "outer plexiform layer" EXACT [BTO:0003174] synonym: "retina outer plexiform layer" EXACT [] synonym: "retina, outer plexiform layer" RELATED [BAMS:Ropl] @@ -31535,7 +31535,7 @@ name: inner limiting layer of retina def: "The row of fused Muller cell processes and astrocytes that separates the retinal nerve fiber layer from the vitreous[MP]." [MP:0010235] subset: pheno_slim subset: vertebrate_core -synonym: "ILM" BROAD ABBREVIATION [ZFA:0001029] +synonym: "ILM" BROAD OMO:0003000 [ZFA:0001029] synonym: "inner limiting membrane" EXACT [XAO:0003222] synonym: "inner limiting membrane of retina" EXACT [] synonym: "inner limiting membranes" RELATED PLURAL [ZFA:0001029] @@ -31571,7 +31571,7 @@ subset: pheno_slim subset: vertebrate_core synonym: "inner plexiform layer" RELATED [BTO:0003175] synonym: "internal plexiform layer of retina" RELATED [NLXANAT:1005032] -synonym: "IPL" NARROW ABBREVIATION [] +synonym: "IPL" NARROW OMO:0003000 [] synonym: "retina inner plexiform layer" EXACT [] synonym: "retina, inner plexiform layer" RELATED [BAMS:Ripl] synonym: "retinal inner plexiform layer" EXACT [] @@ -33948,7 +33948,7 @@ synonym: "bed nuclei of the stria terminalis" RELATED [BAMS:BST] synonym: "bed nucleus of the stria terminalis" EXACT [BIRNLEX:724] synonym: "bed nucleus stria terminalis (Johnson)" EXACT [BIRNLEX:724] synonym: "bed nucleus striae terminalis" EXACT [XAO:0004541] -synonym: "BST" BROAD ABBREVIATION [INCF:Seattle_mtg_2010] +synonym: "BST" BROAD OMO:0003000 [INCF:Seattle_mtg_2010] synonym: "intercalate nucleus of stria terminalis" EXACT [] synonym: "interstitial nucleus of stria terminalis" EXACT [BIRNLEX:724] synonym: "nuclei of stria terminalis" EXACT [] @@ -34186,7 +34186,7 @@ subset: uberon_slim subset: vertebrate_core synonym: "chorioid plexus" EXACT [FMA:61934] synonym: "choroid plexus of cerebral hemisphere" RELATED [FMA:61934] -synonym: "CP" BROAD ABBREVIATION [PMID:23375746] +synonym: "CP" BROAD OMO:0003000 [PMID:23375746] synonym: "plexus choroideus" EXACT LATIN [FMA:61934, FMA:TA] synonym: "plexus choroideus" RELATED LATIN [Wikipedia:Choroid_plexus] synonym: "ventricular choroid plexus" RELATED [] @@ -34266,7 +34266,7 @@ synonym: "lateral olfactory stria" RELATED [FMA:61971, NeuroNames:284] synonym: "lateral olfactory tract" RELATED [NeuroNames:284] synonym: "lateral olfactory tract, body" RELATED [NeuroNames:284] synonym: "lateral olfactory tract. body" RELATED [BAMS:lot] -synonym: "LOT" RELATED ABBREVIATION [] +synonym: "LOT" RELATED OMO:0003000 [] synonym: "olfactory tract" RELATED [NeuroNames:284] synonym: "stria olfactoria lateralis" RELATED LATIN [NeuroNames:284, Wikipedia:Lateral_olfactory_stria] synonym: "tractus olfactorius lateralis" EXACT LATIN [ZFA:0000229] @@ -34313,7 +34313,7 @@ subset: efo_slim subset: pheno_slim subset: uberon_slim subset: vertebrate_core -synonym: "FB" BROAD ABBREVIATION [BIRNLEX:1509, NIFSTD:NeuroNames_abbrevSource] +synonym: "FB" BROAD OMO:0003000 [BIRNLEX:1509, NIFSTD:NeuroNames_abbrevSource] synonym: "prosencephalon" RELATED [] xref: AAO:0010147 xref: BAMS:FB @@ -34362,7 +34362,7 @@ subset: efo_slim subset: pheno_slim subset: uberon_slim subset: vertebrate_core -synonym: "MB" BROAD ABBREVIATION [BIRNLEX:1667, NIFSTD:NeuroNames_abbrevSource] +synonym: "MB" BROAD OMO:0003000 [BIRNLEX:1667, NIFSTD:NeuroNames_abbrevSource] synonym: "mesencephalon" RELATED LATIN [Wikipedia:Midbrain] xref: AAO:0010149 xref: BAMS:MES @@ -34515,7 +34515,7 @@ subset: uberon_slim subset: vertebrate_core synonym: "between brain" EXACT [] synonym: "betweenbrain" RELATED [BTO:0000342] -synonym: "DiE" BROAD ABBREVIATION [BIRNLEX:1503, NIFSTD:NeuroNames_abbrevSource] +synonym: "DiE" BROAD OMO:0003000 [BIRNLEX:1503, NIFSTD:NeuroNames_abbrevSource] synonym: "diencephalon" RELATED LATIN [Wikipedia:Diencephalon] synonym: "interbrain" EXACT [Swanson:2004] synonym: "mature diencephalon" EXACT [FMA:62001] @@ -34674,7 +34674,7 @@ subset: efo_slim subset: pheno_slim subset: uberon_slim subset: vertebrate_core -synonym: "Th" BROAD ABBREVIATION [BIRNLEX:954, NIFSTD:NeuroNames_abbrevSource, PMID:23375746] +synonym: "Th" BROAD OMO:0003000 [BIRNLEX:954, NIFSTD:NeuroNames_abbrevSource, PMID:23375746] synonym: "thalamencephalon" RELATED LATIN [NeuroNames:300] synonym: "thalami" RELATED PLURAL [VHOG:0000657] synonym: "thalamus" BROAD [FMA:62007, MA:0000179] @@ -34726,7 +34726,7 @@ subset: efo_slim subset: pheno_slim subset: uberon_slim subset: vertebrate_core -synonym: "Hy" BROAD ABBREVIATION [BIRNLEX:734, NIFSTD:NeuroNames_abbrevSource] +synonym: "Hy" BROAD OMO:0003000 [BIRNLEX:734, NIFSTD:NeuroNames_abbrevSource] synonym: "hypothalamus" RELATED LATIN [Wikipedia:Hypothalamus] synonym: "preoptico-hypothalamic area" EXACT [] synonym: "preoptico-hypothalamic region" EXACT [] @@ -34786,7 +34786,7 @@ subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "epithalamus" RELATED LATIN [Wikipedia:Epithalamus] -synonym: "ETh" BROAD ABBREVIATION [BIRNLEX:1710, NIFSTD:NeuroNames_abbrevSource] +synonym: "ETh" BROAD OMO:0003000 [BIRNLEX:1710, NIFSTD:NeuroNames_abbrevSource] xref: AAO:0010482 xref: BAMS:EPI xref: BAMS:Epi @@ -34842,7 +34842,7 @@ subset: uberon_slim subset: vertebrate_core synonym: "perithalamus" RELATED [Wikipedia:Thalamus] synonym: "prethalamus" RELATED DEVELOPMENTAL [Wikipedia:Thalamus] -synonym: "SbTh" BROAD ABBREVIATION [BIRNLEX:708, NIFSTD:NeuroNames_abbrevSource] +synonym: "SbTh" BROAD OMO:0003000 [BIRNLEX:708, NIFSTD:NeuroNames_abbrevSource] synonym: "subthalamic region" EXACT [BIRNLEX:708, FMA:62010] synonym: "subthalamus" EXACT [BIRNLEX:708, Wikipedia:Thalamus] synonym: "thalamus ventralis" EXACT LATIN [BIRNLEX:708] @@ -34991,7 +34991,7 @@ synonym: "habenula complex" EXACT LATIN [FMA:62032, FMA:TA] synonym: "habenulae" RELATED [] synonym: "habenular complex" RELATED [] synonym: "habenular nuclei" RELATED [] -synonym: "Hb" BROAD ABBREVIATION [BIRNLEX:1611, NIFSTD:NeuroNames_abbrevSource] +synonym: "Hb" BROAD OMO:0003000 [BIRNLEX:1611, NIFSTD:NeuroNames_abbrevSource] synonym: "nuclei habenulares" RELATED LATIN [NeuroNames:294] synonym: "nucleus habenularis" RELATED LATIN [NeuroNames:294] synonym: "pineal peduncle" RELATED [BTO:0003684] @@ -35035,7 +35035,7 @@ synonym: "epiphysis" RELATED INCONSISTENT [ZFA:0000019] synonym: "epiphysis cerebri" RELATED [Wikipedia:Epiphysis_cerebri] synonym: "frontal organ" RELATED [VHOG:0000051] synonym: "glandula pinealis" EXACT LATIN [FMA:62033, FMA:TA] -synonym: "Pi" BROAD ABBREVIATION [BIRNLEX:1184, NIFSTD:NeuroNames_abbrevSource] +synonym: "Pi" BROAD OMO:0003000 [BIRNLEX:1184, NIFSTD:NeuroNames_abbrevSource] synonym: "pineal" RELATED [VHOG:0000051] synonym: "pineal gland" EXACT [FMA:62033] synonym: "pineal gland (Galen)" RELATED [NeuroNames:297] @@ -35226,7 +35226,7 @@ synonym: "commissura habenularum" EXACT LATIN [Wikipedia:Habenular_commissure, Z synonym: "commissure habenularum" EXACT [MP:0008231] synonym: "habenular commissure (Haller)" RELATED [NeuroNames:299] synonym: "habenular commisure" RELATED [BAMS:hbc] -synonym: "HBC" BROAD ABBREVIATION [BIRNLEX:1609, NIFSTD:NeuroNames_abbrevSource] +synonym: "HBC" BROAD OMO:0003000 [BIRNLEX:1609, NIFSTD:NeuroNames_abbrevSource] xref: BAMS:hbc xref: BAMS:HC xref: BAMS:HG @@ -35264,7 +35264,7 @@ synonym: "fasciculus prosencephalicus medialis" RELATED LATIN [NeuroNames:433] synonym: "medial forebrain bundles" RELATED PLURAL [ZFA:0005111] synonym: "medial forebrain fasciculus" EXACT [] synonym: "median forebrain bundle" RELATED [NeuroNames:433] -synonym: "MFB" BROAD ABBREVIATION [BIRNLEX:908, NIFSTD:NeuroNames_abbrevSource] +synonym: "MFB" BROAD OMO:0003000 [BIRNLEX:908, NIFSTD:NeuroNames_abbrevSource] synonym: "telencephalic medial fasciculus" EXACT [] xref: BAMS:mfb xref: BIRNLEX:908 @@ -35517,7 +35517,7 @@ synonym: "paraventricular nuclei" RELATED PLURAL [] synonym: "paraventricular nuclei of thalamus" EXACT PLURAL [] synonym: "paraventricular nucleus of the thalamus" RELATED [NeuroNames:308] synonym: "paraventricular thalamic nucleus" EXACT [] -synonym: "PV" BROAD ABBREVIATION [BIRNLEX:764, NIFSTD:NeuroNames_abbrevSource] +synonym: "PV" BROAD OMO:0003000 [BIRNLEX:764, NIFSTD:NeuroNames_abbrevSource] xref: BAMS:PV xref: BAMS:PVT xref: BIRNLEX:764 @@ -35547,7 +35547,7 @@ synonym: "nucleus of reunions" RELATED [NeuroNames:309] synonym: "nucleus reuniens" EXACT [] synonym: "nucleus reuniens (Malone)" RELATED [NeuroNames:309] synonym: "nucleus reuniens thalami" RELATED LATIN [NeuroNames:309] -synonym: "Re" BROAD ABBREVIATION [BIRNLEX:770, NIFSTD:NeuroNames_abbrevSource] +synonym: "Re" BROAD OMO:0003000 [BIRNLEX:770, NIFSTD:NeuroNames_abbrevSource] synonym: "reuniens nucleus of the thalamus" RELATED [BAMS:RE] synonym: "reuniens thalamic nucleus" EXACT [FMA:62153] xref: BAMS:RE @@ -35577,7 +35577,7 @@ synonym: "parafascicular nucleus (vogt)" EXACT [BIRNLEX:952] synonym: "parafascicular nucleus of thalamus" EXACT [] synonym: "parafascicular nucleus of the thalamus" EXACT [BIRNLEX:952] synonym: "parafascicular thalamic nucleus" EXACT [] -synonym: "PF" BROAD ABBREVIATION [BIRNLEX:952, NIFSTD:NeuroNames_abbrevSource] +synonym: "PF" BROAD OMO:0003000 [BIRNLEX:952, NIFSTD:NeuroNames_abbrevSource] xref: BAMS:PF xref: BIRNLEX:952 xref: BM:Die-Th-Pf @@ -35611,7 +35611,7 @@ synonym: "central medial nucleus of the thalamus" RELATED [NeuroNames:321] synonym: "central medial nucleus thalamus (rioch 1928)" EXACT [BIRNLEX:971] synonym: "central medial thalamic nucleus" EXACT [] synonym: "centromedial thalamic nucleus" RELATED [BAMS:CM] -synonym: "CM" BROAD ABBREVIATION [BIRNLEX:971, NIFSTD:NeuroNames_abbrevSource] +synonym: "CM" BROAD OMO:0003000 [BIRNLEX:971, NIFSTD:NeuroNames_abbrevSource] synonym: "nucleus centralis medialis" EXACT [BIRNLEX:971] synonym: "nucleus centralis medialis thalami" EXACT [BIRNLEX:971] xref: BAMS:CM @@ -35652,7 +35652,7 @@ synonym: "paracentral nucleus of thalamus" EXACT [] synonym: "paracentral nucleus of the thalamus" RELATED [NeuroNames:322] synonym: "paracentral nucleus thalamus (gurdjian 1927)" EXACT [BIRNLEX:981] synonym: "paracentral thalamic nucleus" EXACT [] -synonym: "PC" BROAD ABBREVIATION [BIRNLEX:981, NIFSTD:NeuroNames_abbrevSource] +synonym: "PC" BROAD OMO:0003000 [BIRNLEX:981, NIFSTD:NeuroNames_abbrevSource] xref: BAMS:PAC xref: BAMS:PC xref: BAMS:PCM @@ -35703,7 +35703,7 @@ synonym: "ventral lateral thalamic nuclei" EXACT [FMA:62186] synonym: "ventral lateral thalamic nucleus" EXACT [BIRNLEX:1237] synonym: "ventrolateral complex" RELATED [BAMS:VL] synonym: "ventrolateral thalamic nucleus" EXACT [FMA:62186] -synonym: "VL" BROAD ABBREVIATION [BIRNLEX:1237, NIFSTD:NeuroNames_abbrevSource] +synonym: "VL" BROAD OMO:0003000 [BIRNLEX:1237, NIFSTD:NeuroNames_abbrevSource] xref: BAMS:VL xref: BAMS:VTh xref: BIRNLEX:1237 @@ -35740,8 +35740,8 @@ synonym: "corpus geniculatus lateralis" RELATED LATIN [NeuroNames:352] synonym: "external geniculate body" RELATED [Wikipedia:Lateral_geniculate_nucleus] synonym: "lateral geniculate complex" EXACT [] synonym: "lateral geniculate nucleus" EXACT [] -synonym: "LGB" RELATED ABBREVIATION [BTO:0004367] -synonym: "LGN" BROAD ABBREVIATION [BIRNLEX:1662, NIFSTD:NeuroNames_abbrevSource] +synonym: "LGB" RELATED OMO:0003000 [BTO:0004367] +synonym: "LGN" BROAD OMO:0003000 [BIRNLEX:1662, NIFSTD:NeuroNames_abbrevSource] synonym: "nucleus corporis geniculati lateralis" RELATED LATIN [BAMS:LG, NeuroNames:352] synonym: "nucleus geniculatus lateralis" EXACT [BIRNLEX:1662] xref: BAMS:C.gl. @@ -35784,7 +35784,7 @@ synonym: "medial geniculate complex of dorsal thalamus" RELATED [BAMS:MG] synonym: "medial geniculate nuclei" EXACT [] synonym: "medial geniculate nucleus" EXACT [] synonym: "MGB" RELATED [BTO:0002674] -synonym: "MGN" BROAD ABBREVIATION [BIRNLEX:1670, NIFSTD:NeuroNames_abbrevSource] +synonym: "MGN" BROAD OMO:0003000 [BIRNLEX:1670, NIFSTD:NeuroNames_abbrevSource] synonym: "nuclei corporis geniculati medialis" EXACT LATIN [FMA:62211, FMA:TA] synonym: "nucleus corporis geniculati medialis" RELATED LATIN [NeuroNames:355] synonym: "nucleus geniculatus medialis" RELATED LATIN [NeuroNames:355] @@ -35825,7 +35825,7 @@ synonym: "area hypothalamica rostralis" RELATED [BTO:0001796] synonym: "area praeoptica" RELATED [] synonym: "area preoptica" RELATED LATIN [Wikipedia:Preoptic_area] synonym: "nuclei preoptici" RELATED LATIN [NeuroNames:377] -synonym: "POA" BROAD ABBREVIATION [BIRNLEX:1706, NIFSTD:NeuroNames_abbrevSource, PMID:23375746] +synonym: "POA" BROAD OMO:0003000 [BIRNLEX:1706, NIFSTD:NeuroNames_abbrevSource, PMID:23375746] synonym: "preoptic hypothalamic area" RELATED [BTO:0001796] synonym: "preoptic hypothalamic region" RELATED [BTO:0001796] synonym: "preoptic nuclei" EXACT [] @@ -35870,7 +35870,7 @@ synonym: "nucleus supraopticus" EXACT [BTO:0002697] synonym: "nucleus supraopticus" RELATED LATIN [Wikipedia:Supraoptic_nucleus] synonym: "nucleus supraopticus hypothalami" RELATED LATIN [NeuroNames:385] synonym: "nucleus tangentialis (Riley)" RELATED LATIN [NeuroNames:385] -synonym: "SO" BROAD ABBREVIATION [BIRNLEX:1411, NIFSTD:NeuroNames_abbrevSource] +synonym: "SO" BROAD OMO:0003000 [BIRNLEX:1411, NIFSTD:NeuroNames_abbrevSource] synonym: "supra-optic nucleus" EXACT [] synonym: "supraoptic nucleus of hypothalamus" EXACT [] synonym: "supraoptic nucleus proper (Lenhossek)" RELATED [NeuroNames:385] @@ -35921,7 +35921,7 @@ synonym: "nucleus filiformis" RELATED LATIN [NeuroNames:387] synonym: "nucleus hypothalami filiformis" RELATED LATIN [NeuroNames:387] synonym: "nucleus hypothalami paraventricularis" RELATED LATIN [NeuroNames:387] synonym: "nucleus paraventricularis hypothalami" RELATED [BTO:0002476] -synonym: "Pa" BROAD ABBREVIATION [BIRNLEX:1407, NIFSTD:NeuroNames_abbrevSource] +synonym: "Pa" BROAD OMO:0003000 [BIRNLEX:1407, NIFSTD:NeuroNames_abbrevSource] synonym: "paraventricular hypothalamic nucleus" EXACT [] synonym: "paraventricular nucleus" EXACT [] synonym: "paraventricular nucleus hypothalamus (Malone)" RELATED [NeuroNames:387] @@ -35965,7 +35965,7 @@ synonym: "area praeoptica lateralis" RELATED LATIN [NeuroNames:381] synonym: "area preoptica lateralis" RELATED LATIN [NeuroNames:381] synonym: "lateral preoptic area" EXACT [] synonym: "lateral preoptic hypothalamic nucleus" EXACT [] -synonym: "LPO" BROAD ABBREVIATION [BIRNLEX:1722, NIFSTD:NeuroNames_abbrevSource] +synonym: "LPO" BROAD OMO:0003000 [BIRNLEX:1722, NIFSTD:NeuroNames_abbrevSource] synonym: "nucleus praeopticus lateralis" RELATED LATIN [NeuroNames:381] synonym: "nucleus preopticus lateralis" RELATED LATIN [NeuroNames:381] xref: BAMS:LPO @@ -35998,7 +35998,7 @@ id: UBERON:0001932 name: arcuate nucleus of hypothalamus def: "The arcuate nucleus (or infundibular nucleus) is an aggregation of neurons in the mediobasal hypothalamus, adjacent to the third ventricle and the median eminence. The arcuate nucleus includes several important populations of neurons, including: Neuroendocrine neurons, Centrally-projecting neurons and Others. [WP,unvetted]." [Wikipedia:Arcuate_nucleus] subset: uberon_slim -synonym: "ArcH" BROAD ABBREVIATION [BIRNLEX:1638, NIFSTD:NeuroNames_abbrevSource] +synonym: "ArcH" BROAD OMO:0003000 [BIRNLEX:1638, NIFSTD:NeuroNames_abbrevSource] synonym: "arcuate hypothalamic nucleus" EXACT [] synonym: "arcuate nucleus" EXACT [] synonym: "arcuate nucleus of the hypothalamus" RELATED [NeuroNames:395] @@ -36046,7 +36046,7 @@ id: UBERON:0001933 name: retrochiasmatic area synonym: "area retrochiasmatica" RELATED LATIN [NeuroNames:396] synonym: "nucleus supraopticus diffusus" RELATED LATIN [NeuroNames:396] -synonym: "RCh" BROAD ABBREVIATION [BIRNLEX:1569, NIFSTD:NeuroNames_abbrevSource] +synonym: "RCh" BROAD OMO:0003000 [BIRNLEX:1569, NIFSTD:NeuroNames_abbrevSource] synonym: "retrochiasmatic area" RELATED [NeuroNames:396] synonym: "retrochiasmatic hypothalamic area" RELATED [NeuroNames:396] synonym: "retrochiasmatic region" EXACT [] @@ -36073,7 +36073,7 @@ id: UBERON:0001934 name: dorsomedial nucleus of hypothalamus def: "The Dorsomedial hypothalamic nucleus is a nucleus of the hypothalamus. It is involved in feeding, drinking, and body weight regulation. [WP,unvetted]." [Wikipedia:Dorsomedial_hypothalamic_nucleus] subset: uberon_slim -synonym: "DMH" BROAD ABBREVIATION [BIRNLEX:1558, NIFSTD:NeuroNames_abbrevSource] +synonym: "DMH" BROAD OMO:0003000 [BIRNLEX:1558, NIFSTD:NeuroNames_abbrevSource] synonym: "dorsomedial hypothalamic nucleus" EXACT [] synonym: "dorsomedial nucleus" BROAD [] synonym: "dorsomedial nucleus hypothalamus" RELATED [NeuroNames:397] @@ -36128,7 +36128,7 @@ synonym: "ventromedial hypothalamic nucleus" EXACT [] synonym: "ventromedial nucleus hypothalamus" RELATED [NeuroNames:398] synonym: "ventromedial nucleus of hypothalamus." RELATED [BTO:0002472] synonym: "ventromedial nucleus of the hypothalamus" RELATED [NeuroNames:398] -synonym: "VMH" BROAD ABBREVIATION [BIRNLEX:1572, NIFSTD:NeuroNames_abbrevSource] +synonym: "VMH" BROAD OMO:0003000 [BIRNLEX:1572, NIFSTD:NeuroNames_abbrevSource] xref: BAMS:VMH xref: BIRNLEX:1572 xref: BM:VMH @@ -36165,8 +36165,8 @@ synonym: "mammilloinfundibular nucleus" EXACT [FMA:62335] synonym: "mammiloinfundibular nucleus" EXACT [BIRNLEX:1271] synonym: "nucleus tuberomamillaris" RELATED LATIN [NeuroNames:427] synonym: "nucleus tuberomamillaris hypothalami" RELATED LATIN [NeuroNames:427] -synonym: "TM" BROAD ABBREVIATION [BIRNLEX:1271, NIFSTD:NeuroNames_abbrevSource] -synonym: "TM" RELATED ABBREVIATION [BIRNLEX:1271] +synonym: "TM" BROAD OMO:0003000 [BIRNLEX:1271, NIFSTD:NeuroNames_abbrevSource] +synonym: "TM" RELATED OMO:0003000 [BIRNLEX:1271] synonym: "tubero-mamillary area" RELATED [NeuroNames:427] synonym: "tuberomamillary nucleus" RELATED DUBIOUS [EV:0100237] synonym: "tuberomammillary hypothalamic nucleus" EXACT [BIRNLEX:1271] @@ -36203,7 +36203,7 @@ subset: vertebrate_core synonym: "areas of Economo" RELATED [NeuroNames:1347] synonym: "economo's areas" RELATED [NeuroNames:1347] synonym: "lateral hypothalamic nuclei" RELATED PLURAL [ZFA:0000227] -synonym: "LHy" BROAD ABBREVIATION [BIRNLEX:1199, NIFSTD:NeuroNames_abbrevSource] +synonym: "LHy" BROAD OMO:0003000 [BIRNLEX:1199, NIFSTD:NeuroNames_abbrevSource] synonym: "nucleus hypothalamicus lateralis" EXACT LATIN [FMA:62337, FMA:TA] xref: BAMS:LHy xref: BIRNLEX:1199 @@ -36226,7 +36226,7 @@ synonym: "lateral mamillary nucleus" RELATED [NeuroNames:413] synonym: "lateral mammillary hypothalamic nucleus" EXACT [] synonym: "lateral mammillary nucleus (Gudden)" RELATED [NeuroNames:413] synonym: "lateral nucleus of mammillary body" EXACT [] -synonym: "LM" BROAD ABBREVIATION [BIRNLEX:1460, NIFSTD:NeuroNames_abbrevSource] +synonym: "LM" BROAD OMO:0003000 [BIRNLEX:1460, NIFSTD:NeuroNames_abbrevSource] synonym: "nucleus corporis mamillaris lateralis" RELATED LATIN [NeuroNames:413] synonym: "nucleus intercalatus (Olszewski)" RELATED LATIN [NeuroNames:413] synonym: "nucleus lateralis corpus mamillaris" RELATED LATIN [NeuroNames:413] @@ -36260,7 +36260,7 @@ synonym: "internal mammillary nucleus" EXACT [] synonym: "medial mamillary nucleus" RELATED [BAMS:MM] synonym: "medial mammillary nucleus, body" RELATED [BAMS:MM] synonym: "medial nucleus of mammillary body" EXACT [] -synonym: "MM" BROAD ABBREVIATION [BIRNLEX:1299, NIFSTD:NeuroNames_abbrevSource] +synonym: "MM" BROAD OMO:0003000 [BIRNLEX:1299, NIFSTD:NeuroNames_abbrevSource] synonym: "nucleus mammillaris medialis" EXACT LATIN [FMA:62342, FMA:TA] synonym: "preoptic division" RELATED [NeuroNames:376] xref: BAMS:MM @@ -36291,7 +36291,7 @@ name: supramammillary nucleus synonym: "nuclei premamillaris" RELATED LATIN [NeuroNames:418] synonym: "nucleus premamillaris hypothalami" RELATED LATIN [NeuroNames:418] synonym: "premamillary nucleus" RELATED [NeuroNames:418] -synonym: "SuM" BROAD ABBREVIATION [BIRNLEX:1479, NIFSTD:NeuroNames_abbrevSource] +synonym: "SuM" BROAD OMO:0003000 [BIRNLEX:1479, NIFSTD:NeuroNames_abbrevSource] xref: BAMS:SUM xref: BAMS:SuM xref: BIRNLEX:1479 @@ -36316,7 +36316,7 @@ id: UBERON:0001941 name: lateral habenular nucleus synonym: "lateral habenula" EXACT [] synonym: "lateral habenula (Nissl)" RELATED [NeuroNames:295] -synonym: "LHb" BROAD ABBREVIATION [BIRNLEX:1438, NIFSTD:NeuroNames_abbrevSource] +synonym: "LHb" BROAD OMO:0003000 [BIRNLEX:1438, NIFSTD:NeuroNames_abbrevSource] synonym: "nucleus habenulae lateralis" EXACT [BIRNLEX:1438] synonym: "nucleus habenularis lateralis" EXACT [BIRNLEX:1438] synonym: "nucleus habenularis lateralis epithalami" EXACT [BIRNLEX:1438] @@ -36348,7 +36348,7 @@ def: "The habenular nuclei comprise a small group of nuclei that are part of the synonym: "ganglion intercrurale" RELATED LATIN [NeuroNames:294] synonym: "ganglion interpedunculare" RELATED LATIN [NeuroNames:294] synonym: "medial habenula" EXACT [] -synonym: "MHb" BROAD ABBREVIATION [BIRNLEX:1431, NIFSTD:NeuroNames_abbrevSource] +synonym: "MHb" BROAD OMO:0003000 [BIRNLEX:1431, NIFSTD:NeuroNames_abbrevSource] synonym: "nuclei habenulares" RELATED LATIN [NeuroNames:294] synonym: "nucleus habenulae medialis" EXACT [BIRNLEX:1431] synonym: "nucleus habenularis" RELATED LATIN [NeuroNames:294] @@ -36386,7 +36386,7 @@ subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "mesencephalic tegmentum" RELATED [VHOG:0001367] -synonym: "MTg" BROAD ABBREVIATION [BIRNLEX:1200, NIFSTD:NeuroNames_abbrevSource] +synonym: "MTg" BROAD OMO:0003000 [BIRNLEX:1200, NIFSTD:NeuroNames_abbrevSource] synonym: "tegmentum" BROAD [ISBN:0471888893] synonym: "tegmentum mesencephali" EXACT LATIN [Wikipedia:Midbrain_tegmentum] synonym: "tegmentum mesencephalicum" RELATED LATIN [NeuroNames:491] @@ -36590,7 +36590,7 @@ synonym: "nucleus ruber" EXACT LATIN [TAO:0000552] synonym: "nucleus ruber" RELATED LATIN [Wikipedia:Red_nucleus] synonym: "nucleus ruber tegmenti" RELATED LATIN [MP:MP] synonym: "nucleus ruber tegmenti (Stilling)" RELATED LATIN [NeuroNames:505] -synonym: "R" BROAD ABBREVIATION [BIRNLEX:1478, NIFSTD:NeuroNames_abbrevSource] +synonym: "R" BROAD OMO:0003000 [BIRNLEX:1478, NIFSTD:NeuroNames_abbrevSource] synonym: "red nucleus (Burdach)" RELATED [NeuroNames:505] xref: BAMS:R xref: BAMS:RN @@ -36968,7 +36968,7 @@ id: UBERON:0001960 name: periarterial lymphatic sheath def: "The area of the spleen in which T cells surround the central arteriole." [MP:0002358] subset: pheno_slim -synonym: "PALS" EXACT ABBREVIATION [MP:0002358] +synonym: "PALS" EXACT OMO:0003000 [MP:0002358] synonym: "periarterial lymphoid sheath" EXACT [] synonym: "periarteriolar sheath" EXACT [MP:0002358] synonym: "spleen periarteriolar lymphatic sheath" EXACT [] @@ -37073,7 +37073,7 @@ synonym: "nucleus substantiae nigrae, pars compacta" RELATED LATIN [NeuroNames:5 synonym: "pars compacta" EXACT [] synonym: "pars compacta of substantia nigra" RELATED [NeuroNames:537] synonym: "pars compacta substantiae nigrae" EXACT LATIN [FMA:62907, FMA:TA] -synonym: "SNC" BROAD ABBREVIATION [BIRNLEX:990, NIFSTD:NeuroNames_abbrevSource] +synonym: "SNC" BROAD OMO:0003000 [BIRNLEX:990, NIFSTD:NeuroNames_abbrevSource] synonym: "SNpc" EXACT [] synonym: "substantia nigra compact part" EXACT [BIRNLEX:990] synonym: "substantia nigra compacta" EXACT [BIRNLEX:990] @@ -37115,8 +37115,8 @@ synonym: "pars reticularis" EXACT LATIN [FMA:62908, FMA:TA] synonym: "pars reticularis substantiae nigrae" EXACT LATIN [FMA:62908, FMA:TA] synonym: "pars reticulata" EXACT [] synonym: "reticular part of substantia nigra" EXACT [] -synonym: "SNPR" BROAD ABBREVIATION [MP:0000836] -synonym: "SNR" BROAD ABBREVIATION [BIRNLEX:968, NIFSTD:NeuroNames_abbrevSource] +synonym: "SNPR" BROAD OMO:0003000 [MP:0000836] +synonym: "SNR" BROAD OMO:0003000 [BIRNLEX:968, NIFSTD:NeuroNames_abbrevSource] synonym: "substantia nigra reticular part" RELATED [BAMS:SNR, BAMS:SNr] synonym: "substantia nigra, pars compacta" RELATED LATIN [NeuroNames:537] synonym: "substantia nigra, pars diffusa" EXACT LATIN [FMA:62908, FMA:TA] @@ -37799,7 +37799,7 @@ subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "ganglion cervicale superius" RELATED LATIN [BTO:0001325, Wikipedia:Superior_cervical_ganglion] -synonym: "SCG" RELATED ABBREVIATION [ZFA:0001572] +synonym: "SCG" RELATED OMO:0003000 [ZFA:0001572] synonym: "superior cervical sympathetic ganglion" EXACT [] synonym: "superior sympathetic cervical ganglion" RELATED [] xref: BAMS:GSC @@ -38014,7 +38014,7 @@ subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "main olfactory epithelium" EXACT [NCBIBook:NBK55971] -synonym: "MOE" RELATED ABBREVIATION [NCBIBook:NBK55971] +synonym: "MOE" RELATED OMO:0003000 [NCBIBook:NBK55971] synonym: "nasal cavity olfactory epithelium" EXACT [MA:0001325] synonym: "nasal epithelium" RELATED [] synonym: "nasal sensory epithelium" RELATED [] @@ -38712,7 +38712,7 @@ subset: uberon_slim synonym: "central lobe" EXACT [FMA:67329] synonym: "cortex insularis" RELATED LATIN [NeuroNames:111] synonym: "cortex of island" EXACT [FMA:67329] -synonym: "iNS" BROAD ABBREVIATION [FMA:67329, FMA:CMA] +synonym: "iNS" BROAD OMO:0003000 [FMA:67329, FMA:CMA] synonym: "insula cerebri" RELATED LATIN [NeuroNames:111] synonym: "insula lobule" EXACT [FMA:67329] synonym: "insula of Reil" RELATED [NeuroNames:111] @@ -39117,8 +39117,8 @@ subset: uberon_slim subset: vertebrate_core synonym: "nucleus suprachiasmaticus" RELATED LATIN [Wikipedia:Suprachiasmatic_nucleus] synonym: "nucleus suprachiasmaticus hypothalami" RELATED LATIN [NeuroNames:384] -synonym: "SCh" BROAD ABBREVIATION [BIRNLEX:1325, NIFSTD:NeuroNames_abbrevSource] -synonym: "SCN" BROAD ABBREVIATION [BIRNLEX:1325, NIFSTD:NeuroNames_abbrevSource] +synonym: "SCh" BROAD OMO:0003000 [BIRNLEX:1325, NIFSTD:NeuroNames_abbrevSource] +synonym: "SCN" BROAD OMO:0003000 [BIRNLEX:1325, NIFSTD:NeuroNames_abbrevSource] synonym: "SCN" RELATED [BTO:0001822] synonym: "suprachiasmatic nucleus (Spiegel-Zwieg)" RELATED [NeuroNames:384] synonym: "suprachiasmatic nucleus of hypothalamus" EXACT [] @@ -39169,7 +39169,7 @@ subset: uberon_slim synonym: "area praeoptica medialis" RELATED LATIN [NeuroNames:380] synonym: "area preopticus medialis" RELATED LATIN [NeuroNames:380] synonym: "medial preoptic hypothalamic nucleus" EXACT [] -synonym: "MPO" BROAD ABBREVIATION [BIRNLEX:706, NIFSTD:NeuroNames_abbrevSource] +synonym: "MPO" BROAD OMO:0003000 [BIRNLEX:706, NIFSTD:NeuroNames_abbrevSource] synonym: "nucleus praeopticus medialis" RELATED LATIN [NeuroNames:380] synonym: "nucleus preopticus medialis" RELATED LATIN [NeuroNames:380] xref: BAMS:MPO @@ -39289,7 +39289,7 @@ subset: pheno_slim subset: uberon_slim synonym: "nucleus of basis pedunculi" EXACT [] synonym: "nucleus pigmentosus subthalamo-peduncularis" RELATED LATIN [NeuroNames:536] -synonym: "SN" BROAD ABBREVIATION [BIRNLEX:789, NIFSTD:NeuroNames_abbrevSource] +synonym: "SN" BROAD OMO:0003000 [BIRNLEX:789, NIFSTD:NeuroNames_abbrevSource] synonym: "Soemmering's substance" EXACT [] synonym: "substancia nigra" RELATED [Wikipedia:Substantia_nigra] synonym: "substantia nigra (Soemmerringi)" RELATED LATIN [NeuroNames:536] @@ -39415,8 +39415,8 @@ synonym: "dorsal nucleus of the raphe" EXACT [BrainInfo:512, FMA:68462] synonym: "dorsal nucleus raphe" EXACT [FMA:68462] synonym: "dorsal raphe" EXACT [BIRNLEX:982] synonym: "dorsal raphé" RELATED [BAMS:DR] -synonym: "DR" BROAD ABBREVIATION [BIRNLEX:982, NIFSTD:NeuroNames_abbrevSource] -synonym: "DRN" BROAD ABBREVIATION [BIRNLEX:982, NIFSTD:NeuroNames_abbrevSource] +synonym: "DR" BROAD OMO:0003000 [BIRNLEX:982, NIFSTD:NeuroNames_abbrevSource] +synonym: "DRN" BROAD OMO:0003000 [BIRNLEX:982, NIFSTD:NeuroNames_abbrevSource] synonym: "inferior raphe nucleus" EXACT [GO:0021724] synonym: "nucleus dorsalis raphes" RELATED LATIN [NeuroNames:512] synonym: "nucleus raphe dorsalis" RELATED LATIN [Wikipedia:Dorsal_raphe_nucleus] @@ -39456,7 +39456,7 @@ id: UBERON:0002044 name: ventral nucleus of posterior commissure synonym: "Darkshevich nucleus" EXACT [] synonym: "Darkshevich's nucleus" EXACT [FMA:68464] -synonym: "Dk" BROAD ABBREVIATION [BIRNLEX:896, NIFSTD:NeuroNames_abbrevSource] +synonym: "Dk" BROAD OMO:0003000 [BIRNLEX:896, NIFSTD:NeuroNames_abbrevSource] synonym: "nucleus accessorius" RELATED LATIN [NeuroNames:514] synonym: "nucleus commissurae posterioris (Riley)" RELATED LATIN [NeuroNames:514] synonym: "nucleus Darkschewitsch" RELATED LATIN [NeuroNames:514] @@ -39491,7 +39491,7 @@ def: "One of the dorsal column nuclei, the cuneate nucleus is a wedge-shaped nuc subset: uberon_slim synonym: "Burdach's nucleus" EXACT [] synonym: "burdachs nucleus" EXACT [BIRNLEX:2640] -synonym: "Cu" BROAD ABBREVIATION [BIRNLEX:2640, NIFSTD:NeuroNames_abbrevSource] +synonym: "Cu" BROAD OMO:0003000 [BIRNLEX:2640, NIFSTD:NeuroNames_abbrevSource] synonym: "cuneate" EXACT [BIRNLEX:2640] synonym: "cuneate nucleus (Burdach)" RELATED [NeuroNames:767] synonym: "cuneate nucleus of the medulla" RELATED [NeuroNames:767] @@ -40723,7 +40723,7 @@ subset: vertebrate_core synonym: "atrial canal" EXACT [Wikipedia:Atrial_canal] synonym: "atrio-ventricular canal" EXACT [EHDAA2:0000152] synonym: "AV canal" EXACT [] -synonym: "AVC" EXACT ABBREVIATION [ZFA:0001315] +synonym: "AVC" EXACT OMO:0003000 [ZFA:0001315] synonym: "canalis atrioventricularis" RELATED LATIN [Wikipedia:Atrioventricular_canal] synonym: "ependymal canal" RELATED [EMAPA:16546] xref: EHDAA:764 @@ -42323,7 +42323,7 @@ synonym: "habenulointerpeduncular fasciculus" EXACT [] synonym: "habenulointerpeduncular tract" RELATED [] synonym: "habenulopeduncular tract" EXACT [] synonym: "Meynert's retroflex bundle" EXACT [] -synonym: "rf" RELATED ABBREVIATION [DMBA:17790] +synonym: "rf" RELATED OMO:0003000 [DMBA:17790] synonym: "tractus habenulo-intercruralis" RELATED LATIN [NeuroNames:2318] synonym: "tractus habenulo-interpeduncularis" EXACT [ZFA:0000353] synonym: "tractus habenulointercruralis" RELATED LATIN [NeuroNames:2318] @@ -42424,7 +42424,7 @@ subset: vertebrate_core synonym: "accessory oculomotor nucleus" EXACT [Wikipedia:Edinger-westphal_nucleus] synonym: "Edinger-Westphal nucleus" EXACT [MA:0001071, Wikipedia:Edinger-westphal_nucleus] synonym: "Edinger-Westphal nucleus of oculomotor nerve" RELATED [NeuroNames:498] -synonym: "EW" BROAD ABBREVIATION [HBA:9449] +synonym: "EW" BROAD OMO:0003000 [HBA:9449] synonym: "nuclei accessorii nervi oculomtorii (Edinger-Westphal)" RELATED LATIN [NeuroNames:498] synonym: "nucleus Edinger Westphal" RELATED LATIN [NeuroNames:498] synonym: "nucleus Edinger-Westphal" EXACT [ZFA:0000244] @@ -42434,7 +42434,7 @@ synonym: "nucleus rostralis nervi oculomotorii" RELATED LATIN [NeuroNames:498] synonym: "nucleus Westphal-Edinger" RELATED LATIN [NeuroNames:498] synonym: "oculomotor nucleus, parvicellular part" RELATED [NeuroNames:498] synonym: "oculomotor nucleus, parvocellular part" RELATED INCONSISTENT [BIRNLEX:822] -synonym: "PC3" BROAD ABBREVIATION [BIRNLEX:822, NIFSTD:NeuroNames_abbrevSource] +synonym: "PC3" BROAD OMO:0003000 [BIRNLEX:822, NIFSTD:NeuroNames_abbrevSource] xref: BAMS:EW xref: BAMS:PC3 xref: BIRNLEX:822 @@ -42476,7 +42476,7 @@ synonym: "nucleus pedunculopontinus" RELATED LATIN [NeuroNames:504] synonym: "nucleus tegmenti pedunculopontinus" RELATED LATIN [NeuroNames:504] synonym: "peduncular pontine nucleus" EXACT [] synonym: "pedunculopontine nucleus" EXACT [] -synonym: "PPTg" BROAD ABBREVIATION [BIRNLEX:1437, NIFSTD:NeuroNames_abbrevSource] +synonym: "PPTg" BROAD OMO:0003000 [BIRNLEX:1437, NIFSTD:NeuroNames_abbrevSource] xref: BAMS:PPN xref: BAMS:PPTg xref: BIRNLEX:1437 @@ -42502,8 +42502,8 @@ name: dorsal tegmental nucleus subset: vertebrate_core synonym: "dorsal tegmental nucleus (Gudden)" EXACT [] synonym: "dorsal tegmental nucleus of Gudden" EXACT [BIRNLEX:992] -synonym: "DTg" BROAD ABBREVIATION [BIRNLEX:992, NIFSTD:NeuroNames_abbrevSource] -synonym: "DTN" RELATED ABBREVIATION [ZFA:0000346] +synonym: "DTg" BROAD OMO:0003000 [BIRNLEX:992, NIFSTD:NeuroNames_abbrevSource] +synonym: "DTN" RELATED OMO:0003000 [ZFA:0000346] synonym: "ganglion dorsale tegmenti" RELATED LATIN [NeuroNames:517] synonym: "gudden nucleus" EXACT [] synonym: "nucleus compactus suprafascicularis" RELATED LATIN [NeuroNames:517] @@ -42551,7 +42551,7 @@ def: "A group of neuron cell bodies that form a thin, caplike configuration over synonym: "nucleus peripeduncularis" RELATED LATIN [NeuroNames:520] synonym: "nucleus peripeduncularis thalami" RELATED LATIN [NeuroNames:520] synonym: "peripeduncular nucleus of pons" EXACT [FMA:72437] -synonym: "PPd" BROAD ABBREVIATION [BIRNLEX:1474, NIFSTD:NeuroNames_abbrevSource] +synonym: "PPd" BROAD OMO:0003000 [BIRNLEX:1474, NIFSTD:NeuroNames_abbrevSource] xref: BAMS:PP xref: BAMS:PPd xref: BIRNLEX:1474 @@ -42584,7 +42584,7 @@ synonym: "interpeduncular nuclei" EXACT PLURAL [] synonym: "interpeduncular nucleus (Gudden)" RELATED [NeuroNames:522] synonym: "interpeduncular nucleus of midbrain" EXACT [] synonym: "interpeduncular nucleus tegmentum" RELATED [TAO:0000903] -synonym: "IP" BROAD ABBREVIATION [BIRNLEX:1000, NIFSTD:NeuroNames_abbrevSource] +synonym: "IP" BROAD OMO:0003000 [BIRNLEX:1000, NIFSTD:NeuroNames_abbrevSource] synonym: "nucleus interpeduncularis" RELATED LATIN [NeuroNames:522] synonym: "nucleus interpeduncularis medialis" RELATED LATIN [NeuroNames:522] xref: BAMS:IPN @@ -42774,7 +42774,7 @@ synonym: "crus cerebello-cerebrale" RELATED LATIN [NeuroNames:1736] synonym: "pedunculus cerebellaris cranialis" RELATED LATIN [NeuroNames:1736] synonym: "pedunculus cerebellaris rostralis" RELATED LATIN [NeuroNames:1736] synonym: "pedunculus cerebellaris superior" RELATED LATIN [Wikipedia:Superior_cerebellar_peduncle] -synonym: "scp" RELATED ABBREVIATION [MBA:326] +synonym: "scp" RELATED OMO:0003000 [MBA:326] synonym: "superior cerebelar peduncles" RELATED MISSPELLING [MBA:326] synonym: "superior cerebellar peduncle (brachium conjuctivum)" RELATED [BAMS:scp] synonym: "superior cerebellar peduncle (brachium conjunctivum)" RELATED [BAMS:scp] @@ -43113,7 +43113,7 @@ synonym: "nucleus prepositus hypoglossus" RELATED [] synonym: "prepositus hypoglossal nucleus" EXACT [] synonym: "prepositus nucleus" EXACT [] synonym: "prepositus nucleus (Marburg)" RELATED [NeuroNames:758] -synonym: "PrP" BROAD ABBREVIATION [BIRNLEX:2652, NIFSTD:NeuroNames_abbrevSource] +synonym: "PrP" BROAD OMO:0003000 [BIRNLEX:2652, NIFSTD:NeuroNames_abbrevSource] xref: BAMS:Pr xref: BAMS:PRP xref: BAMS:PrP @@ -43175,7 +43175,7 @@ def: "A small, rounded eminence on each side of the fourth ventricle, which rece subset: pheno_slim subset: uberon_slim subset: vertebrate_core -synonym: "AP" BROAD ABBREVIATION [BIRNLEX:2636, NIFSTD:NeuroNames_abbrevSource] +synonym: "AP" BROAD OMO:0003000 [BIRNLEX:2636, NIFSTD:NeuroNames_abbrevSource] synonym: "chemoreceptor trigger zone" RELATED [NeuroNames:772] xref: BAMS:AP xref: BIRNLEX:2636 @@ -44072,7 +44072,7 @@ subset: efo_slim subset: pheno_slim subset: uberon_slim subset: vertebrate_core -synonym: "AHP" BROAD ABBREVIATION [BIRNLEX:1581, NIFSTD:NeuroNames_abbrevSource] +synonym: "AHP" BROAD OMO:0003000 [BIRNLEX:1581, NIFSTD:NeuroNames_abbrevSource] synonym: "anterior hypophysis" EXACT [ZFA:0001282] synonym: "anterior lobe (hypophysis)" EXACT [] synonym: "anterior lobe of hypophysis" EXACT [] @@ -44142,7 +44142,7 @@ synonym: "eminentia mediana" RELATED LATIN [NeuroNames:402] synonym: "eminentia mediana hypothalami" EXACT LATIN [FMA:74634, FMA:TA] synonym: "eminentia mediana hypothalami" RELATED LATIN [Wikipedia:Median_eminence] synonym: "eminentia postinfundibularis" RELATED LATIN [NeuroNames:402] -synonym: "ME" BROAD ABBREVIATION [BIRNLEX:925, NIFSTD:NeuroNames_abbrevSource] +synonym: "ME" BROAD OMO:0003000 [BIRNLEX:925, NIFSTD:NeuroNames_abbrevSource] synonym: "medial eminence" RELATED [NeuroNames:402] synonym: "median eminence" EXACT [] synonym: "median eminence of hypothalamus" EXACT [] @@ -44194,7 +44194,7 @@ synonym: "neural lobe of pituitary" EXACT [BIRNLEX:1586] synonym: "neural lobe of pituitary gland" EXACT [FMA:74628] synonym: "neuro hypophysis" EXACT [] synonym: "neurohypophysis" EXACT [] -synonym: "NHP" BROAD ABBREVIATION [BIRNLEX:1586, NIFSTD:NeuroNames_abbrevSource] +synonym: "NHP" BROAD OMO:0003000 [BIRNLEX:1586, NIFSTD:NeuroNames_abbrevSource] synonym: "pituitary gland neural lobe" RELATED [BAMS:NL] synonym: "pituitary gland, neural lobe" RELATED [NeuroNames:401] synonym: "pituitary gland, posterior lobe" EXACT [] @@ -44447,7 +44447,7 @@ synonym: "corpus mamillare" RELATED LATIN [Wikipedia:Mammillary_body] synonym: "corpus mamillaris" RELATED LATIN [NeuroNames:412] synonym: "corpus mammillare" RELATED LATIN [NeuroNames:412] synonym: "mammillary area" RELATED [DMBA:Mam] -synonym: "MMB" BROAD ABBREVIATION [BIRNLEX:865, NIFSTD:NeuroNames_abbrevSource] +synonym: "MMB" BROAD OMO:0003000 [BIRNLEX:865, NIFSTD:NeuroNames_abbrevSource] xref: BAMS:MB xref: BAMS:MBO xref: BAMS:mmb @@ -45281,7 +45281,7 @@ synonym: "cerebrocerebellar fissure" RELATED [NeuroNames:22] synonym: "fissura cerebro-cerebellaris" RELATED LATIN [NeuroNames:22] synonym: "fissura cerebrocerebellaris" RELATED LATIN [NeuroNames:22] synonym: "medulla spinalis" RELATED LATIN [BTO:0001279, Wikipedia:Spinal_cord] -synonym: "SpC" RELATED ABBREVIATION [] +synonym: "SpC" RELATED OMO:0003000 [] synonym: "spinal cord structure" RELATED [ZFA:0000075] synonym: "spinal medulla" RELATED [BTO:0001279] xref: AAO:0010151 @@ -48045,7 +48045,7 @@ subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "crista neuralis" RELATED LATIN [Wikipedia:Neural_crest] -synonym: "NC" EXACT ABBREVIATION [XAO:0000048] +synonym: "NC" EXACT OMO:0003000 [XAO:0000048] synonym: "neural crest material" RELATED [VHOG:0000057] xref: AAO:0010578 xref: BTO:0001764 @@ -48400,7 +48400,7 @@ synonym: "atrioventricular bundle" EXACT [] synonym: "atrioventricular bundle muscle tissue" EXACT [FMA:9484] synonym: "atrioventricular fasciculus" EXACT [FMA:9484] synonym: "AV bundle" EXACT [] -synonym: "AVB" EXACT ABBREVIATION [] +synonym: "AVB" EXACT OMO:0003000 [] synonym: "bundle of His" EXACT [FMA:9484, GO:0003166] synonym: "fasciculus atrioventricularis" EXACT LATIN [Wikipedia:Bundle_of_His] synonym: "His bundle" EXACT [] @@ -50239,7 +50239,7 @@ def: "The autonomic nervous system is composed of neurons that are not under con subset: pheno_slim subset: uberon_slim subset: vertebrate_core -synonym: "ANS" RELATED ABBREVIATION [] +synonym: "ANS" RELATED OMO:0003000 [] synonym: "autonomic division of peripheral nervous system" EXACT [FMA:65553] synonym: "autonomic part of peripheral nervous system" EXACT [FMA:65553] synonym: "divisio autonomica systematis nervosi peripherici" EXACT [FMA:TA] @@ -50856,7 +50856,7 @@ synonym: "lateral hypothalamic group" EXACT [] synonym: "lateral hypothalamic nucleus" RELATED [MA:0000834] synonym: "lateral hypothalamic region" EXACT [FMA:62030] synonym: "lateral hypothalamic zone (Crosby)" EXACT [] -synonym: "LH" BROAD ABBREVIATION [BIRNLEX:4037, NIFSTD:NeuroNames_abbrevSource] +synonym: "LH" BROAD OMO:0003000 [BIRNLEX:4037, NIFSTD:NeuroNames_abbrevSource] xref: BAMS:HLA xref: BAMS:LH xref: BAMS:LHA @@ -50966,7 +50966,7 @@ subset: vertebrate_core synonym: "hypophyseal infundibulum" RELATED [BIRNLEX:1248] synonym: "hypophyseal stalk" EXACT [MP:0009463] synonym: "hypophysial stalk" RELATED [ZFA:0001199] -synonym: "InfS" BROAD ABBREVIATION [BIRNLEX:1248, NIFSTD:NeuroNames_abbrevSource] +synonym: "InfS" BROAD OMO:0003000 [BIRNLEX:1248, NIFSTD:NeuroNames_abbrevSource] synonym: "infundibular stalk" EXACT [BIRNLEX:1248] synonym: "infundibular stem" BROAD [MP:0009463] synonym: "infundibular stem" EXACT HUMAN_PREFERRED [BIRNLEX:1248] @@ -50983,7 +50983,7 @@ synonym: "infundibulum of posterior lobe of pituitary gland" RELATED [BIRNLEX:12 synonym: "neurohypophysis infundibulum" EXACT [FMA:74635] synonym: "pars tuberalis (hypophysis)" RELATED LATIN [NeuroNames:408] synonym: "pituitary infundibular stalk" EXACT [] -synonym: "THP" BROAD ABBREVIATION [BIRNLEX:912, NIFSTD:NeuroNames_abbrevSource] +synonym: "THP" BROAD OMO:0003000 [BIRNLEX:912, NIFSTD:NeuroNames_abbrevSource] synonym: "tuberal part of hypophysis" EXACT [FMA:74635] synonym: "tuberal part of the hypophysis" RELATED [NeuroNames:408] xref: BAMS:INF @@ -51162,7 +51162,7 @@ synonym: "ventral raphe tegmental nucleus" EXACT [FMA:72435] synonym: "ventral tegmental nuclei" EXACT [FMA:72435] synonym: "ventral tegmental nucleus (gudden)" EXACT [FMA:72435] synonym: "ventral tegmental nucleus of Gudden" EXACT [FMA:72435] -synonym: "VTg" BROAD ABBREVIATION [BIRNLEX:1421, NIFSTD:NeuroNames_abbrevSource] +synonym: "VTg" BROAD OMO:0003000 [BIRNLEX:1421, NIFSTD:NeuroNames_abbrevSource] xref: BAMS:VTg xref: BAMS:VTN xref: BIRNLEX:1421 @@ -52259,7 +52259,7 @@ id: UBERON:0002479 name: dorsal lateral geniculate nucleus def: "The main division of the lateral geniculate body; consists of two magnocellular layers [TA] (strata magnocellularia [TA]) and four parvocellular layers [TA] (strata parvocellularia [TA]) and serves as a processing station in the major pathway from the retina to the cerebral cortex, receiving fibers from the optic tract and giving rise to the geniculocalcarine radiation to the visual cortex in the occipital lobe." [http://www.medilexicon.com/medicaldictionary.php?t=61422] synonym: "corpus geniculatum laterale (Hassler)" RELATED LATIN [NeuroNames:353] -synonym: "DLG" BROAD ABBREVIATION [BIRNLEX:1595, NIFSTD:NeuroNames_abbrevSource] +synonym: "DLG" BROAD OMO:0003000 [BIRNLEX:1595, NIFSTD:NeuroNames_abbrevSource] synonym: "dorsal nucleus of lateral geniculate body" RELATED [MA:0002775] synonym: "dorsal part of the lateral geniculate complex" RELATED [NeuroNames:353] synonym: "lateral geniculate complex, dorsal part" EXACT [] @@ -52294,7 +52294,7 @@ id: UBERON:0002480 name: ventral lateral geniculate nucleus synonym: "corpus geniculatum externum, nucleus accessorius" EXACT [BIRNLEX:1597] synonym: "corpus geniculatum laterale, pars oralis" EXACT [BIRNLEX:1597] -synonym: "DLG" BROAD ABBREVIATION [BIRNLEX:1597, NIFSTD:NeuroNames_abbrevSource] +synonym: "DLG" BROAD OMO:0003000 [BIRNLEX:1597, NIFSTD:NeuroNames_abbrevSource] synonym: "dorsal_nucleus_of_lateral_geniculate_body" EXACT [BIRNLEX:1597] synonym: "griseum praegeniculatum" EXACT [BIRNLEX:1597] synonym: "lateral geniculate complex, ventral part" EXACT [] @@ -53910,7 +53910,7 @@ relationship: part_of UBERON:0003023 {source="FMA"} ! pontine tegmentum [Term] id: UBERON:0002550 name: anterior hypothalamic region -synonym: "AHR" BROAD ABBREVIATION [BIRNLEX:1005, NIFSTD:NeuroNames_abbrevSource] +synonym: "AHR" BROAD OMO:0003000 [BIRNLEX:1005, NIFSTD:NeuroNames_abbrevSource] synonym: "anterior hypothalamic area" EXACT [DHBA:266441551] synonym: "chiasmal zone" EXACT [FMA:62027] synonym: "preoptic division" RELATED [NeuroNames:376] @@ -53933,14 +53933,14 @@ relationship: part_of UBERON:0001898 ! hypothalamus id: UBERON:0002551 name: interstitial nucleus of Cajal def: "The largest and most prominent of the cell groups of the medial longitudinal fasciculus." [http://orcid.org/0000-0002-6601-2165] -synonym: "ICjl" BROAD ABBREVIATION [BIRNLEX:1008, NIFSTD:NeuroNames_abbrevSource] +synonym: "ICjl" BROAD OMO:0003000 [BIRNLEX:1008, NIFSTD:NeuroNames_abbrevSource] synonym: "interstitial nucleus" BROAD [FMA:72432] synonym: "interstitial nucleus of Cajal" RELATED [BAMS:INC] synonym: "interstitial nucleus of medial longitudinal fasciculus" EXACT [FMA:72432] synonym: "interstitial nucleus of medial longitudinal fasciculus (Crosby)" EXACT [] synonym: "interstitial nucleus of the medial longitudinal fascicle (Boyce 1895)" RELATED [NeuroNames:515] synonym: "interstitial nucleus of the medial longitudinal fasciculus" RELATED [BAMS:IMLF] -synonym: "NIC" EXACT ABBREVIATION [] +synonym: "NIC" EXACT OMO:0003000 [] synonym: "nucleus interstitialis" EXACT LATIN [FMA:72432, FMA:TA] synonym: "nucleus interstitialis Cajal" RELATED LATIN [NeuroNames:515] synonym: "nucleus of the posterior commissure (Kvlliker)" RELATED [NeuroNames:515] @@ -54011,7 +54011,7 @@ name: intermediate hypothalamic region def: "The portion of the hypothalamus located generally internal to the region of the infundibulum." [http://medical-dictionary.thefreedictionary.com] comment: ) synonym: "area hypothalamica intermedia" EXACT LATIN [FMA:62028, FMA:TA] -synonym: "IHR" BROAD ABBREVIATION [BIRNLEX:1015, NIFSTD:NeuroNames_abbrevSource] +synonym: "IHR" BROAD OMO:0003000 [BIRNLEX:1015, NIFSTD:NeuroNames_abbrevSource] synonym: "intermediate hypothalamic area" EXACT [FMA:62028] synonym: "intermediate hypothalamus" RELATED [TAO:0006000] synonym: "medial hypothalamus" RELATED [MESH:A08.186.211.730.385.357.352] @@ -54054,7 +54054,7 @@ relationship: part_of UBERON:0002314 {source="NIFSTD"} ! midbrain tectum id: UBERON:0002557 name: linear nucleus comment: The mesocorticolimbic dopamine (DA) system plays important roles in reward, motivation, learning, memory, and movement. This system arises from the A10 region, comprising the ventral tegmental area and three adjacent midline nuclei (caudal linear nucleus, interfascicular nucleus, and rostral linear nucleus of the raphe)[PMID:21653852] -synonym: "Li" BROAD ABBREVIATION [BIRNLEX:1018, NIFSTD:NeuroNames_abbrevSource] +synonym: "Li" BROAD OMO:0003000 [BIRNLEX:1018, NIFSTD:NeuroNames_abbrevSource] synonym: "nucleus linearis" RELATED LATIN [NeuroNames:519] synonym: "rostral and caudal linear nuclei of the raphe" RELATED [NeuroNames:519] xref: BIRNLEX:1018 @@ -54162,7 +54162,7 @@ id: UBERON:0002562 name: superior frontal sulcus def: "The superior frontal sulcus is a sulcus between the superior frontal gyrus and the middle frontal gyrus. [WP,unvetted]." [Wikipedia:Superior_frontal_sulcus] subset: uberon_slim -synonym: "SFRS" BROAD ABBREVIATION [BIRNLEX:1030, NIFSTD:NeuroNames_abbrevSource] +synonym: "SFRS" BROAD OMO:0003000 [BIRNLEX:1030, NIFSTD:NeuroNames_abbrevSource] synonym: "sulcus f1" EXACT [FMA:83755] synonym: "sulcus frontalis primus" EXACT [BIRNLEX:1030] synonym: "sulcus frontalis superior" EXACT [BIRNLEX:1030] @@ -54271,7 +54271,7 @@ property_value: editor_note "B&H states this present in urodeles; modify definit id: UBERON:0002566 name: superior precentral sulcus synonym: "precentral dimple" EXACT [FMA:83763] -synonym: "SPRS" BROAD ABBREVIATION [BIRNLEX:1038, NIFSTD:NeuroNames_abbrevSource] +synonym: "SPRS" BROAD OMO:0003000 [BIRNLEX:1038, NIFSTD:NeuroNames_abbrevSource] synonym: "sulcus praecentralis superior" EXACT [BIRNLEX:1038] synonym: "sulcus precentralis superior" EXACT [BIRNLEX:1038] synonym: "superior part of precentral fissure" EXACT [FMA:83763] @@ -54582,7 +54582,7 @@ property_value: depicted_by "https://upload.wikimedia.org/wikipedia/commons/6/66 [Term] id: UBERON:0002582 name: anterior calcarine sulcus -synonym: "ACCS" BROAD ABBREVIATION [BIRNLEX:1072, NIFSTD:NeuroNames_abbrevSource] +synonym: "ACCS" BROAD OMO:0003000 [BIRNLEX:1072, NIFSTD:NeuroNames_abbrevSource] synonym: "anterior calcarine fissure" EXACT [FMA:83750] synonym: "sulcus calcarinus anterior" EXACT [BIRNLEX:1072] xref: BAMS:accs @@ -54648,7 +54648,7 @@ consider: FMA:71267 id: UBERON:0002585 name: central tegmental tract of midbrain synonym: "central tegmental tract of the midbrain" RELATED [NeuroNames:528] -synonym: "CTGMB" BROAD ABBREVIATION [BIRNLEX:1081, NIFSTD:NeuroNames_abbrevSource] +synonym: "CTGMB" BROAD OMO:0003000 [BIRNLEX:1081, NIFSTD:NeuroNames_abbrevSource] synonym: "tractus tegmentalis centralis (mesencephali)" RELATED LATIN [NeuroNames:528] xref: BAMS:ctgmb xref: BIRNLEX:1081 @@ -54666,7 +54666,7 @@ name: calcarine sulcus def: "The calcarine fissure is an anatomical landmark located at the caudal end of the medial surface of the brain. [WP,unvetted]." [Wikipedia:Calcarine_sulcus] subset: uberon_slim synonym: "calcarine fissure" EXACT [FMA:83749] -synonym: "CCS" BROAD ABBREVIATION [BIRNLEX:1086, NIFSTD:NeuroNames_abbrevSource] +synonym: "CCS" BROAD OMO:0003000 [BIRNLEX:1086, NIFSTD:NeuroNames_abbrevSource] synonym: "fissura calcarina" RELATED LATIN [NeuroNames:44] synonym: "sulcus calcarinus" EXACT [BIRNLEX:1086] xref: BIRNLEX:1086 @@ -54878,7 +54878,7 @@ name: dentatothalamic tract def: "The dentatothalamic tract (or dentatorubrothalamic tract) is a tract which connects the dentate nucleus and the thalamus. [WP,unvetted]." [Wikipedia:Dentatothalamic_tract] subset: uberon_slim synonym: "dentatothalamic fibers" EXACT [FMA:72462] -synonym: "DT" BROAD ABBREVIATION [BIRNLEX:1104, NIFSTD:NeuroNames_abbrevSource] +synonym: "DT" BROAD OMO:0003000 [BIRNLEX:1104, NIFSTD:NeuroNames_abbrevSource] synonym: "tractus dentatothalamicus" RELATED LATIN [Wikipedia:Dentatothalamic_tract] xref: BAMS:dt xref: BIRNLEX:1104 @@ -54896,7 +54896,7 @@ name: orbital sulcus def: "The inferior or orbital surface of the frontal lobe is concave, and rests on the orbital plate of the frontal bone. It is divided into four orbital gyri by a well-marked H-shaped orbital sulcus." [Wikipedia:Orbital_sulcus] synonym: "cruciate sulcus of campbell" EXACT [BIRNLEX:1112] synonym: "orbital sulci" EXACT PLURAL [FMA:83770] -synonym: "ORBS" BROAD ABBREVIATION [BIRNLEX:1112, NIFSTD:NeuroNames_abbrevSource] +synonym: "ORBS" BROAD OMO:0003000 [BIRNLEX:1112, NIFSTD:NeuroNames_abbrevSource] synonym: "sulci orbitales" RELATED LATIN [NeuroNames:79] synonym: "sulci orbitalis" EXACT LATIN [] synonym: "sulcus orbitalis" EXACT [BIRNLEX:1112] @@ -54932,7 +54932,7 @@ synonym: "ventrobasal nucleus" EXACT [FMA:62187] synonym: "ventroposterior inferior nucleus" RELATED [BTO:0004374] synonym: "ventroposterior nucleus" RELATED [BTO:0004373] synonym: "ventroposterior nucleus of thalamus" RELATED [BAMS:VP] -synonym: "VP" BROAD ABBREVIATION [BIRNLEX:1116, NIFSTD:NeuroNames_abbrevSource] +synonym: "VP" BROAD OMO:0003000 [BIRNLEX:1116, NIFSTD:NeuroNames_abbrevSource] synonym: "VPN" RELATED [BTO:0004373] xref: BAMS:VP xref: BIRNLEX:1116 @@ -55015,7 +55015,7 @@ property_value: depicted_by "http://upload.wikimedia.org/wikipedia/commons/3/30/ id: UBERON:0002598 name: paracentral sulcus def: "The paracentral sulcus is a sulcus of the brain. It forms the paracentral lobule's anterior border." [Wikipedia:Paracentral_sulcus] -synonym: "PCS" BROAD ABBREVIATION [BIRNLEX:1121, NIFSTD:NeuroNames_abbrevSource] +synonym: "PCS" BROAD OMO:0003000 [BIRNLEX:1121, NIFSTD:NeuroNames_abbrevSource] synonym: "sulcus paracentralis" RELATED LATIN [NeuroNames:70] synonym: "sulcus subcentralis medialis" EXACT [BIRNLEX:1121] xref: BIRNLEX:1121 @@ -55077,7 +55077,7 @@ def: "A small paired band that passes around the splenium of the corpus callosum synonym: "fasciola cinerea" RELATED [BTO:0002497, neuronames:176] synonym: "fasciola cinerea (Reil, Arnold)" RELATED [NeuroNames:176] synonym: "fasciola cinereum" RELATED [NeuroNames:176] -synonym: "FC" RELATED ABBREVIATION [NeuroNames:176] +synonym: "FC" RELATED OMO:0003000 [NeuroNames:176] synonym: "gyrus fasciolaris" RELATED [BTO:0002497, NeuroNames:176] synonym: "gyrus retrosplenialis hippocampi" RELATED LATIN [NeuroNames:176] synonym: "retrosplenial gyrus of hippocampus" EXACT [FMA:61921] @@ -55228,7 +55228,7 @@ property_value: external_definition "Multi-cell component structure of the centr [Term] id: UBERON:0002607 name: superior rostral sulcus -synonym: "SROS" BROAD ABBREVIATION [BIRNLEX:1143, NIFSTD:NeuroNames_abbrevSource] +synonym: "SROS" BROAD OMO:0003000 [BIRNLEX:1143, NIFSTD:NeuroNames_abbrevSource] synonym: "sulcus rostralis superior" EXACT [BIRNLEX:1143] xref: BAMS:sros xref: BIRNLEX:1143 @@ -55249,7 +55249,7 @@ synonym: "nucleus lateralis intermedius mediodorsalis situs dorsalis" EXACT [BIR synonym: "nucleus ventralis lateralis, pars caudalis" EXACT [BIRNLEX:1144] synonym: "ventral lateral nucleus, caudal part" EXACT [FMA:62194] synonym: "ventral lateral thalamic nucleus, caudal part" EXACT [FMA:62194] -synonym: "VLC" BROAD ABBREVIATION [BIRNLEX:1144, NIFSTD:NeuroNames_abbrevSource] +synonym: "VLC" BROAD OMO:0003000 [BIRNLEX:1144, NIFSTD:NeuroNames_abbrevSource] xref: BAMS:VLC xref: BIRNLEX:1144 xref: DHBA:10422 @@ -55263,7 +55263,7 @@ relationship: part_of UBERON:0001925 ! ventral lateral nucleus of thalamus id: UBERON:0002609 name: spinothalamic tract of midbrain synonym: "spinothalamic tract of the midbrain" RELATED [NeuroNames:535] -synonym: "STMB" BROAD ABBREVIATION [BIRNLEX:1150, NIFSTD:NeuroNames_abbrevSource] +synonym: "STMB" BROAD OMO:0003000 [BIRNLEX:1150, NIFSTD:NeuroNames_abbrevSource] synonym: "tractus spinothalamicus (mesencephali)" RELATED LATIN [NeuroNames:535] xref: BAMS:stmb xref: BIRNLEX:1150 @@ -55325,7 +55325,7 @@ consider: NCIT:C33172 id: UBERON:0002612 name: transverse orbital sulcus synonym: "sulcus orbitalis transversus" EXACT [BIRNLEX:1155] -synonym: "TOS" BROAD ABBREVIATION [BIRNLEX:1155, NIFSTD:NeuroNames_abbrevSource] +synonym: "TOS" BROAD OMO:0003000 [BIRNLEX:1155, NIFSTD:NeuroNames_abbrevSource] xref: BAMS:tos xref: BIRNLEX:1155 xref: DHBA:13223 @@ -55385,7 +55385,7 @@ synonym: "ventral medial nucleus of the thalamus" RELATED [BAMS:VM] synonym: "ventromedial nucleus of thalamus" RELATED [BAMS:VM] synonym: "ventromedial nucleus of the thalamus" RELATED [BAMS:VM] synonym: "ventromedial thalamic nucleus" RELATED [BAMS:VM] -synonym: "VLM" BROAD ABBREVIATION [BIRNLEX:1159, NIFSTD:NeuroNames_abbrevSource] +synonym: "VLM" BROAD OMO:0003000 [BIRNLEX:1159, NIFSTD:NeuroNames_abbrevSource] synonym: "vMp (Macchi)" EXACT LATIN [FMA:62195, FMA:TA] xref: BAMS:VLM xref: BAMS:VM @@ -55412,7 +55412,7 @@ synonym: "decussation of forel" EXACT [] synonym: "inferior decussation (Forel's decussation)" RELATED [NeuroNames:524] synonym: "ventral tegmental decussation (Forel)" RELATED [NeuroNames:524] synonym: "ventral tegmental decussation of forel" EXACT [] -synonym: "VTGX" BROAD ABBREVIATION [BIRNLEX:1163, NIFSTD:NeuroNames_abbrevSource] +synonym: "VTGX" BROAD OMO:0003000 [BIRNLEX:1163, NIFSTD:NeuroNames_abbrevSource] xref: BAMS:vtd xref: BAMS:vtgx xref: BIRNLEX:1163 @@ -55461,7 +55461,7 @@ synonym: "posterodorsal part of ventral lateral posterior nucleus (jones)" EXACT synonym: "ventral lateral nucleus (pars postrema)" EXACT [FMA:62196] synonym: "ventrolateral posterior thalamic nucleus" RELATED [BAMS:VLP] synonym: "ventrolateral preoptic nucleus" RELATED [BAMS:VLP] -synonym: "VLP" BROAD ABBREVIATION [BIRNLEX:1170, NIFSTD:NeuroNames_abbrevSource] +synonym: "VLP" BROAD OMO:0003000 [BIRNLEX:1170, NIFSTD:NeuroNames_abbrevSource] synonym: "vLps" EXACT LATIN [FMA:62196, FMA:TA] xref: BAMS:VLP xref: BIRNLEX:1170 @@ -55478,7 +55478,7 @@ relationship: part_of UBERON:0001925 ! ventral lateral nucleus of thalamus id: UBERON:0002618 name: root of trochlear nerve alt_id: UBERON:0002674 -synonym: "4nf" BROAD ABBREVIATION [BIRNLEX:1172, NIFSTD:NeuroNames_abbrevSource] +synonym: "4nf" BROAD OMO:0003000 [BIRNLEX:1172, NIFSTD:NeuroNames_abbrevSource] synonym: "central part of trochlear nerve" EXACT [FMA:71116] synonym: "fibrae nervi trochlearis" RELATED LATIN [NeuroNames:486] synonym: "trochlear nerve fibers" EXACT [FMA:71116] @@ -55523,7 +55523,7 @@ id: UBERON:0002620 name: tuber cinereum def: "Part of hypothalamus consisting of hollow eminence of gray matter situated between the mammilary bodies and the optic chiasm visible on the basal surface of the brain (adapted from Wikipedia)." [BIRNLEX:1189, Wikipedia:Tuber_cinereum] subset: uberon_slim -synonym: "TBCN" BROAD ABBREVIATION [BIRNLEX:1189, NIFSTD:NeuroNames_abbrevSource] +synonym: "TBCN" BROAD OMO:0003000 [BIRNLEX:1189, NIFSTD:NeuroNames_abbrevSource] synonym: "tuber cinereum area" RELATED [NeuroNames:1782] synonym: "tuberal area" RELATED [NeuroNames:1782] synonym: "tuberal area of hypothalamus" RELATED [NeuroNames:1782] @@ -55577,7 +55577,7 @@ synonym: "nucleus preopticus periventricularis" EXACT LATIN [FMA:62324, FMA:TA] synonym: "periventricular hypothalamic nucleus, preoptic part" RELATED [BAMS:PVpo] synonym: "periventricular nucleus, anterior portion" RELATED [NeuroNames:379] synonym: "periventricular preoptic nucleus" EXACT [FMA:62324] -synonym: "POP" BROAD ABBREVIATION [BIRNLEX:1201, NIFSTD:NeuroNames_abbrevSource] +synonym: "POP" BROAD OMO:0003000 [BIRNLEX:1201, NIFSTD:NeuroNames_abbrevSource] synonym: "preoptic periventricular hypothalamic nucleus" EXACT [FMA:62324] xref: BAMS:POP xref: BAMS:PVpo @@ -55604,7 +55604,7 @@ subset: uberon_slim synonym: "cerebal peduncle" RELATED [NeuroNames:487] synonym: "cerebral peduncle" EXACT [FMA:62394] synonym: "cerebral peduncle (archaic)" RELATED [NeuroNames:487] -synonym: "CP" BROAD ABBREVIATION [BIRNLEX:1202, NIFSTD:NeuroNames_abbrevSource] +synonym: "CP" BROAD OMO:0003000 [BIRNLEX:1202, NIFSTD:NeuroNames_abbrevSource] synonym: "peduncle of midbrain" EXACT [FMA:62394] synonym: "pedunculi cerebri" RELATED LATIN [NeuroNames:487] synonym: "pedunculus cerebralis" RELATED LATIN [NeuroNames:487] @@ -55658,7 +55658,7 @@ name: median preoptic nucleus def: "The median preoptic nucleus is located along the midline in a position significantly dorsal to the other 3 preoptic nuclei, at least in the macaca fascicularis brain. It wraps around the top (dorsal), front, and bottom (ventral) surfaces of the anterior commissure. The median preoptic nucleus generates thirst. Drinking decreases noradrenaline release in the median preoptic nucleus." [Wikipedia:Preoptic_area#Median_preoptic_nucleus] subset: uberon_slim synonym: "median preoptic nucleus (Loo)" RELATED [NeuroNames:378] -synonym: "MnPO" BROAD ABBREVIATION [BIRNLEX:1208, NIFSTD:NeuroNames_abbrevSource] +synonym: "MnPO" BROAD OMO:0003000 [BIRNLEX:1208, NIFSTD:NeuroNames_abbrevSource] synonym: "nucleus praeopticus medianus" RELATED LATIN [NeuroNames:378] synonym: "nucleus preopticus medianus" RELATED LATIN [NeuroNames:378] synonym: "periventricular nucleus, preventricular portion" RELATED [NeuroNames:378] @@ -55789,7 +55789,7 @@ synonym: "base of cerebral peduncle" RELATED [BTO:0004677] synonym: "basis cerebri (Oertel)" RELATED LATIN [NeuroNames:539] synonym: "basis pedunculi (Oertel)" RELATED LATIN [NeuroNames:539] synonym: "basis pedunculi cerebri (Willis)" RELATED LATIN [NeuroNames:539] -synonym: "CCR" BROAD ABBREVIATION [BIRNLEX:1218, NIFSTD:NeuroNames_abbrevSource] +synonym: "CCR" BROAD OMO:0003000 [BIRNLEX:1218, NIFSTD:NeuroNames_abbrevSource] synonym: "cerebral peduncle (clinical definition)" EXACT [FMA:72464] synonym: "cerebral peduncle, basal part" RELATED [NeuroNames:539] synonym: "crura cerebri" EXACT [MA:0001056] @@ -55827,7 +55827,7 @@ synonym: "medial mammillary nucleus, medial part" EXACT [FMA:62345] synonym: "medial mammillary nucleus, median part" EXACT [FMA:62345] synonym: "medial part of the medial mammillary nucleus" RELATED [NeuroNames:415] synonym: "medial subdivision of medial mammillary nucleus" EXACT [FMA:62345] -synonym: "MML" BROAD ABBREVIATION [BIRNLEX:1220, NIFSTD:NeuroNames_abbrevSource] +synonym: "MML" BROAD OMO:0003000 [BIRNLEX:1220, NIFSTD:NeuroNames_abbrevSource] synonym: "nucleus corporis mamillaris medialis, pars medialis" RELATED LATIN [NeuroNames:415] synonym: "nucleus medialis corpus mamillaris (Shantha)" RELATED LATIN [NeuroNames:415] xref: BAMS:MMM @@ -55910,7 +55910,7 @@ name: anterior nucleus of hypothalamus def: "A loose heterogeneous collection of cells in the anterior hypothalamus, continuous rostrally with the medial and lateral preoptic areas and caudally with the tuber cinereum." [MESH:A08.186.211.730.317.357.342.063, MP:0008848] subset: pheno_slim subset: uberon_slim -synonym: "AH" BROAD ABBREVIATION [BIRNLEX:1226, NIFSTD:NeuroNames_abbrevSource] +synonym: "AH" BROAD OMO:0003000 [BIRNLEX:1226, NIFSTD:NeuroNames_abbrevSource] synonym: "anterior hypothalamic area" RELATED [FMA:62319] synonym: "anterior hypothalamic area anterior part" RELATED [BAMS:AHA] synonym: "anterior hypothalamic area, anterior part" RELATED [BAMS:AHA] @@ -55963,7 +55963,7 @@ consider: FMA:62399 id: UBERON:0002636 name: lateral pulvinar nucleus synonym: "lateral pulvinar nucleus of thalamus" EXACT [FMA:62181] -synonym: "LPul" BROAD ABBREVIATION [BIRNLEX:1228, NIFSTD:NeuroNames_abbrevSource] +synonym: "LPul" BROAD OMO:0003000 [BIRNLEX:1228, NIFSTD:NeuroNames_abbrevSource] synonym: "nucleus pulvinaris lateralis" EXACT [BIRNLEX:1228] synonym: "nucleus pulvinaris lateralis (Hassler)" EXACT [BIRNLEX:1228] synonym: "nucleus pulvinaris lateralis thalami" EXACT [BIRNLEX:1228] @@ -55989,7 +55989,7 @@ synonym: "nucleus ventralis anterior" EXACT [BIRNLEX:1232] synonym: "nucleus ventralis anterior thalami" EXACT [BIRNLEX:1232] synonym: "nucleus ventralis anterior thalami" RELATED LATIN [Wikipedia:Ventral_anterior_nucleus] synonym: "nucleus ventralis thalami anterior" EXACT [BIRNLEX:1232] -synonym: "VA" BROAD ABBREVIATION [BIRNLEX:1232, NIFSTD:NeuroNames_abbrevSource] +synonym: "VA" BROAD OMO:0003000 [BIRNLEX:1232, NIFSTD:NeuroNames_abbrevSource] synonym: "ventral anterior nucleus" EXACT [FMA:62184] synonym: "ventral anterior nucleus of thalamus" EXACT [FMA:62184] synonym: "ventral anterior nucleus of the thalamus" RELATED [BAMS:VA] @@ -56018,7 +56018,7 @@ property_value: depicted_by "http://upload.wikimedia.org/wikipedia/commons/1/1b/ [Term] id: UBERON:0002638 name: medial pulvinar nucleus -synonym: "MPul" BROAD ABBREVIATION [BIRNLEX:1233, NIFSTD:NeuroNames_abbrevSource] +synonym: "MPul" BROAD OMO:0003000 [BIRNLEX:1233, NIFSTD:NeuroNames_abbrevSource] synonym: "nucleus pulvinaris medialis" EXACT [BIRNLEX:1233] synonym: "nucleus pulvinaris medialis thalami" EXACT [BIRNLEX:1233] synonym: "nucleus pulvinaris thalami, pars medialis" EXACT [BIRNLEX:1233] @@ -56040,7 +56040,7 @@ def: "Part of the reticular formation located in the midbrain tegmentum." [BIRNL synonym: "formatio reticularis mesencephali" RELATED LATIN [NeuroNames:501] synonym: "formatio reticularis tegmentalis" RELATED LATIN [NeuroNames:501] synonym: "formatio reticularis tegmenti mesencephali" RELATED LATIN [NeuroNames:501] -synonym: "MBRF" BROAD ABBREVIATION [BIRNLEX:1235, NIFSTD:NeuroNames_abbrevSource] +synonym: "MBRF" BROAD OMO:0003000 [BIRNLEX:1235, NIFSTD:NeuroNames_abbrevSource] synonym: "reticular formation of midbrain" EXACT [FMA:62406] synonym: "substantia reticularis mesencephali" RELATED LATIN [NeuroNames:501] synonym: "tegmental reticular formation" EXACT [FMA:62406] @@ -56087,7 +56087,7 @@ synonym: "anterior pulvinar nucleus" EXACT [FMA:62180] synonym: "nucleus pulvinaris anterior" EXACT LATIN [FMA:62180, FMA:TA] synonym: "nucleus pulvinaris oralis" EXACT [BIRNLEX:1239] synonym: "nucleus pulvinaris oralis thalami" EXACT [BIRNLEX:1239] -synonym: "OPul" BROAD ABBREVIATION [BIRNLEX:1239, NIFSTD:NeuroNames_abbrevSource] +synonym: "OPul" BROAD OMO:0003000 [BIRNLEX:1239, NIFSTD:NeuroNames_abbrevSource] synonym: "oral nuclear group of pulvinar" EXACT [FMA:62180] synonym: "oral part of pulvinar" EXACT [FMA:62180] synonym: "oral portion of pulvinar" EXACT [FMA:62180] @@ -56161,7 +56161,7 @@ is_a: UBERON:0007193 ! orbital gyrus id: UBERON:0002645 name: densocellular part of medial dorsal nucleus synonym: "densocellular part of the medial dorsal nucleus" RELATED [NeuroNames:316] -synonym: "MDD" BROAD ABBREVIATION [BIRNLEX:1255, NIFSTD:NeuroNames_abbrevSource] +synonym: "MDD" BROAD OMO:0003000 [BIRNLEX:1255, NIFSTD:NeuroNames_abbrevSource] synonym: "nucleus medialis dorsalis paralamellaris (Hassler)" EXACT [BIRNLEX:1255] synonym: "nucleus medialis dorsalis, pars densocellularis" EXACT [BIRNLEX:1255] xref: BIRNLEX:1255 @@ -56203,7 +56203,7 @@ synonym: "magnocellular nucleus of medial dorsal nucleus of thalamus" EXACT [FMA synonym: "magnocellular part of dorsomedial nucleus" EXACT [FMA:62161] synonym: "magnocellular part of mediodorsal nucleus" EXACT [BIRNLEX:1262] synonym: "magnocellular part of the medial dorsal nucleus" RELATED [NeuroNames:314] -synonym: "MDM" BROAD ABBREVIATION [BIRNLEX:1262, NIFSTD:NeuroNames_abbrevSource] +synonym: "MDM" BROAD OMO:0003000 [BIRNLEX:1262, NIFSTD:NeuroNames_abbrevSource] synonym: "MDmc" EXACT [] {comment="PMID:23950738"} synonym: "mediodorsal nucleus of the thalamus, medial part" EXACT [MBA:636] synonym: "nucleus medialis dorsalis, pars magnocellularis" EXACT [BIRNLEX:1262] @@ -56225,7 +56225,7 @@ property_value: curator_notes "See https://github.com/obophenotype/uberon/issues [Term] id: UBERON:0002648 name: anterior median eminence -synonym: "AME" BROAD ABBREVIATION [BIRNLEX:1264, NIFSTD:NeuroNames_abbrevSource] +synonym: "AME" BROAD OMO:0003000 [BIRNLEX:1264, NIFSTD:NeuroNames_abbrevSource] synonym: "eminentia mediana anterior" RELATED LATIN [NeuroNames:403] xref: BAMS:AME xref: BIRNLEX:1264 @@ -56269,7 +56269,7 @@ property_value: editor_note "resolve distinction between Lissauer's tract and th id: UBERON:0002650 name: paralaminar part of medial dorsal nucleus synonym: "dorsomedial thalamic nucleus, paralaminar part" EXACT [FMA:62160] -synonym: "MDPL" BROAD ABBREVIATION [BIRNLEX:1276, NIFSTD:NeuroNames_abbrevSource] +synonym: "MDPL" BROAD OMO:0003000 [BIRNLEX:1276, NIFSTD:NeuroNames_abbrevSource] synonym: "mediodorsal thalamic nucleus paralaminar part" RELATED [BAMS:MDPL] synonym: "mediodorsal thalamic nucleus, paralaminar part" EXACT [BIRNLEX:1276] synonym: "nucleus medialis dorsalis caudalis (hassler)" EXACT [BIRNLEX:1276] @@ -56324,7 +56324,7 @@ property_value: depicted_by "http://upload.wikimedia.org/wikipedia/commons/b/b7/ id: UBERON:0002652 name: posterior median eminence synonym: "eminentia mediana posterior" RELATED LATIN [NeuroNames:404] -synonym: "PME" BROAD ABBREVIATION [BIRNLEX:1280, NIFSTD:NeuroNames_abbrevSource] +synonym: "PME" BROAD OMO:0003000 [BIRNLEX:1280, NIFSTD:NeuroNames_abbrevSource] xref: BAMS:PME xref: BIRNLEX:1280 xref: DHBA:12860 @@ -56363,7 +56363,7 @@ name: parvocellular part of medial dorsal nucleus synonym: "dorsomedial thalamic nucleus, parvicellular part" EXACT [FMA:62162] synonym: "lateral mediodorsal nucleus" EXACT [FMA:62162] synonym: "lateral nucleus of medial dorsal nucleus of thalamus" EXACT [FMA:62162] -synonym: "MDPC" BROAD ABBREVIATION [BIRNLEX:1283, NIFSTD:NeuroNames_abbrevSource] +synonym: "MDPC" BROAD OMO:0003000 [BIRNLEX:1283, NIFSTD:NeuroNames_abbrevSource] synonym: "mediodorsal thalamic nucleus, pars fasciculosa" EXACT [BIRNLEX:1283] synonym: "nucleus medialis dorsalis fasciculosis (hassler)" EXACT [BIRNLEX:1283] synonym: "nucleus medialis dorsalis nucleus fasciculosis (hassler)" EXACT [BIRNLEX:1283] @@ -56453,7 +56453,7 @@ synonym: "gyrus parahippocampalis, pars posterior" RELATED LATIN [NeuroNames:169 synonym: "parahippocampal gyrus (amaral)" EXACT [] synonym: "parahippocampal gyrus (insausti)" EXACT [BIRNLEX:1295] synonym: "parahippocampal gyrus, posterior division" RELATED [http://orcid.org/0000-0001-6755-0259] -synonym: "pHp" BROAD ABBREVIATION [FMA:67966, FMA:CMA] +synonym: "pHp" BROAD OMO:0003000 [FMA:67966, FMA:CMA] xref: BAMS:PPHG xref: BIRNLEX:1295 xref: DHBA:12164 @@ -56472,7 +56472,7 @@ def: "Part of medial lemniscus located within the midbrain." [BIRNLEX:1296] synonym: "lemniscus medialis (mesencephali)" RELATED LATIN [NeuroNames:533] synonym: "medial lemniscus of the midbrain" RELATED [NeuroNames:533] synonym: "midbrain medial lemniscus" EXACT [OBOL:automatic] -synonym: "MLMB" BROAD ABBREVIATION [BIRNLEX:1296, NIFSTD:NeuroNames_abbrevSource] +synonym: "MLMB" BROAD OMO:0003000 [BIRNLEX:1296, NIFSTD:NeuroNames_abbrevSource] xref: BAMS:mlmb xref: BIRNLEX:1296 xref: FMA:72461 @@ -56516,7 +56516,7 @@ def: "A medial longitudinal fasciculus that is part of a midbrain [Automatically synonym: "fasciculus longitudinalis medialis (mesencephali)" RELATED LATIN [NeuroNames:526] synonym: "medial longitudinal fasciculus of the midbrain" RELATED [NeuroNames:526] synonym: "midbrain medial longitudinal fasciculus" EXACT [OBOL:automatic] -synonym: "MLFMB" BROAD ABBREVIATION [BIRNLEX:1302, NIFSTD:NeuroNames_abbrevSource] +synonym: "MLFMB" BROAD OMO:0003000 [BIRNLEX:1302, NIFSTD:NeuroNames_abbrevSource] xref: BAMS:mlfmb xref: BIRNLEX:1302 xref: FMA:72454 @@ -56556,7 +56556,7 @@ property_value: depicted_by "http://upload.wikimedia.org/wikipedia/commons/5/50/ [Term] id: UBERON:0002662 name: medial pes lemniscus -synonym: "MPL" BROAD ABBREVIATION [BIRNLEX:1310, NIFSTD:NeuroNames_abbrevSource] +synonym: "MPL" BROAD OMO:0003000 [BIRNLEX:1310, NIFSTD:NeuroNames_abbrevSource] synonym: "pes lemniscus medialis" RELATED LATIN [NeuroNames:532] synonym: "superficial pes lemniscus" EXACT [FMA:72460] xref: BAMS:mpl @@ -56607,7 +56607,7 @@ synonym: "lateral part of the medial mammillary nucleus" RELATED [NeuroNames:416 synonym: "lateral subdivision of medial mammillary nucleus" EXACT [FMA:62346] synonym: "medial mammillary nucleus lateral part" RELATED [BAMS:ML] synonym: "medial mammillary nucleus, lateral part" EXACT [FMA:62346] -synonym: "MML" BROAD ABBREVIATION [BIRNLEX:1314, NIFSTD:NeuroNames_abbrevSource] +synonym: "MML" BROAD OMO:0003000 [BIRNLEX:1314, NIFSTD:NeuroNames_abbrevSource] synonym: "nucleus corporis mamillaris medialis, pars lateralis" RELATED LATIN [NeuroNames:416] synonym: "nucleus intercalatus corporis mammillaris" RELATED LATIN [NeuroNames:416] synonym: "nucleus intermedius corpus mamillaris" RELATED LATIN [NeuroNames:416] @@ -56646,7 +56646,7 @@ relationship: part_of UBERON:0002600 {source="FMA"} ! limbic lobe [Term] id: UBERON:0002666 name: mesencephalic tract of trigeminal nerve -synonym: "me5" BROAD ABBREVIATION [BIRNLEX:1318, NIFSTD:NeuroNames_abbrevSource] +synonym: "me5" BROAD OMO:0003000 [BIRNLEX:1318, NIFSTD:NeuroNames_abbrevSource] synonym: "mesencephalic root of v" EXACT [] synonym: "mesencephalic tract of the trigeminal nerve" RELATED [NeuroNames:596] synonym: "mesencephalic trigeminal tract" EXACT [FMA:72489] @@ -56698,7 +56698,7 @@ relationship: mutually_spatially_disjoint_with UBERON:0007630 {source="ABA"} ! s id: UBERON:0002668 name: oculomotor nerve root def: "Initial segment of the occulomotor nerve as it leaves the midbrain." [BIRNLEX:1335] -synonym: "3nf" BROAD ABBREVIATION [BIRNLEX:1323, NIFSTD:NeuroNames_abbrevSource] +synonym: "3nf" BROAD OMO:0003000 [BIRNLEX:1323, NIFSTD:NeuroNames_abbrevSource] synonym: "central part of oculomotor nerve" EXACT [FMA:72457] synonym: "fibrae nervi oculomotorii" RELATED LATIN [NeuroNames:529] synonym: "oculomotor nerve fibers" EXACT [FMA:72457] @@ -56776,7 +56776,7 @@ synonym: "fasciculus pallido-tegmentalis" RELATED LATIN [NeuroNames:530] synonym: "fibrae pallidoolivares" RELATED LATIN [NeuroNames:530] synonym: "pallidotegmental fascicle" RELATED [NeuroNames:530] synonym: "pallidotegmental tract" EXACT [FMA:72458] -synonym: "PTF" BROAD ABBREVIATION [BIRNLEX:1331, NIFSTD:NeuroNames_abbrevSource] +synonym: "PTF" BROAD OMO:0003000 [BIRNLEX:1331, NIFSTD:NeuroNames_abbrevSource] xref: BAMS:ptf xref: BIRNLEX:1331 xref: DHBA:12078 @@ -56870,7 +56870,7 @@ synonym: "ventral supraoptic commissure (of Meynert)" EXACT [BIRNLEX:1347] synonym: "ventral supraoptic decussation" EXACT [BIRNLEX:1347] synonym: "ventral supraoptic decussation of Gudden" RELATED [FMA:62052] synonym: "von Gudden's commissure" EXACT [FMA:62052] -synonym: "VSOX" BROAD ABBREVIATION [BIRNLEX:1347, NIFSTD:NeuroNames_abbrevSource] +synonym: "VSOX" BROAD OMO:0003000 [BIRNLEX:1347, NIFSTD:NeuroNames_abbrevSource] synonym: "VSOX" EXACT [BIRNLEX:1347] xref: BAMS:supv xref: BAMS:vsox @@ -56910,7 +56910,7 @@ consider: SCTID:119241003 [Term] id: UBERON:0002679 name: anterodorsal nucleus of thalamus -synonym: "AD" BROAD ABBREVIATION [BIRNLEX:1358, NIFSTD:NeuroNames_abbrevSource] +synonym: "AD" BROAD OMO:0003000 [BIRNLEX:1358, NIFSTD:NeuroNames_abbrevSource] synonym: "anterior dorsal thalamic nucleus" EXACT [EMAPA:35129] synonym: "anterodorsal nucleus" EXACT [FMA:62141] synonym: "anterodorsal nucleus of the thalamus" EXACT [BIRNLEX:1358] @@ -56956,7 +56956,7 @@ consider: FMA:67942 [Term] id: UBERON:0002681 name: anteromedial nucleus of thalamus -synonym: "AM" BROAD ABBREVIATION [BIRNLEX:1365, NIFSTD:NeuroNames_abbrevSource] +synonym: "AM" BROAD OMO:0003000 [BIRNLEX:1365, NIFSTD:NeuroNames_abbrevSource] synonym: "anteromedial nucleus" EXACT [FMA:62142] synonym: "anteromedial nucleus of the thalamus" EXACT [BIRNLEX:1365] synonym: "anteromedial thalamic nucleus" EXACT [FMA:62142] @@ -57048,7 +57048,7 @@ synonym: "fissura rhinalis" RELATED LATIN [Wikipedia:Rhinal_sulcus] synonym: "rhinal fissuer (Turner, Rezius)" EXACT [BIRNLEX:1368] synonym: "rhinal fissure" EXACT [FMA:83746] synonym: "rhinal fissure (Turner, Rezius)" RELATED [NeuroNames:41] -synonym: "RHS" BROAD ABBREVIATION [BIRNLEX:1368, NIFSTD:NeuroNames_abbrevSource] +synonym: "RHS" BROAD OMO:0003000 [BIRNLEX:1368, NIFSTD:NeuroNames_abbrevSource] synonym: "sulcus rhinalis" EXACT [BIRNLEX:1368] synonym: "sulcus rhinalis" RELATED LATIN [Wikipedia:Rhinal_sulcus] xref: BAMS:rf @@ -57105,7 +57105,7 @@ synonym: "anteroventral nucleus" EXACT [FMA:62143] synonym: "anteroventral nucleus of thalamus" EXACT [FMA:62143] synonym: "anteroventral nucleus of the thalamus" EXACT [BIRNLEX:1372] synonym: "anteroventral thalamic nucleus" EXACT [FMA:62143] -synonym: "AV" BROAD ABBREVIATION [BIRNLEX:1372, NIFSTD:NeuroNames_abbrevSource] +synonym: "AV" BROAD OMO:0003000 [BIRNLEX:1372, NIFSTD:NeuroNames_abbrevSource] synonym: "nucleus anterior principalis (Hassler)" RELATED LATIN [NeuroNames:305] synonym: "nucleus anterior thalami ventralis" EXACT [BIRNLEX:1372] synonym: "nucleus anterior ventralis" EXACT [BIRNLEX:1372] @@ -57173,7 +57173,7 @@ synonym: "nucleus ventralis oralis, pars posterior (dewulf)" EXACT [BIRNLEX:1379 synonym: "nucleus ventro-oralis internus (Hassler)" RELATED LATIN [NeuroNames:342] synonym: "nucleus ventrooralis internus (hassler)" EXACT [BIRNLEX:1379] synonym: "nucleus ventrooralis internus, superior part" EXACT [BIRNLEX:1379] -synonym: "X" BROAD ABBREVIATION [BIRNLEX:1379, NIFSTD:NeuroNames_abbrevSource] +synonym: "X" BROAD OMO:0003000 [BIRNLEX:1379, NIFSTD:NeuroNames_abbrevSource] xref: BIRNLEX:1379 xref: DHBA:12653 xref: FMA:62198 @@ -57189,7 +57189,7 @@ def: "Component of the parietal lobe. The first coronal slice between the superi subset: pheno_slim subset: uberon_slim synonym: "anterior part of inferior parietal lobule" EXACT [FMA:61897] -synonym: "BA40" RELATED ABBREVIATION [] +synonym: "BA40" RELATED OMO:0003000 [] synonym: "Brodmann area 40" RELATED [Wikipedia:Supramarginal_gyrus] synonym: "gyrus supramarginalis" RELATED LATIN [NeuroNames:108] synonym: "inferior parietal lobule (krieg)" EXACT [] @@ -57217,9 +57217,9 @@ synonym: "organum vasculosum" RELATED [NeuroNames:383] synonym: "organum vasculosum lamina terminalis" EXACT LATIN [NLXANAT:100313] synonym: "organum vasculosum laminae terminalis" EXACT LATIN [FMA:62315, FMA:TA] synonym: "organum vasculosum of lamina terminalis" RELATED LATIN [NeuroNames:383] -synonym: "OVLT" EXACT ABBREVIATION [BIRNLEX:1400] +synonym: "OVLT" EXACT OMO:0003000 [BIRNLEX:1400] synonym: "prechiasmatic gland" EXACT [BIRNLEX:1400] -synonym: "SoC" BROAD ABBREVIATION [BIRNLEX:1400, NIFSTD:NeuroNames_abbrevSource] +synonym: "SoC" BROAD OMO:0003000 [BIRNLEX:1400, NIFSTD:NeuroNames_abbrevSource] synonym: "vascular organ of lamina terminalis" EXACT [FMA:62315] synonym: "vascular organ of the lamina terminalis" RELATED [NeuroNames:383] xref: BAMS:OV @@ -57252,7 +57252,7 @@ id: UBERON:0002690 name: anteroventral periventricular nucleus synonym: "anterior ventral periventricular nucleus of hypothalamus" RELATED [BAMS:AVPe] synonym: "anteroventral periventricular nucleus of the hypothalamus" RELATED [BAMS:AVPV] -synonym: "AVPe" BROAD ABBREVIATION [BIRNLEX:1401, NIFSTD:NeuroNames_abbrevSource] +synonym: "AVPe" BROAD OMO:0003000 [BIRNLEX:1401, NIFSTD:NeuroNames_abbrevSource] synonym: "nucleus periventricularis anteroventralis" RELATED LATIN [NeuroNames:382] synonym: "ventral periventricular hypothalamic nucleus" RELATED [NeuroNames:382] xref: BAMS:AVPe @@ -57291,7 +57291,7 @@ synonym: "ventral tegmental nucleus (Rioch)" RELATED [NeuroNames:521] synonym: "ventral tegmental nucleus (tsai)" EXACT [FMA:72438] synonym: "ventral tegmental nucleus of tsai" EXACT [FMA:72438] synonym: "ventromedial mesencephalic tegmentum" RELATED [BIRNLEX:1415] -synonym: "VTA" BROAD ABBREVIATION [BIRNLEX:1415, NIFSTD:NeuroNames_abbrevSource] +synonym: "VTA" BROAD OMO:0003000 [BIRNLEX:1415, NIFSTD:NeuroNames_abbrevSource] xref: BAMS:VTA xref: BIRNLEX:1415 xref: BM:MB-VTA @@ -57353,7 +57353,7 @@ synonym: "inferior temporal sulcus-2" EXACT [FMA:74518] synonym: "lateral occipito -temporal sulcus" RELATED [BAMS:lots] synonym: "lateral occipitotemporal sulcus" EXACT [BIRNLEX:1422] synonym: "occipito-temporal sulcus" EXACT [FMA:74518] -synonym: "OTS" BROAD ABBREVIATION [BIRNLEX:1422, NIFSTD:NeuroNames_abbrevSource] +synonym: "OTS" BROAD OMO:0003000 [BIRNLEX:1422, NIFSTD:NeuroNames_abbrevSource] synonym: "sulcus occipitotemporalis" RELATED LATIN [NeuroNames:55] synonym: "sulcus temporalis inferior (Roberts)" RELATED LATIN [NeuroNames:55] synonym: "third temporal sulcus" EXACT [FMA:74518] @@ -57371,7 +57371,7 @@ is_a: UBERON:0008334 {source="FMA"} ! subarachnoid sulcus [Term] id: UBERON:0002694 name: anterior hypothalamic commissure -synonym: "AHC" BROAD ABBREVIATION [BIRNLEX:1424, NIFSTD:NeuroNames_abbrevSource] +synonym: "AHC" BROAD OMO:0003000 [BIRNLEX:1424, NIFSTD:NeuroNames_abbrevSource] synonym: "anterior hypothalamic commissure (Ganser)" EXACT [FMA:62053] synonym: "anterior hypothalamic decussation of Ganser" EXACT [FMA:62053] synonym: "commissura hypothalamica anterior" RELATED LATIN [NeuroNames:390] @@ -57395,7 +57395,7 @@ synonym: "fissura parietooccipitalis" RELATED LATIN [Wikipedia:Parieto-occipital synonym: "parieto-occipital fissure" EXACT [FMA:83754] synonym: "parieto-occipital incisure" EXACT [FMA:83754] synonym: "parietooccipital sulcus" EXACT [FMA:83754] -synonym: "POS" BROAD ABBREVIATION [BIRNLEX:1428, NIFSTD:NeuroNames_abbrevSource] +synonym: "POS" BROAD OMO:0003000 [BIRNLEX:1428, NIFSTD:NeuroNames_abbrevSource] synonym: "posterior orbital sulcus" RELATED [BAMS:pos] synonym: "sulcus parieto-occipitalis" EXACT [BIRNLEX:1428] synonym: "sulcus parieto-occipitalis medialis" EXACT [BIRNLEX:1428] @@ -57424,7 +57424,7 @@ property_value: external_ontology_notes "two classes in ncit (in general ncit di id: UBERON:0002696 name: cuneiform nucleus synonym: "area parabigeminalis (Mai)" RELATED LATIN [NeuroNames:502] -synonym: "CnF" BROAD ABBREVIATION [BIRNLEX:1430, NIFSTD:NeuroNames_abbrevSource] +synonym: "CnF" BROAD OMO:0003000 [BIRNLEX:1430, NIFSTD:NeuroNames_abbrevSource] synonym: "cuneiform nucleus (Castaldi)" RELATED [NeuroNames:502] synonym: "cunieform nucleus" EXACT DUBIOUS [FMA:231327] synonym: "nucleus cuneiformis" RELATED LATIN [NeuroNames:502] @@ -57466,7 +57466,7 @@ synonym: "dorsal supraoptic commissure (of ganser)" EXACT [] synonym: "dorsal supraoptic decussation (of ganser)" EXACT [BIRNLEX:1433] synonym: "dorsal supraoptic decussation (of Meynert)" EXACT [BIRNLEX:1433] synonym: "dorsal supraoptic decussation of Meynert" EXACT [] -synonym: "DSOX" BROAD ABBREVIATION [BIRNLEX:1433, NIFSTD:NeuroNames_abbrevSource] +synonym: "DSOX" BROAD OMO:0003000 [BIRNLEX:1433, NIFSTD:NeuroNames_abbrevSource] synonym: "ganser's commissure" EXACT [FMA:62051] synonym: "Meynert's commissure" EXACT [FMA:62051] synonym: "supraoptic commissure of Meynert" EXACT [] @@ -57490,7 +57490,7 @@ synonym: "incisura parieto-occipitalis" EXACT [BIRNLEX:1436] synonym: "incisura praeoccipitalis" EXACT [BIRNLEX:1436] synonym: "incisura preoccipitalis" EXACT [BIRNLEX:1436] synonym: "occipital notch" EXACT [FMA:83739] -synonym: "PON" BROAD ABBREVIATION [BIRNLEX:1436, NIFSTD:NeuroNames_abbrevSource] +synonym: "PON" BROAD OMO:0003000 [BIRNLEX:1436, NIFSTD:NeuroNames_abbrevSource] synonym: "preoccipital incisura" EXACT [FMA:83739] synonym: "preoccipital incisure" EXACT [FMA:83739] xref: BAMS:pon @@ -57508,7 +57508,7 @@ relationship: part_of UBERON:0002021 ! occipital lobe [Term] id: UBERON:0002699 name: supraopticohypophysial tract -synonym: "SOH" BROAD ABBREVIATION [BIRNLEX:1440, NIFSTD:NeuroNames_abbrevSource] +synonym: "SOH" BROAD OMO:0003000 [BIRNLEX:1440, NIFSTD:NeuroNames_abbrevSource] synonym: "supra-opticohypophysial tract" EXACT [FMA:62054] synonym: "supraopticohypophyseal tract" EXACT [FMA:62054] synonym: "tractus hypothalamico-hypophyseus" RELATED LATIN [NeuroNames:391] @@ -57527,7 +57527,7 @@ relationship: part_of UBERON:0002550 {source="FMA", source="NIFSTD"} ! anterior id: UBERON:0002700 name: subcuneiform nucleus synonym: "nucleus subcuneiformis" RELATED LATIN [NeuroNames:503] -synonym: "SubCn" BROAD ABBREVIATION [BIRNLEX:1441, NIFSTD:NeuroNames_abbrevSource] +synonym: "SubCn" BROAD OMO:0003000 [BIRNLEX:1441, NIFSTD:NeuroNames_abbrevSource] synonym: "subcuneiform area of midbrain" EXACT [FMA:72428] xref: BAMS:SubCn xref: BIRNLEX:1441 @@ -57543,7 +57543,7 @@ relationship: part_of UBERON:0002639 {source="NIFSTD"} ! midbrain reticular form [Term] id: UBERON:0002701 name: anterior median oculomotor nucleus -synonym: "AM3" BROAD ABBREVIATION [BIRNLEX:1445, NIFSTD:Paxinos-Franklin-mouse-2001_abbrevSource] +synonym: "AM3" BROAD OMO:0003000 [BIRNLEX:1445, NIFSTD:Paxinos-Franklin-mouse-2001_abbrevSource] synonym: "anterior medial visceral nucleus" EXACT [FMA:54524] synonym: "anterior median nucleus of oculomotor nerve" EXACT [FMA:72423] synonym: "anterior median nucleus of oculomotor nuclear complex" EXACT [http://orcid.org/0000-0002-6601-2165] @@ -57630,7 +57630,7 @@ synonym: "geniculate group of dorsal thalamus" RELATED [BAMS:GENd] synonym: "geniculate group of the dorsal thalamus" EXACT [FMA:62023] synonym: "geniculate thalamic group" EXACT [MA:0000868] synonym: "geniculate thalamic nuclear group (metathalamus)" RELATED [BAMS:GENd] -synonym: "MTh" BROAD ABBREVIATION [BIRNLEX:1461, NIFSTD:NeuroNames_abbrevSource] +synonym: "MTh" BROAD OMO:0003000 [BIRNLEX:1461, NIFSTD:NeuroNames_abbrevSource] synonym: "nuclei metathalami" EXACT [BIRNLEX:1461] xref: BAMS:GENd xref: BAMS:Metathalamus @@ -57694,7 +57694,7 @@ synonym: "area hypothalamica posterior" EXACT LATIN [FMA:62350, FMA:TA] synonym: "area posterior hypothalami" RELATED LATIN [NeuroNames:420] synonym: "nucleus hypothalamicus posterior" RELATED LATIN [NeuroNames:420] synonym: "nucleus posterior hypothalami" RELATED [BTO:0002461] -synonym: "PH" BROAD ABBREVIATION [BIRNLEX:1463, NIFSTD:NeuroNames_abbrevSource] +synonym: "PH" BROAD OMO:0003000 [BIRNLEX:1463, NIFSTD:NeuroNames_abbrevSource] synonym: "posterior hypothalamic area" EXACT [FMA:62350] synonym: "posterior hypothalamic nucleus" EXACT [FMA:62350] synonym: "posterior nucleus" RELATED [NeuroNames:420] @@ -57772,7 +57772,7 @@ synonym: "posterior periventricular hypothalamic nucleus" EXACT [BIRNLEX:1466] synonym: "posterior periventricular nucleus" EXACT [FMA:62349] synonym: "posterior periventricular nucleus of hypothalamus" EXACT [FMA:62349] synonym: "posterior periventricular nucleus of the hypothalamus" EXACT [BAMS:PVp] -synonym: "PPe" BROAD ABBREVIATION [BIRNLEX:1466, NIFSTD:NeuroNames_abbrevSource] +synonym: "PPe" BROAD OMO:0003000 [BIRNLEX:1466, NIFSTD:NeuroNames_abbrevSource] xref: BAMS:PPe xref: BAMS:PVp xref: BIRNLEX:1466 @@ -57793,7 +57793,7 @@ subset: vertebrate_core synonym: "caudal thalamic nucleus" EXACT [TAO:0000325] synonym: "nuclei posteriores thalami" EXACT [BIRNLEX:1467] synonym: "parieto-occipital" RELATED [BAMS:PO] -synonym: "PNC" BROAD ABBREVIATION [BIRNLEX:1467, NIFSTD:NeuroNames_abbrevSource] +synonym: "PNC" BROAD OMO:0003000 [BIRNLEX:1467, NIFSTD:NeuroNames_abbrevSource] synonym: "posterior complex of thalamus" EXACT [FMA:62024] synonym: "posterior complex of the thalamus" EXACT [BAMS:PO] synonym: "posterior nuclear complex" EXACT [FMA:62024] @@ -57830,7 +57830,7 @@ subset: uberon_slim synonym: "calloso-marginal sulcus" EXACT [FMA:83748] synonym: "callosomarginal fissure" EXACT [FMA:83748] synonym: "callosomarginal sulcus" EXACT [FMA:83748] -synonym: "CGS" BROAD ABBREVIATION [BIRNLEX:1468, NIFSTD:NeuroNames_abbrevSource] +synonym: "CGS" BROAD OMO:0003000 [BIRNLEX:1468, NIFSTD:NeuroNames_abbrevSource] synonym: "cingulate fissure" EXACT [FMA:83748] synonym: "sulcus callosomarginalis" EXACT [BIRNLEX:1468] synonym: "sulcus cingulatus" EXACT [BIRNLEX:1468] @@ -57861,7 +57861,7 @@ synonym: "nucleus commissuralis posterioris" RELATED LATIN [NeuroNames:511] synonym: "nucleus interstitialis of posterior commissure" RELATED LATIN [NeuroNames:511] synonym: "nucleus of Darkschewitsch" NARROW [] synonym: "nucleus of the posterior commissure" RELATED [NeuroNames:511] -synonym: "PCom" BROAD ABBREVIATION [BIRNLEX:1470, NIFSTD:NeuroNames_abbrevSource] +synonym: "PCom" BROAD OMO:0003000 [BIRNLEX:1470, NIFSTD:NeuroNames_abbrevSource] synonym: "posterior commissure nucleus" EXACT [FMA:68463] xref: BAMS:NPC xref: BAMS:PCN @@ -57887,7 +57887,7 @@ id: UBERON:0002712 name: premammillary nucleus synonym: "nuclei premamillaris" RELATED LATIN [NeuroNames:418] synonym: "nucleus premamillaris hypothalami" RELATED LATIN [NeuroNames:418] -synonym: "PMm" BROAD ABBREVIATION [BIRNLEX:1473, NIFSTD:NeuroNames_abbrevSource] +synonym: "PMm" BROAD OMO:0003000 [BIRNLEX:1473, NIFSTD:NeuroNames_abbrevSource] synonym: "premamillary nucleus" RELATED [NeuroNames:418] synonym: "premammillary nuclei" EXACT [FMA:62348] xref: BAMS:PM @@ -57918,7 +57918,7 @@ synonym: "ciruclar insular sulcus" EXACT [BIRNLEX:1475] synonym: "cortex of island marginal branch of cingulate sulcus" EXACT [OBOL:automatic] synonym: "cortex of island marginal ramus of cingulate sulcus" EXACT [OBOL:automatic] synonym: "cortex of island marginal sulcus" EXACT [OBOL:automatic] -synonym: "CRS" BROAD ABBREVIATION [BIRNLEX:1475, NIFSTD:NeuroNames_abbrevSource] +synonym: "CRS" BROAD OMO:0003000 [BIRNLEX:1475, NIFSTD:NeuroNames_abbrevSource] synonym: "cruciform sulcus" RELATED [BAMS:crs] synonym: "insula lobule marginal branch of cingulate sulcus" EXACT [OBOL:automatic] synonym: "insula lobule marginal ramus of cingulate sulcus" EXACT [OBOL:automatic] @@ -58026,7 +58026,7 @@ name: collateral sulcus def: "The collateral fissure (or sulcus) is on the tentorial surface of the hemisphere and extends from near the occipital pole to within a short distance of the temporal pole. Behind, it lies below and lateral to the calcarine fissure, from which it is separated by the lingual gyrus; in front, it is situated between the hippocampal gyrus and the anterior part of the fusiform gyrus. [WP,unvetted]." [Wikipedia:Collateral_fissure] subset: uberon_slim synonym: "collateral fissure" EXACT [FMA:83751] -synonym: "COS" BROAD ABBREVIATION [BIRNLEX:1480, NIFSTD:NeuroNames_abbrevSource] +synonym: "COS" BROAD OMO:0003000 [BIRNLEX:1480, NIFSTD:NeuroNames_abbrevSource] synonym: "fissura collateralis" RELATED LATIN [Wikipedia:Collateral_fissure] synonym: "sulcus collateralis" EXACT [BIRNLEX:1480] synonym: "sulcus collateralis" RELATED LATIN [Wikipedia:Collateral_fissure] @@ -58052,7 +58052,7 @@ def: "The rostral interstitial nucleus of medial longitudinal fasciculus (riMLF) subset: uberon_slim synonym: "nucleus interstitialis" RELATED LATIN [Wikipedia:Rostral_interstitial_nucleus_of_medial_longitudinal_fasciculus] synonym: "nucleus interstitialis rostralis" RELATED LATIN [NeuroNames:516] -synonym: "RI" BROAD ABBREVIATION [BIRNLEX:1481, NIFSTD:NeuroNames_abbrevSource] +synonym: "RI" BROAD OMO:0003000 [BIRNLEX:1481, NIFSTD:NeuroNames_abbrevSource] synonym: "riMLF" EXACT [http://orcid.org/0000-0002-6601-2165] synonym: "rostral interstitial nucleus of MLF" EXACT [FMA:72433] synonym: "rostral interstitial nucleus of the medial longitudinal fasciculus" RELATED [NeuroNames:516] @@ -58123,7 +58123,7 @@ id: UBERON:0002720 name: mammillary peduncle def: "White matter bundle in the posterior hypothalamus containing ascending afferent fibers to the mammillary bodies from the ventral and dorsal tegmental nuclei (Brodal, Neurological Anatomy, 3rd ed., 1981, pg 671)." [BIRNLEX:1486] synonym: "mammillary peduncle (Meynert)" RELATED [NeuroNames:425] -synonym: "MPE" BROAD ABBREVIATION [BIRNLEX:1486, NIFSTD:NeuroNames_abbrevSource] +synonym: "MPE" BROAD OMO:0003000 [BIRNLEX:1486, NIFSTD:NeuroNames_abbrevSource] synonym: "peduncle of mammillary body" EXACT [FMA:62061] synonym: "pedunculus corporis mamillaris" RELATED LATIN [NeuroNames:425] synonym: "pedunculus corporis mammillaris" RELATED LATIN [NeuroNames:425] @@ -58156,7 +58156,7 @@ synonym: "lateral cerebral fissure" EXACT [FMA:77801] synonym: "lateral cerebral sulcus" EXACT [FMA:77801] synonym: "lateral fissure" EXACT [FMA:77801] synonym: "lateral fissure of Sylvius" EXACT [] -synonym: "LS" BROAD ABBREVIATION [BIRNLEX:1487, NIFSTD:NeuroNames_abbrevSource] +synonym: "LS" BROAD OMO:0003000 [BIRNLEX:1487, NIFSTD:NeuroNames_abbrevSource] synonym: "sulcus cerebri lateralis (Sylvii)" RELATED LATIN [NeuroNames:49] synonym: "sulcus lateralis" EXACT [BIRNLEX:1487] synonym: "sulcus lateralis cerebri" EXACT LATIN [FMA:77801, FMA:TA, Wikipedia:Lateral_sulcus] @@ -58235,7 +58235,7 @@ name: mammillary princeps fasciculus synonym: "fasciculus mamillaris" RELATED LATIN [NeuroNames:422] synonym: "fasciculus mamillaris princeps" RELATED LATIN [NeuroNames:422] synonym: "fasciculus mammillaris princeps" RELATED LATIN [NeuroNames:422] -synonym: "MPR" BROAD ABBREVIATION [BIRNLEX:1492, NIFSTD:NeuroNames_abbrevSource] +synonym: "MPR" BROAD OMO:0003000 [BIRNLEX:1492, NIFSTD:NeuroNames_abbrevSource] synonym: "principal mammillary fasciculus" EXACT [FMA:62057] synonym: "principal mammillary tract" EXACT [BIRNLEX:1492] synonym: "principal mammillary tract (Kvlliker)" RELATED [NeuroNames:422] @@ -58262,7 +58262,7 @@ synonym: "insula limen" EXACT [FMA:75266] synonym: "limen insula" RELATED [NeuroNames:50] synonym: "limen insulae" EXACT [BIRNLEX:1493] synonym: "limen of the insula" RELATED [NeuroNames:50] -synonym: "LMI" BROAD ABBREVIATION [BIRNLEX:1493, NIFSTD:NeuroNames_abbrevSource] +synonym: "LMI" BROAD OMO:0003000 [BIRNLEX:1493, NIFSTD:NeuroNames_abbrevSource] xref: BAMS:lmi xref: BIRNLEX:1493 xref: DHBA:12179 @@ -58459,7 +58459,7 @@ id: UBERON:0002733 name: intralaminar nuclear group def: "The intralaminar nucleus is a nucleus of the thalamus that contains the following nuclei: central lateral centromedian (or 'central medial') paracentral parafascicular. Some sources also include a 'central dorsal' nucleus. [WP,unvetted]." [Wikipedia:Intralaminar_thalamic_nuclei] subset: uberon_slim -synonym: "ILG" BROAD ABBREVIATION [BIRNLEX:1530, NIFSTD:NeuroNames_abbrevSource] +synonym: "ILG" BROAD OMO:0003000 [BIRNLEX:1530, NIFSTD:NeuroNames_abbrevSource] synonym: "intralaminar group of the dorsal thalamus" RELATED [BAMS:ILM] synonym: "intralaminar nuclear complex" EXACT [DHBA:ILN] synonym: "intralaminar nuclear group" EXACT [FMA:62021] @@ -58497,7 +58497,7 @@ id: UBERON:0002734 name: superior temporal sulcus def: "The superior temporal sulcus is the sulcus separating the superior temporal gyrus from the middle temporal gyrus in the temporal lobe of the brain. The superior temporal sulcus is the first sulcus inferior to the lateral fissure. It is involved in the perception of where others are gazing and is thus important in determining where others' emotions are being directed. It is also involved in the perception of biological motion." [Wikipedia:Superior_temporal_sulcus] synonym: "parallel sulcus" EXACT [FMA:83783] -synonym: "STS" BROAD ABBREVIATION [BIRNLEX:1534, NIFSTD:NeuroNames_abbrevSource] +synonym: "STS" BROAD OMO:0003000 [BIRNLEX:1534, NIFSTD:NeuroNames_abbrevSource] synonym: "sulcus t1" EXACT [FMA:83783] synonym: "sulcus temporalis primus" RELATED LATIN [NeuroNames:129] synonym: "sulcus temporalis superior" RELATED LATIN [NeuroNames:129] @@ -58556,7 +58556,7 @@ synonym: "lateral thalamic nuclear group" RELATED [BAMS:LAT] synonym: "lateral thalamic nuclear region" RELATED [BAMS:LTh] synonym: "lateral thalamic nuclei" EXACT [FMA:62174] synonym: "lateral thalamic nucleus" EXACT [BIRNLEX:1537] -synonym: "LNG" BROAD ABBREVIATION [BIRNLEX:1537, NIFSTD:NeuroNames_abbrevSource] +synonym: "LNG" BROAD OMO:0003000 [BIRNLEX:1537, NIFSTD:NeuroNames_abbrevSource] synonym: "nuclei laterales thalami" EXACT [BIRNLEX:1537] synonym: "nucleus lateralis thalami" EXACT [BIRNLEX:1537] xref: BAMS:LAT @@ -58680,10 +58680,10 @@ id: UBERON:0002740 name: posterior cingulate gyrus def: "The posterior cingulate cortex is the backmost part of the cingulate cortex, lying behind the anterior cingulate cortex. This is the upper part of the 'limbic lobe'. The cingulate cortex is made up of an area around the midline of the brain. Surrounding areas include the retrosplenial cortex and the precuneus. Cytoarchitectonically posterior cingulate cortex is associated with Brodmann areas 23 and 31. [WP,unvetted]." [Wikipedia:Posterior_cingulate_gyrus] subset: uberon_slim -synonym: "cGp" BROAD ABBREVIATION [FMA:61924, FMA:CMA] +synonym: "cGp" BROAD OMO:0003000 [FMA:61924, FMA:CMA] synonym: "gyrus cinguli posterior" RELATED LATIN [NeuroNames:162] synonym: "gyrus limbicus posterior" RELATED LATIN [NeuroNames:162] -synonym: "PCgG" BROAD ABBREVIATION [BIRNLEX:1546, NIFSTD:NeuroNames_abbrevSource] +synonym: "PCgG" BROAD OMO:0003000 [BIRNLEX:1546, NIFSTD:NeuroNames_abbrevSource] synonym: "posterior cingulate" RELATED [NeuroNames:162] xref: BAMS:PCgG xref: BIRNLEX:1546 @@ -58817,7 +58817,7 @@ synonym: "hPe" EXACT LATIN [FMA:62328, FMA:TA] synonym: "intermediate periventricular hypothalamic nucleus" RELATED [BAMS:IPe] synonym: "intermediate periventricular nucleus of hypothalamus" EXACT [FMA:62328] synonym: "intermediate periventricular nucleus of the hypothalamus" RELATED [BAMS:PVI] -synonym: "IPe" BROAD ABBREVIATION [BIRNLEX:1564, NIFSTD:NeuroNames_abbrevSource] +synonym: "IPe" BROAD OMO:0003000 [BIRNLEX:1564, NIFSTD:NeuroNames_abbrevSource] synonym: "nucleus periventricularis hypothalami" RELATED LATIN [NeuroNames:394] synonym: "periventricular hypothalamic nucleus, intermediate part" RELATED [NeuroNames:394] synonym: "periventricular nucleus at the tuberal level" EXACT [FMA:62328] @@ -58899,7 +58899,7 @@ subset: uberon_slim synonym: "gyrus temporalis inferior" EXACT [BIRNLEX:1577] synonym: "gyrus temporalis inferior" RELATED LATIN [Wikipedia:Inferior_temporal_gyrus] synonym: "inferotemporal cortex" RELATED [Wikipedia:Inferior_temporal_gyrus] -synonym: "IT cortex" RELATED ABBREVIATION [Wikipedia:Inferior_temporal_gyrus] +synonym: "IT cortex" RELATED OMO:0003000 [Wikipedia:Inferior_temporal_gyrus] synonym: "lateral occipitotemporal gyrus (heimer-83)" EXACT [] xref: BAMS:ITG xref: BIRNLEX:1577 @@ -59028,7 +59028,7 @@ id: UBERON:0002756 name: anterior cingulate gyrus subset: uberon_slim synonym: "anterior cingulate" RELATED [NeuroNames:161] -synonym: "cGa" BROAD ABBREVIATION [FMA:61916, FMA:CMA] +synonym: "cGa" BROAD OMO:0003000 [FMA:61916, FMA:CMA] synonym: "cingulate gyrus, anterior division" BROAD [http://orcid.org/0000-0001-6755-0259] synonym: "cortex cingularis anterior" RELATED LATIN [NeuroNames:161] synonym: "gyrus cinguli anterior" RELATED LATIN [NeuroNames:161] @@ -59058,7 +59058,7 @@ consider: FMA:62013 id: UBERON:0002758 name: dorsal nucleus of medial geniculate body def: "Dorsal division of the medial geniculate nucleus, as first defined by Morest (1964) in the cat, but also described in the rat. It fills all but the medial edge of the posterior tip in cat, and joins the lateral thalamic nucleus anteriorly (http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1261345/?page=3)." [BIRNLEX:1608] -synonym: "DMG" BROAD ABBREVIATION [BIRNLEX:1608, NIFSTD:NeuroNames_abbrevSource] +synonym: "DMG" BROAD OMO:0003000 [BIRNLEX:1608, NIFSTD:NeuroNames_abbrevSource] synonym: "dorsal medial geniculate nucleus" RELATED [BAMS:MGD] synonym: "dorsal nucleus of medial geniculate complex" EXACT [FMA:62216] synonym: "dorsal nucleus of the medial geniculate body" RELATED [NeuroNames:356] @@ -59066,7 +59066,7 @@ synonym: "medial geniculate complex dorsal part" RELATED [BAMS:MGd] synonym: "medial geniculate complex, dorsal part" EXACT [BIRNLEX:1608] synonym: "medial geniculate nucleus dorsal part" RELATED [BAMS:MGD, BAMS:MGd] synonym: "medial geniculate nucleus, dorsal part" EXACT [BIRNLEX:1608] -synonym: "MGD" BROAD ABBREVIATION [BIRNLEX:1608, NIFSTD:NeuroNames_abbrevSource] +synonym: "MGD" BROAD OMO:0003000 [BIRNLEX:1608, NIFSTD:NeuroNames_abbrevSource] synonym: "nucleus corporis geniculati medialis, pars dorsalis" EXACT [BIRNLEX:1608] synonym: "nucleus dorsalis coporis geniculati medialis" RELATED [BTO:0002673] synonym: "nucleus dorsalis corporis geniculati medialis" EXACT LATIN [FMA:62216, FMA:TA] @@ -59103,7 +59103,7 @@ synonym: "medial geniculate nucleus medial part" RELATED [BAMS:MGM, BAMS:MGm] synonym: "medial geniculate nucleus, medial part" EXACT [FMA:62218] synonym: "medial magnocellular nucleus of medial geniculate body" EXACT [FMA:62218] synonym: "medial nucleus of medial geniculate body" EXACT [FMA:62218] -synonym: "MMG" BROAD ABBREVIATION [BIRNLEX:1612, NIFSTD:NeuroNames_abbrevSource] +synonym: "MMG" BROAD OMO:0003000 [BIRNLEX:1612, NIFSTD:NeuroNames_abbrevSource] synonym: "nucleus corporis geniculati medialis, pars magnocelluaris" EXACT [BIRNLEX:1612] synonym: "nucleus corporis geniculati medialis, pars magnocellularis" RELATED LATIN [NeuroNames:358] synonym: "nucleus geniculatus medialis magnocelluaris (hassler)" EXACT [BIRNLEX:1612] @@ -59170,7 +59170,7 @@ id: UBERON:0002761 name: inferior frontal sulcus def: "The inferior frontal sulcus is a sulcus between the middle frontal gyrus and the inferior frontal gyrus. [WP,unvetted]." [Wikipedia:Inferior_frontal_sulcus] subset: uberon_slim -synonym: "IFRS" BROAD ABBREVIATION [BIRNLEX:1619, NIFSTD:NeuroNames_abbrevSource] +synonym: "IFRS" BROAD OMO:0003000 [BIRNLEX:1619, NIFSTD:NeuroNames_abbrevSource] synonym: "inferior frontal fissure" EXACT [FMA:83757] synonym: "sulcus f2" EXACT [FMA:83757] synonym: "sulcus frontalis inferior" RELATED LATIN [Wikipedia:Inferior_frontal_sulcus] @@ -59329,7 +59329,7 @@ property_value: depicted_by "http://upload.wikimedia.org/wikipedia/commons/f/fe/ [Term] id: UBERON:0002767 name: inferior rostral sulcus -synonym: "IROS" BROAD ABBREVIATION [BIRNLEX:1642, NIFSTD:NeuroNames_abbrevSource] +synonym: "IROS" BROAD OMO:0003000 [BIRNLEX:1642, NIFSTD:NeuroNames_abbrevSource] synonym: "sulcus rostralis inferior" EXACT [BIRNLEX:1642] xref: BAMS:iros xref: BIRNLEX:1642 @@ -59402,7 +59402,7 @@ def: "The part of the hypothalamus posterior to the middle region consisting of synonym: "hypothalamus posterior" RELATED LATIN [NeuroNames:411] synonym: "mammillary level of hypothalamus" EXACT [FMA:62029] synonym: "mammillary region" EXACT [FMA:62029] -synonym: "PHR" BROAD ABBREVIATION [BIRNLEX:1651, NIFSTD:NeuroNames_abbrevSource] +synonym: "PHR" BROAD OMO:0003000 [BIRNLEX:1651, NIFSTD:NeuroNames_abbrevSource] synonym: "posterior hypothalamus" EXACT [FMA:62029] synonym: "regio hypothalamica posterior" RELATED LATIN [NeuroNames:411] xref: BAMS:PH @@ -59451,7 +59451,7 @@ name: olfactory sulcus def: "The medial orbital gyrus presents a well-marked antero-posterior sulcus, the olfactory sulcus, for the olfactory tract. [WP,unvetted]." [Wikipedia:Olfactory_sulcus] subset: uberon_slim synonym: "olfactory groove" EXACT [BIRNLEX:1655] -synonym: "OLFS" BROAD ABBREVIATION [BIRNLEX:1655, NIFSTD:NeuroNames_abbrevSource] +synonym: "OLFS" BROAD OMO:0003000 [BIRNLEX:1655, NIFSTD:NeuroNames_abbrevSource] synonym: "sulcus olfactorius" EXACT [BIRNLEX:1655] synonym: "sulcus olfactorius lobi frontalis" RELATED LATIN [Wikipedia:Olfactory_sulcus] xref: BAMS:olfs @@ -59541,7 +59541,7 @@ synonym: "ventral nuclear mass" EXACT [FMA:62022] synonym: "ventral nuclei of thalamus" EXACT [FMA:62022] synonym: "ventral thalamus nucleus" RELATED [ZFA:0005576] synonym: "ventral tier thalamic nuclei" EXACT [FMA:62022] -synonym: "VNG" BROAD ABBREVIATION [BIRNLEX:1669, NIFSTD:NeuroNames_abbrevSource] +synonym: "VNG" BROAD OMO:0003000 [BIRNLEX:1669, NIFSTD:NeuroNames_abbrevSource] xref: BAMS:VENT xref: BAMS:VNG xref: BIRNLEX:1669 @@ -59604,7 +59604,7 @@ synonym: "accessory superior olivary nucleus" EXACT [FMA:72472] synonym: "accessory superior olive" EXACT [FMA:72472] synonym: "inferior olivary complex dorsalaccessory nucleus" RELATED [BAMS:IOda] synonym: "lateral superior olive" EXACT [FMA:72472] -synonym: "LSON" EXACT ABBREVIATION [] +synonym: "LSON" EXACT OMO:0003000 [] synonym: "nucleus olivaris superior lateralis" RELATED LATIN [NeuroNames:571] synonym: "superior olivary complex, lateral part" RELATED [NeuroNames:571] synonym: "superior olivary nucleus, lateral part" EXACT [FMA:72472] @@ -59652,7 +59652,7 @@ synonym: "ventral posterior lateral nucleus (ilinsky)" EXACT [] synonym: "ventral posterolateral nucleus, caudal part" EXACT [FMA:62206] synonym: "ventral posterolateral thalamic nucleus, caudal part" EXACT [FMA:62206] synonym: "ventral posterolateral thalamic nucleus, posterior part" RELATED [BAMS:VPLp] -synonym: "VPLC" BROAD ABBREVIATION [BIRNLEX:1681, NIFSTD:NeuroNames_abbrevSource] +synonym: "VPLC" BROAD OMO:0003000 [BIRNLEX:1681, NIFSTD:NeuroNames_abbrevSource] xref: BAMS:VPLC xref: BAMS:VPLp xref: BIRNLEX:1681 @@ -59673,7 +59673,7 @@ synonym: "chief nucleus of superior olive" EXACT [FMA:72473] synonym: "chief superior olivary nucleus" EXACT [FMA:72473] synonym: "main superior olivary nucleus" EXACT [FMA:72473] synonym: "medial superior olive" EXACT [FMA:72473] -synonym: "MSO" RELATED ABBREVIATION [BIRNLEX:1682] +synonym: "MSO" RELATED OMO:0003000 [BIRNLEX:1682] synonym: "nucleus laminaris" RELATED [BIRNLEX:1682] synonym: "nucleus olivaris superior medialis" RELATED LATIN [NeuroNames:572] synonym: "principal superior olivary nucleus" EXACT [FMA:72473] @@ -59792,7 +59792,7 @@ name: anterior nuclear group def: "Mostly gray regional part of anterior thalamic region, consisting of the anterior medial, anterior dorsal and anterior lateral thalamic nuclei in primates. In rodents, it consists of anterior medial and anterior ventral divisions, with several subdivisions of each, according to Paxinos (MM: 2006-10-26)." [BIRNLEX:1692] subset: uberon_slim subset: vertebrate_core -synonym: "ANG" BROAD ABBREVIATION [BIRNLEX:1692, NIFSTD:NeuroNames_abbrevSource] +synonym: "ANG" BROAD OMO:0003000 [BIRNLEX:1692, NIFSTD:NeuroNames_abbrevSource] synonym: "anterior group of thalamus" RELATED [BAMS:ATN] synonym: "anterior group of the dorsal thalamus" RELATED [BAMS:ATN] synonym: "anterior nuclear group" EXACT [FMA:62019] @@ -60055,7 +60055,7 @@ relationship: part_of UBERON:0007703 ! spinothalamic tract id: UBERON:0002799 name: fronto-orbital sulcus synonym: "fronto-orbital dimple" EXACT [FMA:83768] -synonym: "FROS" BROAD ABBREVIATION [BIRNLEX:1724, NIFSTD:NeuroNames_abbrevSource] +synonym: "FROS" BROAD OMO:0003000 [BIRNLEX:1724, NIFSTD:NeuroNames_abbrevSource] synonym: "orbito-frontal sulcus" EXACT [FMA:83768] synonym: "orbitofrontal sulcus" EXACT [BM:Tel-Cx-OFS] synonym: "sulcus fronto-orbitalis" RELATED LATIN [NeuroNames:77] @@ -60539,7 +60539,7 @@ synonym: "c1281209" EXACT [BIRNLEX:2567] synonym: "nucleus acustici accessorici" RELATED LATIN [NeuroNames:722] synonym: "nucleus cochlearis anterior" RELATED LATIN [NeuroNames:722] synonym: "nucleus cochlearis ventralis" RELATED LATIN [NeuroNames:722] -synonym: "VCo" BROAD ABBREVIATION [BIRNLEX:2567, NIFSTD:NeuroNames_abbrevSource] +synonym: "VCo" BROAD OMO:0003000 [BIRNLEX:2567, NIFSTD:NeuroNames_abbrevSource] synonym: "ventral cochlear nuclei" RELATED [NeuroNames:722] synonym: "ventral cochlear nucleus" EXACT [FMA:54621] synonym: "ventral coclear nucleus" RELATED [BAMS:VCO] @@ -60566,7 +60566,7 @@ id: UBERON:0002829 name: dorsal cochlear nucleus def: "The dorsal cochlear nucleus (DCN, also known as the 'tuberculum acousticum'), is a cortex-like structure on the dorso-lateral surface of the brainstem. Along with the ventral cochlear nucleus, it forms the cochlear nucleus, where all auditory nerve fibers from the cochlea form their first synapses. [WP,unvetted]." [Wikipedia:Dorsal_cochlear_nucleus] subset: uberon_slim -synonym: "DCo" BROAD ABBREVIATION [BIRNLEX:2569, NIFSTD:NeuroNames_abbrevSource] +synonym: "DCo" BROAD OMO:0003000 [BIRNLEX:2569, NIFSTD:NeuroNames_abbrevSource] synonym: "dorsal cochlear nucleus" EXACT [FMA:54624] synonym: "dorsal coclear nucleus" RELATED [BAMS:DCO] synonym: "dorsal division of cochlear nucleus" EXACT [FMA:54624] @@ -60601,7 +60601,7 @@ synonym: "anterior part of anterior cochlear nucleus" EXACT [BIRNLEX:2572] synonym: "anterior part of the ventral cochlear nucleus" RELATED [NeuroNames:723] synonym: "anterior ventral cochlear nucleus" RELATED [NeuroNames:723] synonym: "anteroventral auditory nucleus" EXACT [FMA:72571] -synonym: "AVCo" BROAD ABBREVIATION [BIRNLEX:2572, NIFSTD:NeuroNames_abbrevSource] +synonym: "AVCo" BROAD OMO:0003000 [BIRNLEX:2572, NIFSTD:NeuroNames_abbrevSource] synonym: "nucleus cochlearis anteroventralis" RELATED LATIN [NeuroNames:723] synonym: "nucleus magnocellularis" EXACT [BIRNLEX:2572] synonym: "ventral cochlear nucleus, anterior part" RELATED [NeuroNames:723] @@ -60624,7 +60624,7 @@ synonym: "nucleus cochlearis posteroventralis" RELATED LATIN [NeuroNames:724] synonym: "posterior part of anterior cochlear nucleus" EXACT [BIRNLEX:2573] synonym: "posterior part of the ventral cochlear nucleus" RELATED [NeuroNames:724] synonym: "posterior ventral cochlear nucleus" RELATED [NeuroNames:724] -synonym: "PVCo" BROAD ABBREVIATION [BIRNLEX:2573, NIFSTD:NeuroNames_abbrevSource] +synonym: "PVCo" BROAD OMO:0003000 [BIRNLEX:2573, NIFSTD:NeuroNames_abbrevSource] synonym: "ventral cochlear nucleus, posterior part" RELATED [NeuroNames:724] synonym: "ventral coclear nucleus posterior part" RELATED [NeuroNames:724] xref: BAMS:PVCo @@ -60645,7 +60645,7 @@ synonym: "anterior nucleus of trapezoid body" EXACT [FMA:72477] synonym: "nucleus anterior corporis trapezoidei" EXACT LATIN [FMA:72477, FMA:TA] synonym: "nucleus ventralis corporis trapezoidei" EXACT LATIN [NeuroNames:1283] synonym: "ventral trapezoid nucleus" EXACT [http://orcid.org/0000-0002-6601-2165] -synonym: "VNTB" EXACT ABBREVIATION [] +synonym: "VNTB" EXACT OMO:0003000 [] xref: BIRNLEX:2576 xref: DHBA:12461 xref: FMA:72477 @@ -60662,7 +60662,7 @@ relationship: ventral_to UBERON:0002782 ! medial superior olivary nucleus id: UBERON:0002833 name: medial nucleus of trapezoid body def: "Nucleus in the pontine tegmentum of most mammals that receives projections from the ventral cochlear nucleus via the large specialized synapse, the Calyx of Held. It is not clear whether a well defined nucleus is present in humans, although humans may possess scattered cells with similar input." [BIRNLEX:2595] -synonym: "MNTB" EXACT ABBREVIATION [] +synonym: "MNTB" EXACT OMO:0003000 [] xref: BIRNLEX:2595 xref: DHBA:12460 xref: FMA:75732 @@ -61053,7 +61053,7 @@ id: UBERON:0002864 name: accessory cuneate nucleus def: "The accessory cuneate nucleus is located lateral to the cuneate nucleus in the medulla oblongata at the level of the sensory decussation. It receives input from cervical spinal nerves and transmits that information to the cerebellum. These fibers are called cuneocerebellar fibers. In this function, the accessory cuneate nucleus is comparable to the upper extremity portion of the posterior spinocerebellar tract. [WP,unvetted]." [Wikipedia:Accessory_cuneate_nucleus] subset: uberon_slim -synonym: "ACu" BROAD ABBREVIATION [BIRNLEX:2634, NIFSTD:NeuroNames_abbrevSource] +synonym: "ACu" BROAD OMO:0003000 [BIRNLEX:2634, NIFSTD:NeuroNames_abbrevSource] synonym: "external cuneate nucleus" EXACT [FMA:72603] synonym: "external cuneate nucleus" RELATED [BIRNLEX:2634] synonym: "external cuneate nucleus (Monakow, Blumenau 1891)" RELATED [NeuroNames:768] @@ -61093,7 +61093,7 @@ property_value: depicted_by "http://upload.wikimedia.org/wikipedia/commons/9/94/ [Term] id: UBERON:0002865 name: arcuate nucleus of medulla -synonym: "ArcM" BROAD ABBREVIATION [BIRNLEX:2635, NIFSTD:NeuroNames_abbrevSource] +synonym: "ArcM" BROAD OMO:0003000 [BIRNLEX:2635, NIFSTD:NeuroNames_abbrevSource] synonym: "arcuate hypothalamic nucleus medial part" RELATED [BAMS:ArcM] synonym: "arcuate hypothalamic nucleus of medulla" EXACT [OBOL:automatic] synonym: "arcuate nucleus (medulla)" RELATED [NeuroNames:775] @@ -61135,7 +61135,7 @@ name: caudal part of spinal trigeminal nucleus synonym: "caudal nucleus" EXACT [BIRNLEX:2637] synonym: "caudal nucleus (kandell)" EXACT [] synonym: "caudal part of the spinal trigeminal nucleus" RELATED [NeuroNames:771] -synonym: "CSp5" BROAD ABBREVIATION [BIRNLEX:2637, NIFSTD:NeuroNames_abbrevSource] +synonym: "CSp5" BROAD OMO:0003000 [BIRNLEX:2637, NIFSTD:NeuroNames_abbrevSource] synonym: "nucleus caudalis tractus spinalis nervi trigemini" RELATED LATIN [NeuroNames:771] synonym: "nucleus spinalis nervi trigemini, pars caudalis" RELATED LATIN [NeuroNames:771] synonym: "spinal nucleus of the trigeminal caudal part" RELATED [BAMS:SPVC] @@ -61170,7 +61170,7 @@ name: central gray substance of medulla synonym: "central gray matter" EXACT [BIRNLEX:2638] synonym: "central gray of the medulla" RELATED [NeuroNames:756] synonym: "central gray substance of the medulla" RELATED [NeuroNames:756] -synonym: "CGM" BROAD ABBREVIATION [BIRNLEX:2638, NIFSTD:NeuroNames_abbrevSource] +synonym: "CGM" BROAD OMO:0003000 [BIRNLEX:2638, NIFSTD:NeuroNames_abbrevSource] synonym: "griseum periventriculare" RELATED LATIN [NeuroNames:756] synonym: "medullary central gray substance" EXACT [FMA:72595] xref: BAMS:CGM @@ -61187,7 +61187,7 @@ relationship: part_of UBERON:0001896 {source="FMA"} ! medulla oblongata [Term] id: UBERON:0002868 name: commissural nucleus of vagus nerve -synonym: "Cm10" BROAD ABBREVIATION [BIRNLEX:2639, NIFSTD:NeuroNames_abbrevSource] +synonym: "Cm10" BROAD OMO:0003000 [BIRNLEX:2639, NIFSTD:NeuroNames_abbrevSource] synonym: "commissural nucleus of the vagus nerve" RELATED [NeuroNames:754] synonym: "commissural nucleus-1" EXACT [FMA:54597] synonym: "nucleus commissuralis" RELATED LATIN [NeuroNames:754] @@ -61205,7 +61205,7 @@ relationship: part_of UBERON:0001896 {source="NIFSTD"} ! medulla oblongata [Term] id: UBERON:0002869 name: diffuse reticular nucleus -synonym: "DRt" BROAD ABBREVIATION [BIRNLEX:2641, NIFSTD:NeuroNames_abbrevSource] +synonym: "DRt" BROAD OMO:0003000 [BIRNLEX:2641, NIFSTD:NeuroNames_abbrevSource] synonym: "Koelliker-Fuse nucleus" EXACT [] synonym: "Kolliker-Fuse nucleus" RELATED [BAMS:KF] synonym: "kolliker-Fuse nucleus" EXACT [FMA:77220] @@ -61411,7 +61411,7 @@ relationship: part_of UBERON:0001717 ! spinal nucleus of trigeminal nerve [Term] id: UBERON:0002874 name: lateral pericuneate nucleus -synonym: "LPCu" BROAD ABBREVIATION [BIRNLEX:2647, NIFSTD:NeuroNames_abbrevSource] +synonym: "LPCu" BROAD OMO:0003000 [BIRNLEX:2647, NIFSTD:NeuroNames_abbrevSource] synonym: "nucleus pericuneatus lateralis" RELATED LATIN [NeuroNames:769] xref: BAMS:LPCu xref: BIRNLEX:2647 @@ -61427,7 +61427,7 @@ relationship: part_of UBERON:0001896 {source="NIFSTD"} ! medulla oblongata [Term] id: UBERON:0002875 name: medial pericuneate nucleus -synonym: "MPCu" BROAD ABBREVIATION [BIRNLEX:2648, NIFSTD:NeuroNames_abbrevSource] +synonym: "MPCu" BROAD OMO:0003000 [BIRNLEX:2648, NIFSTD:NeuroNames_abbrevSource] synonym: "nucleus pericuneatus medialis" RELATED LATIN [NeuroNames:770] xref: BAMS:MPCu xref: BIRNLEX:2648 @@ -61444,7 +61444,7 @@ id: UBERON:0002876 name: nucleus intercalatus alt_id: UBERON:0002878 comment: two NIF classes with the same name -synonym: "In" BROAD ABBREVIATION [BIRNLEX:2654, NIFSTD:NeuroNames_abbrevSource] +synonym: "In" BROAD OMO:0003000 [BIRNLEX:2654, NIFSTD:NeuroNames_abbrevSource] synonym: "intercalated nucleus of medulla" EXACT [FMA:72597] synonym: "intercalated nucleus of the medulla" RELATED [NeuroNames:759] synonym: "nucleus intercalates" RELATED [BAMS:NIS] @@ -61474,7 +61474,7 @@ id: UBERON:0002877 name: parasolitary nucleus synonym: "nucleus fasciculus solitarius" EXACT [BIRNLEX:2653] synonym: "nucleus juxtasolitarius" EXACT [BIRNLEX:2653] -synonym: "PSol" BROAD ABBREVIATION [BIRNLEX:2653, NIFSTD:NeuroNames_abbrevSource] +synonym: "PSol" BROAD OMO:0003000 [BIRNLEX:2653, NIFSTD:NeuroNames_abbrevSource] xref: BAMS:PAS xref: BAMS:PSol xref: BIRNLEX:2653 @@ -61499,7 +61499,7 @@ relationship: part_of UBERON:0001896 {source="NIFSTD"} ! medulla oblongata id: UBERON:0002879 name: peritrigeminal nucleus synonym: "nucleus peritrigeminalis" RELATED LATIN [NeuroNames:762] -synonym: "Pe5" BROAD ABBREVIATION [BIRNLEX:2655, NIFSTD:NeuroNames_abbrevSource] +synonym: "Pe5" BROAD OMO:0003000 [BIRNLEX:2655, NIFSTD:NeuroNames_abbrevSource] xref: BAMS:Pe5 xref: BIRNLEX:2655 xref: DHBA:12658 @@ -61516,7 +61516,7 @@ name: pontobulbar nucleus synonym: "corpus pontobulbare" RELATED LATIN [NeuroNames:774] synonym: "nucleus of circumolivary bundle" EXACT [FMA:72608] synonym: "nucleus pontobulbaris" RELATED LATIN [NeuroNames:774] -synonym: "PnB" BROAD ABBREVIATION [BIRNLEX:2656, NIFSTD:NeuroNames_abbrevSource] +synonym: "PnB" BROAD OMO:0003000 [BIRNLEX:2656, NIFSTD:NeuroNames_abbrevSource] synonym: "pontobulbar body" EXACT [FMA:72608] xref: BAMS:PnB xref: BIRNLEX:2656 @@ -61540,7 +61540,7 @@ synonym: "nucleus parvocellularis nervi hypoglossi" RELATED LATIN [NeuroNames:76 synonym: "nucleus Roller" RELATED LATIN [NeuroNames:763] synonym: "nucleus sublingualis" RELATED LATIN [Wikipedia:Sublingual_nucleus] synonym: "Roller's nucleus" EXACT [] -synonym: "SLg" BROAD ABBREVIATION [BIRNLEX:2657, NIFSTD:NeuroNames_abbrevSource] +synonym: "SLg" BROAD OMO:0003000 [BIRNLEX:2657, NIFSTD:NeuroNames_abbrevSource] xref: BAMS:NR xref: BAMS:Ro xref: BAMS:SLg @@ -61563,7 +61563,7 @@ name: supraspinal nucleus synonym: "nucleus substantiae grisea ventralis" RELATED LATIN [NeuroNames:776] synonym: "nucleus substantiae griseae ventralis" RELATED LATIN [NeuroNames:776] synonym: "nucleus supraspinalis" RELATED LATIN [NeuroNames:776] -synonym: "SSp" BROAD ABBREVIATION [BIRNLEX:2658, NIFSTD:NeuroNames_abbrevSource] +synonym: "SSp" BROAD OMO:0003000 [BIRNLEX:2658, NIFSTD:NeuroNames_abbrevSource] xref: BIRNLEX:2658 xref: BM:SSp xref: DHBA:12661 @@ -61886,7 +61886,7 @@ id: UBERON:0002893 name: nucleus of lateral olfactory tract comment: part of amygdala in FMA but this leads to inconsistency when combined with ABA partitions synonym: "lateral olfactory tract nucleus" EXACT [FMA:61865] -synonym: "NLOT" EXACT ABBREVIATION [] +synonym: "NLOT" EXACT OMO:0003000 [] synonym: "nucleus of the lateral olfactory tract" RELATED [NeuroNames:242] synonym: "nucleus of the lateral olfactory tract (ganser)" EXACT [BIRNLEX:2702] synonym: "nucleus of the olfactory tract" RELATED [BAMS:LOT] @@ -61969,7 +61969,7 @@ property_value: external_ontology_notes "FMA considers this a syn of entorhinal id: UBERON:0002896 name: telodiencephalic fissure synonym: "fissura telo-diencephalica" RELATED LATIN [NeuroNames:28] -synonym: "TDF" BROAD ABBREVIATION [BIRNLEX:4001, NIFSTD:NeuroNames_abbrevSource] +synonym: "TDF" BROAD OMO:0003000 [BIRNLEX:4001, NIFSTD:NeuroNames_abbrevSource] synonym: "telo-diencephalic fissure" EXACT [FMA:83726] xref: BAMS:tdf xref: BIRNLEX:4001 @@ -61981,7 +61981,7 @@ is_a: UBERON:0014466 {source="FMA"} ! subarachnoid fissure [Term] id: UBERON:0002897 name: cistern of lamina terminalis -synonym: "CISLT" BROAD ABBREVIATION [BIRNLEX:4002, NIFSTD:NeuroNames_abbrevSource] +synonym: "CISLT" BROAD OMO:0003000 [BIRNLEX:4002, NIFSTD:NeuroNames_abbrevSource] synonym: "cistern of the lamina terminalis" RELATED [NeuroNames:29] synonym: "cisterna lamina terminalis" EXACT [BIRNLEX:4002] synonym: "cisterna laminae terminalis" RELATED LATIN [NeuroNames:29] @@ -62001,7 +62001,7 @@ name: chiasmatic cistern def: "The region of the subarachnoid space that is located below and anterior to the optic chiasm." [ISBN:0-683-40008-8, MP:0009028] subset: pheno_slim subset: uberon_slim -synonym: "CCIS" BROAD ABBREVIATION [BIRNLEX:4003, NIFSTD:NeuroNames_abbrevSource] +synonym: "CCIS" BROAD OMO:0003000 [BIRNLEX:4003, NIFSTD:NeuroNames_abbrevSource] synonym: "cisterna chiasmatica" EXACT [BIRNLEX:4003] synonym: "cisterna chiasmatica" RELATED LATIN [Wikipedia:Chiasmatic_cistern] synonym: "cisterna chiasmatis" EXACT [BIRNLEX:4003] @@ -62024,7 +62024,7 @@ subset: uberon_slim synonym: "dentate fissure" EXACT [FMA:83747] synonym: "hippocampal fissure" EXACT [FMA:83747] synonym: "hippocampal fissure (Gratiolet)" RELATED [NeuroNames:42] -synonym: "HIS" BROAD ABBREVIATION [BIRNLEX:4004, NIFSTD:NeuroNames_abbrevSource] +synonym: "HIS" BROAD OMO:0003000 [BIRNLEX:4004, NIFSTD:NeuroNames_abbrevSource] synonym: "sulcus hippocampalis" RELATED LATIN [Wikipedia:Hippocampal_sulcus] synonym: "sulcus hippocampi" EXACT [BIRNLEX:4004] synonym: "sulcus hippocampi" RELATED LATIN [Wikipedia:Hippocampal_sulcus] @@ -62053,7 +62053,7 @@ id: UBERON:0002900 name: transverse occipital sulcus def: "The transverse occipital sulcus is a structure in the occipital lobe. The transverse occipital sulcus is continuous with the posterior end of the occipital ramus of the intraparietal sulcus, and runs across the upper part of the lobe, a short distance behind the parietoC6ccipital fissure." [Wikipedia:Transverse_occipital_sulcus] synonym: "sulcus occipitalis transversus" EXACT [BIRNLEX:4013] -synonym: "TOCS" BROAD ABBREVIATION [BIRNLEX:4013, NIFSTD:NeuroNames_abbrevSource] +synonym: "TOCS" BROAD OMO:0003000 [BIRNLEX:4013, NIFSTD:NeuroNames_abbrevSource] xref: BAMS:tocs xref: BIRNLEX:4013 xref: BTO:0003786 @@ -62069,7 +62069,7 @@ relationship: part_of UBERON:0002021 {source="NIFSTD"} ! occipital lobe [Term] id: UBERON:0002901 name: posterior calcarine sulcus -synonym: "PCCS" BROAD ABBREVIATION [BIRNLEX:4015, NIFSTD:NeuroNames_abbrevSource] +synonym: "PCCS" BROAD OMO:0003000 [BIRNLEX:4015, NIFSTD:NeuroNames_abbrevSource] synonym: "postcalcarine sulcus" EXACT [FMA:83787] synonym: "posterior calcarine fissure" EXACT [FMA:83787] synonym: "posterior part of calcarine sulcus" EXACT [FMA:83787] @@ -62088,7 +62088,7 @@ id: UBERON:0002902 name: occipital pole def: "The anterior end of the hemisphere is named the frontal pole. The posterior end is named the occipital pole. The anterior end of the temporal lobe, the temporal pole. [WP,unvetted]." [Wikipedia:Occipital_pole] subset: uberon_slim -synonym: "OCP" BROAD ABBREVIATION [BIRNLEX:4016, NIFSTD:NeuroNames_abbrevSource] +synonym: "OCP" BROAD OMO:0003000 [BIRNLEX:4016, NIFSTD:NeuroNames_abbrevSource] synonym: "polus occipitalis" EXACT LATIN [BIRNLEX:4016] synonym: "polus occipitalis cerebri" RELATED [BTO:0001868] xref: BAMS:OCP @@ -62113,7 +62113,7 @@ id: UBERON:0002903 name: lunate sulcus def: "The lunate sulcus is a structure in the occipital lobe. It is not present in all individuals." [Wikipedia:Lunate_sulcus] synonym: "lunate fissure" EXACT [FMA:83788] -synonym: "LUS" BROAD ABBREVIATION [BIRNLEX:4017, NIFSTD:NeuroNames_abbrevSource] +synonym: "LUS" BROAD OMO:0003000 [BIRNLEX:4017, NIFSTD:NeuroNames_abbrevSource] synonym: "sulcus lunatus" EXACT [BIRNLEX:4017] synonym: "sulcus simialis" EXACT [BIRNLEX:4017] xref: BAMS:lus @@ -62135,7 +62135,7 @@ name: lateral occipital sulcus def: "In the occipital lobe, the lateral occipital sulcus extends from behind forward, and divides the lateral surface of the occipital lobe into a superior and an inferior gyrus, which are continuous in front with the parietal and temporal lobes. [WP,unvetted]." [Wikipedia:Lateral_occipital_sulcus] subset: uberon_slim synonym: "lateral occipital sulcus (H)" RELATED [NeuroNames:143] -synonym: "LOCS" BROAD ABBREVIATION [BIRNLEX:4018, NIFSTD:NeuroNames_abbrevSource] +synonym: "LOCS" BROAD OMO:0003000 [BIRNLEX:4018, NIFSTD:NeuroNames_abbrevSource] synonym: "sulcus occipitalis lateralis" EXACT [BIRNLEX:4018] xref: BAMS:locs xref: BIRNLEX:4018 @@ -62154,7 +62154,7 @@ property_value: depicted_by "http://upload.wikimedia.org/wikipedia/commons/2/2c/ id: UBERON:0002905 name: intralingual sulcus def: "A groove located within the boundaries of the lingual gyrus in the human. Identified by dissection, it is oriented parallel to the inferior margin of the occipital lobe ( Ono-1990; Duvernoy-1992 )." [neuronames:151] -synonym: "ILS" BROAD ABBREVIATION [BIRNLEX:4019, NIFSTD:NeuroNames_abbrevSource] +synonym: "ILS" BROAD OMO:0003000 [BIRNLEX:4019, NIFSTD:NeuroNames_abbrevSource] synonym: "sulcus intralingualis" EXACT [BIRNLEX:4019] xref: BAMS:ils xref: BIRNLEX:4019 @@ -62169,7 +62169,7 @@ property_value: taxon_notes "It is not found in the macaque or in the smooth cer [Term] id: UBERON:0002906 name: anterior occipital sulcus -synonym: "AOCS" BROAD ABBREVIATION [BIRNLEX:4023, NIFSTD:NeuroNames_abbrevSource] +synonym: "AOCS" BROAD OMO:0003000 [BIRNLEX:4023, NIFSTD:NeuroNames_abbrevSource] synonym: "ascending limb of the inferior temporal sulcus" EXACT [BIRNLEX:4023] synonym: "posterior inferior temporal sulcus" EXACT [BIRNLEX:4023] synonym: "sulci occipitales superiores" EXACT [BIRNLEX:4023] @@ -62190,7 +62190,7 @@ id: UBERON:0002907 name: superior postcentral sulcus synonym: "postcentral dimple" EXACT [FMA:83775] synonym: "postcentral sulcus (Peele)" RELATED [NeuroNames:100] -synonym: "SPCS" BROAD ABBREVIATION [BIRNLEX:4025, NIFSTD:NeuroNames_abbrevSource] +synonym: "SPCS" BROAD OMO:0003000 [BIRNLEX:4025, NIFSTD:NeuroNames_abbrevSource] synonym: "sulcus postcentralis superior" EXACT [BIRNLEX:4025] xref: BAMS:spcs xref: BIRNLEX:4025 @@ -62203,7 +62203,7 @@ is_a: UBERON:0013118 ! sulcus of brain [Term] id: UBERON:0002908 name: subparietal sulcus -synonym: "SBPS" BROAD ABBREVIATION [BIRNLEX:4026, NIFSTD:NeuroNames_abbrevSource] +synonym: "SBPS" BROAD OMO:0003000 [BIRNLEX:4026, NIFSTD:NeuroNames_abbrevSource] synonym: "splenial sulcus" EXACT [FMA:83777] synonym: "sulcus subparietalis" EXACT [BIRNLEX:4026] synonym: "suprasplenial sulcus" EXACT [FMA:83777] @@ -62221,7 +62221,7 @@ is_a: UBERON:0013118 ! sulcus of brain [Term] id: UBERON:0002909 name: posterior subcentral sulcus -synonym: "PSCS" BROAD ABBREVIATION [BIRNLEX:4027, NIFSTD:NeuroNames_abbrevSource] +synonym: "PSCS" BROAD OMO:0003000 [BIRNLEX:4027, NIFSTD:NeuroNames_abbrevSource] synonym: "sulcus subcentralis posterior" EXACT [BIRNLEX:4027] xref: BAMS:pscs xref: BIRNLEX:4027 @@ -62235,7 +62235,7 @@ id: UBERON:0002910 name: posterior ascending limb of lateral sulcus def: "One of two branches of the lateral fissure at its posterior terminus identified by dissection in the human. The other is the terminal descending limb of the lateral fissure ( Ono-1990 ). It is not found in the macaque ( Martin-2000 ), the rat ( Swanson-2004 ) or the mouse ( Hof-2000 )." [NeuroNames:104] synonym: "ascending terminal ramus of sylvian fissure" EXACT [] -synonym: "PALS" BROAD ABBREVIATION [BIRNLEX:4028, NIFSTD:NeuroNames_abbrevSource] +synonym: "PALS" BROAD OMO:0003000 [BIRNLEX:4028, NIFSTD:NeuroNames_abbrevSource] synonym: "posterior ascending limb of lateral fissure" EXACT [FMA:83761] synonym: "posterior ramus of lateral cerebral sulcus" EXACT [FMA:83761] synonym: "ramus posterior ascendens fissurae lateralis" EXACT [BIRNLEX:4028] @@ -62257,7 +62257,7 @@ name: parietal operculum def: "The parietal operculum, forming the superior bank of the sylvian fissure, as studied in the cat, contains the secondary somatosensory representation, 'S-II', and a second somatotopic representation (parietal ventral, or PV). Anatomically, primate S-II receives inputs from area 3 and area 1, and projects to PV and area 7. PV has projections to area 5 and premotor areas. [WP,unvetted]." [Wikipedia:Parietal_operculum] subset: uberon_slim synonym: "operculum parietale" EXACT LATIN [BIRNLEX:4029] -synonym: "PAO" BROAD ABBREVIATION [BIRNLEX:4029, NIFSTD:NeuroNames_abbrevSource] +synonym: "PAO" BROAD OMO:0003000 [BIRNLEX:4029, NIFSTD:NeuroNames_abbrevSource] xref: BAMS:pao xref: BAMS:PaOp xref: BIRNLEX:4029 @@ -62279,7 +62279,7 @@ def: "The marginal sulcus is the portion of the cingulate sulcus adjacent to the subset: uberon_slim synonym: "marginal branch of cingulate sulcus" EXACT [FMA:83773] synonym: "marginal ramus of cingulate sulcus" EXACT [FMA:83773] -synonym: "MS" BROAD ABBREVIATION [BIRNLEX:4030, NIFSTD:NeuroNames_abbrevSource] +synonym: "MS" BROAD OMO:0003000 [BIRNLEX:4030, NIFSTD:NeuroNames_abbrevSource] synonym: "pars marginalis sulci cinguli" RELATED LATIN [NeuroNames:98] synonym: "ramus marginalis sulci cingulati" EXACT [BIRNLEX:4030] synonym: "ramus marginalis sulci cinguli" EXACT LATIN [FMA:83773, FMA:TA] @@ -62303,7 +62303,7 @@ subset: uberon_slim synonym: "interparietal fissure" EXACT [FMA:83772] synonym: "intraparietal fissure" EXACT [FMA:83772] synonym: "intraparietal sulcus of Turner" RELATED [BTO:0003787] -synonym: "ITPS" BROAD ABBREVIATION [BIRNLEX:4031, NIFSTD:NeuroNames_abbrevSource] +synonym: "ITPS" BROAD OMO:0003000 [BIRNLEX:4031, NIFSTD:NeuroNames_abbrevSource] synonym: "sulcus interparietalis" EXACT [BIRNLEX:4031] synonym: "sulcus intraparietalis" RELATED LATIN [BTO:0003787, Wikipedia:Intraparietal_sulcus] synonym: "Turner sulcus" RELATED [BTO:0003787] @@ -62328,7 +62328,7 @@ property_value: depicted_by "http://upload.wikimedia.org/wikipedia/commons/2/2a/ [Term] id: UBERON:0002914 name: inferior postcentral sulcus -synonym: "IPCS" BROAD ABBREVIATION [BIRNLEX:4032, NIFSTD:NeuroNames_abbrevSource] +synonym: "IPCS" BROAD OMO:0003000 [BIRNLEX:4032, NIFSTD:NeuroNames_abbrevSource] synonym: "sulcus postcentralis inferior" EXACT [BIRNLEX:4032] xref: BAMS:ipcs xref: BAMS:poci @@ -62343,7 +62343,7 @@ id: UBERON:0002915 name: postcentral sulcus of parietal lobe def: "The postcentral sulcus of the parietal lobe lies parallel to, and behind, the central sulcus in the human brain. (A sulcus is one of the prominent grooves on the surface of the brain. ) The postcentral sulcus divides the postcentral gyrus from the remainder of the parietal lobe. [WP,unvetted]." [Wikipedia:Postcentral_sulcus] subset: uberon_slim -synonym: "POCS" BROAD ABBREVIATION [BIRNLEX:4033, NIFSTD:NeuroNames_abbrevSource] +synonym: "POCS" BROAD OMO:0003000 [BIRNLEX:4033, NIFSTD:NeuroNames_abbrevSource] synonym: "postcentral fissure of cerebral hemisphere" EXACT [FMA:83774] synonym: "postcentral fissure-1" EXACT [FMA:83774] synonym: "postcentral sulcus" EXACT [FMA:83774] @@ -62374,7 +62374,7 @@ subset: uberon_slim synonym: "central cerebral sulcus" EXACT [FMA:83752] synonym: "central fissure" EXACT [FMA:83752] synonym: "central sulcus of Rolando" EXACT [] -synonym: "CS" BROAD ABBREVIATION [BIRNLEX:4035, NIFSTD:NeuroNames_abbrevSource] +synonym: "CS" BROAD OMO:0003000 [BIRNLEX:4035, NIFSTD:NeuroNames_abbrevSource] synonym: "fissure of Rolando" EXACT [] synonym: "rolandic fissure" EXACT [BIRNLEX:4035] synonym: "sulcus centralis" EXACT [BIRNLEX:4035] @@ -62436,7 +62436,7 @@ relationship: part_of UBERON:0003023 {source="FMA"} ! pontine tegmentum [Term] id: UBERON:0002919 name: anterior parolfactory sulcus -synonym: "APS" BROAD ABBREVIATION [BIRNLEX:4039, NIFSTD:NeuroNames_abbrevSource] +synonym: "APS" BROAD OMO:0003000 [BIRNLEX:4039, NIFSTD:NeuroNames_abbrevSource] synonym: "paraolfactory sulci" EXACT PLURAL [BIRNLEX:4039] synonym: "paraolfactory sulcus" EXACT [FMA:83744] synonym: "sulcus parolfactorius anterior" EXACT [BIRNLEX:4039] @@ -62454,7 +62454,7 @@ id: UBERON:0002920 name: callosal sulcus def: "The callosal sulcus is a sulcus in the brain between the cingulate gyrus and corpus callosum, below the longitudinal cerebral fissure. [WP,unvetted]." [Wikipedia:Callosal_sulcus] subset: uberon_slim -synonym: "CAS" BROAD ABBREVIATION [BIRNLEX:4040, NIFSTD:NeuroNames_abbrevSource] +synonym: "CAS" BROAD OMO:0003000 [BIRNLEX:4040, NIFSTD:NeuroNames_abbrevSource] synonym: "sulcus corporis callosi" EXACT [BIRNLEX:4040] synonym: "sulcus corporis callosi" RELATED LATIN [Wikipedia:Callosal_sulcus] synonym: "sulcus of corpus callosum" EXACT [FMA:83743] @@ -62482,7 +62482,7 @@ synonym: "fissura longitudinalis cerebri" EXACT [BIRNLEX:4041] synonym: "fissura longitudinalis magna" EXACT [BIRNLEX:4041] synonym: "hemispheric sulcus" EXACT [FMA:83727] synonym: "interhemispheric fissure" EXACT [FMA:83727] -synonym: "LF" BROAD ABBREVIATION [BIRNLEX:4041, NIFSTD:NeuroNames_abbrevSource] +synonym: "LF" BROAD OMO:0003000 [BIRNLEX:4041, NIFSTD:NeuroNames_abbrevSource] synonym: "longitudinal cerebral fissure" EXACT [FMA:83727] synonym: "longitudinal fissure of hemisphere" EXACT [BIRNLEX:4041] synonym: "longitudinal fissure of the cerebrum" EXACT [BIRNLEX:4041] @@ -62508,7 +62508,7 @@ id: UBERON:0002922 name: olfactory trigone def: "A small triangular area in front of the anterior perforated substance. Its apex, directed forward, occupies the posterior part of the olfactory sulcus, and is brought into view by throwing back the olfactory tract (adapted from Wikipedia)." [BIRNLEX:4042] subset: uberon_slim -synonym: "OLT" BROAD ABBREVIATION [BIRNLEX:4042, NIFSTD:NeuroNames_abbrevSource] +synonym: "OLT" BROAD OMO:0003000 [BIRNLEX:4042, NIFSTD:NeuroNames_abbrevSource] synonym: "trigonum olfactorium" EXACT [BIRNLEX:4042] synonym: "trigonum olfactorium" RELATED LATIN [Wikipedia:Olfactory_trigone] xref: BAMS:olt @@ -62527,7 +62527,7 @@ property_value: depicted_by "http://upload.wikimedia.org/wikipedia/commons/4/4d/ [Term] id: UBERON:0002923 name: posterior parolfactory sulcus -synonym: "PPOS" BROAD ABBREVIATION [BIRNLEX:4043, NIFSTD:NeuroNames_abbrevSource] +synonym: "PPOS" BROAD OMO:0003000 [BIRNLEX:4043, NIFSTD:NeuroNames_abbrevSource] synonym: "sulcus parolfactorius posterior" RELATED LATIN [NeuroNames:38] xref: BAMS:ppos xref: BAMS:pps @@ -62551,7 +62551,7 @@ synonym: "cranial nerve zero" EXACT [Wikipedia:Terminal_nerve] synonym: "nervus terminalis" EXACT [ZFA:0001356] synonym: "terminalis" BROAD [ISBN:0471888893] synonym: "terminalis nerve" EXACT [ISBN:0471888893] -synonym: "TRN" BROAD ABBREVIATION [BIRNLEX:4044, NIFSTD:NeuroNames_abbrevSource] +synonym: "TRN" BROAD OMO:0003000 [BIRNLEX:4044, NIFSTD:NeuroNames_abbrevSource] xref: BAMS:tn xref: BAMS:trn xref: BIRNLEX:4044 @@ -62675,7 +62675,7 @@ subset: uberon_slim synonym: "corpus trapezoides" RELATED LATIN [NeuroNames:594] synonym: "corpus trapezoideum" RELATED LATIN [Wikipedia:Trapezoid_body] synonym: "trapezoid body (Treviranus)" RELATED [NeuroNames:594] -synonym: "TZ" BROAD ABBREVIATION [BIRNLEX:707, NIFSTD:NeuroNames_abbrevSource] +synonym: "TZ" BROAD OMO:0003000 [BIRNLEX:707, NIFSTD:NeuroNames_abbrevSource] xref: BAMS:TB xref: BAMS:tb xref: BAMS:tz @@ -62726,7 +62726,7 @@ id: UBERON:0002934 name: ventral oculomotor nucleus synonym: "nucleus nervi oculomotorii ventrolateralis" RELATED LATIN [NeuroNames:496] synonym: "nucleus nervi oculomotorii, pars ventralis" RELATED LATIN [NeuroNames:496] -synonym: "V3" BROAD ABBREVIATION [BIRNLEX:713, NIFSTD:NeuroNames_abbrevSource] +synonym: "V3" BROAD OMO:0003000 [BIRNLEX:713, NIFSTD:NeuroNames_abbrevSource] synonym: "ventral nucleus of oculomotor nuclear complex" EXACT [http://orcid.org/0000-0002-6601-2165] synonym: "ventral oculomotor cell column" EXACT [FMA:72422] xref: BIRNLEX:713 @@ -62751,7 +62751,7 @@ synonym: "nucleus thalamicus ventral anterior, pars magnocellularis" EXACT [BIRN synonym: "nucleus thalamicus ventralis anterior, pars magnocellularis" RELATED LATIN [NeuroNames:336] synonym: "nucleus ventralis anterior, pars magnocellularis" EXACT [BIRNLEX:716] synonym: "pars magnocellularis nuclei ventralis anterior thalami" EXACT LATIN [FMA:62192, FMA:TA] -synonym: "VAMC" BROAD ABBREVIATION [BIRNLEX:716, NIFSTD:NeuroNames_abbrevSource] +synonym: "VAMC" BROAD OMO:0003000 [BIRNLEX:716, NIFSTD:NeuroNames_abbrevSource] synonym: "ventral anterior nucleus, magnocellular part" EXACT [FMA:62192] synonym: "ventral anterior nucleus, pars magnocellularis" EXACT [FMA:62192] synonym: "ventral anterior thalamic nucleus, magnocellular part" EXACT [FMA:62192] @@ -62780,7 +62780,7 @@ synonym: "pars magnocellularis (ruber)" RELATED LATIN [NeuroNames:507] synonym: "pars magnocellularis nuclei rubri" EXACT LATIN [FMA:72431, FMA:TA] synonym: "red nucleus magnocellular part" RELATED [BAMS:RMC, BAMS:RNmc] synonym: "red nucleus, magnocellular part" EXACT [FMA:72431] -synonym: "RMC" BROAD ABBREVIATION [BIRNLEX:720, NIFSTD:NeuroNames_abbrevSource] +synonym: "RMC" BROAD OMO:0003000 [BIRNLEX:720, NIFSTD:NeuroNames_abbrevSource] xref: BAMS:RMC xref: BAMS:RNmc xref: BIRNLEX:720 @@ -62802,7 +62802,7 @@ synonym: "nucleus ventralis anterior, pars parvicellularis" EXACT [BIRNLEX:722] synonym: "nucleus ventralis anterior, pars parvocellularis" RELATED LATIN [NeuroNames:335] synonym: "parvicellular part of the ventral anterior nucleus" RELATED [NeuroNames:335] synonym: "parvicellular part of ventral anterior nucleus" EXACT [] -synonym: "VAPC" BROAD ABBREVIATION [BIRNLEX:722, NIFSTD:NeuroNames_abbrevSource] +synonym: "VAPC" BROAD OMO:0003000 [BIRNLEX:722, NIFSTD:NeuroNames_abbrevSource] synonym: "ventral anterior nucleus, pars parvicellularis" EXACT [FMA:62191] synonym: "ventral anterior thalamic nucleus, parvicellular part" EXACT [FMA:62191] synonym: "ventralis anterior (jones)" EXACT [] @@ -62828,7 +62828,7 @@ synonym: "parvocellular part of the red nucleus" RELATED [NeuroNames:506] synonym: "red nucleus parvicellular part" RELATED [BAMS:RNpc] synonym: "red nucleus, parvicellular part" RELATED [NeuroNames:506] synonym: "red nucleus, parvocellular part" EXACT [FMA:72430] -synonym: "RPC" BROAD ABBREVIATION [BIRNLEX:725, NIFSTD:NeuroNames_abbrevSource] +synonym: "RPC" BROAD OMO:0003000 [BIRNLEX:725, NIFSTD:NeuroNames_abbrevSource] xref: BAMS:RNpc xref: BAMS:RPC xref: BIRNLEX:725 @@ -62861,7 +62861,7 @@ synonym: "ventroposterior inferior nucleus" RELATED [BTO:0004374] synonym: "ventroposterior inferior thalamic" RELATED [BAMS:VPI] synonym: "ventroposterior nucleus" RELATED [BTO:0004373] synonym: "ventroposterior nucleus of thalamus" RELATED [BAMS:VP] -synonym: "VPN" RELATED ABBREVIATION [BTO:0004373] +synonym: "VPN" RELATED OMO:0003000 [BTO:0004373] xref: BAMS:VP xref: BAMS:VPI xref: BIRNLEX:728 @@ -62903,7 +62903,7 @@ id: UBERON:0002941 name: capsule of red nucleus synonym: "capsula nuclei rubris tegmenti" RELATED LATIN [NeuroNames:508] synonym: "capsule of the red nucleus" RELATED [NeuroNames:508] -synonym: "CR" BROAD ABBREVIATION [BIRNLEX:732, NIFSTD:NeuroNames_abbrevSource] +synonym: "CR" BROAD OMO:0003000 [BIRNLEX:732, NIFSTD:NeuroNames_abbrevSource] synonym: "nucleus ruber, capsula" RELATED LATIN [NeuroNames:508] synonym: "red nuclear capsule" EXACT [FMA:72450] xref: BAMS:cr @@ -62937,7 +62937,7 @@ synonym: "ventral posterolateral nucleus of the thalamus, principal part" RELATE synonym: "ventral posterolateral thalamic nucleus" EXACT [FMA:62200] synonym: "ventroposterior lateral thalamic nucleus" RELATED [BAMS:VPL] synonym: "ventroposterolateral nucleus of the thalamus" RELATED [NeuroNames:344] -synonym: "VPL" BROAD ABBREVIATION [BIRNLEX:737, NIFSTD:NeuroNames_abbrevSource] +synonym: "VPL" BROAD OMO:0003000 [BIRNLEX:737, NIFSTD:NeuroNames_abbrevSource] xref: BAMS:VPL xref: BIRNLEX:737 xref: DHBA:10424 @@ -63036,7 +63036,7 @@ synonym: "ventral posteromedial nucleus of the thalamus, principal part" RELATED synonym: "ventral posteromedial thalamic nucleus" EXACT [BIRNLEX:743] synonym: "ventroposterior medial thalamic nucleus" RELATED [BAMS:VPM] synonym: "ventroposteromedial nucleus of the thalamus" EXACT [BIRNLEX:743] -synonym: "VPM" BROAD ABBREVIATION [BIRNLEX:743, NIFSTD:NeuroNames_abbrevSource] +synonym: "VPM" BROAD OMO:0003000 [BIRNLEX:743, NIFSTD:NeuroNames_abbrevSource] xref: BAMS:Gus xref: BAMS:SL xref: BAMS:VPM @@ -63210,7 +63210,7 @@ def: "A relatively small region of the hypothalamus located inferior to the hypo comment: ). synonym: "area dorsalis hypothalami" RELATED LATIN [NeuroNames:430] synonym: "area hypothalamica dorsalis" RELATED LATIN [NeuroNames:430] -synonym: "DH" BROAD ABBREVIATION [BIRNLEX:777, NIFSTD:NeuroNames_abbrevSource] +synonym: "DH" BROAD OMO:0003000 [BIRNLEX:777, NIFSTD:NeuroNames_abbrevSource] synonym: "dorsal hypothalamic zone" EXACT [ZFA:0000347] synonym: "nucleus hypothalamicus dorsalis" RELATED LATIN [NeuroNames:430] xref: BAMS:DA @@ -63234,7 +63234,7 @@ name: rhomboidal nucleus synonym: "nucleus commissuralis rhomboidalis" RELATED [BTO:0002458] synonym: "nucleus rhomboidalis" RELATED [BTO:0002458] synonym: "nucleus rhomboidalis thalami" RELATED LATIN [NeuroNames:310] -synonym: "Rh" BROAD ABBREVIATION [BIRNLEX:778, NIFSTD:NeuroNames_abbrevSource] +synonym: "Rh" BROAD OMO:0003000 [BIRNLEX:778, NIFSTD:NeuroNames_abbrevSource] synonym: "rhomboid nucleus" EXACT [FMA:62154] synonym: "rhomboid nucleus (Cajal 1904)" RELATED [NeuroNames:310] synonym: "rhomboid nucleus of the thalamus" RELATED [NeuroNames:310] @@ -63293,7 +63293,7 @@ id: UBERON:0002957 name: caudal central oculomotor nucleus synonym: "caudal central nucleus" EXACT [FMA:72426] synonym: "caudal central nucleus of oculomotor nerve" EXACT [FMA:72426] -synonym: "CC3" BROAD ABBREVIATION [BIRNLEX:780, NIFSTD:NeuroNames_abbrevSource] +synonym: "CC3" BROAD OMO:0003000 [BIRNLEX:780, NIFSTD:NeuroNames_abbrevSource] synonym: "nucleus caudalis centralis oculomotorii" RELATED LATIN [NeuroNames:500] synonym: "nucleus centralis nervi oculomotorii" RELATED LATIN [NeuroNames:500] synonym: "oculomotor nerve central caudal nucleus" EXACT [] @@ -63331,7 +63331,7 @@ relationship: part_of UBERON:0003023 {source="FMA"} ! pontine tegmentum id: UBERON:0002959 name: subfascicular nucleus synonym: "nucleus subfascicularis" RELATED LATIN [NeuroNames:311] -synonym: "SF" BROAD ABBREVIATION [BIRNLEX:783, NIFSTD:NeuroNames_abbrevSource] +synonym: "SF" BROAD OMO:0003000 [BIRNLEX:783, NIFSTD:NeuroNames_abbrevSource] xref: BAMS:SF xref: BIRNLEX:783 xref: FMA:62155 @@ -63343,7 +63343,7 @@ relationship: part_of UBERON:0002705 {source="NIFSTD"} ! midline nuclear group [Term] id: UBERON:0002960 name: central oculomotor nucleus -synonym: "C3" BROAD ABBREVIATION [BIRNLEX:786, NIFSTD:NeuroNames_abbrevSource] +synonym: "C3" BROAD OMO:0003000 [BIRNLEX:786, NIFSTD:NeuroNames_abbrevSource] synonym: "central nucleus of perlia" EXACT [] synonym: "nucleus nervi oculomotorii centralis" RELATED LATIN [NeuroNames:499] synonym: "nucleus of perlia" EXACT [] @@ -63430,7 +63430,7 @@ relationship: part_of UBERON:0002573 {source="FMA"} ! pontine reticular formatio [Term] id: UBERON:0002964 name: dorsal oculomotor nucleus -synonym: "D3" BROAD ABBREVIATION [BIRNLEX:793, NIFSTD:NeuroNames_abbrevSource] +synonym: "D3" BROAD OMO:0003000 [BIRNLEX:793, NIFSTD:NeuroNames_abbrevSource] synonym: "dorsal nucleus of oculomotor nuclear complex" EXACT [http://orcid.org/0000-0002-6601-2165] synonym: "dorsal oculomotor cell column" EXACT [FMA:62442] synonym: "nucleus nervi oculomotorii, pars dorsalis" RELATED LATIN [NeuroNames:493] @@ -63449,7 +63449,7 @@ id: UBERON:0002965 name: rostral intralaminar nuclear group synonym: "anterior group of intralaminar nuclei" EXACT [DHBA:AILN] synonym: "nuclei intralaminares rostrales" EXACT [BIRNLEX:794] -synonym: "RIL" BROAD ABBREVIATION [BIRNLEX:794, NIFSTD:NeuroNames_abbrevSource] +synonym: "RIL" BROAD OMO:0003000 [BIRNLEX:794, NIFSTD:NeuroNames_abbrevSource] synonym: "rostral group of intralaminar nuclei" EXACT [HBA:ILr] synonym: "rostral intralaminar nuclear group" EXACT [FMA:62164] synonym: "rostral intralaminar nuclei" EXACT [FMA:62164] @@ -63562,7 +63562,7 @@ relationship: part_of UBERON:0001871 ! temporal lobe [Term] id: UBERON:0002970 name: intermediate oculomotor nucleus -synonym: "I3" BROAD ABBREVIATION [BIRNLEX:803, NIFSTD:NeuroNames_abbrevSource] +synonym: "I3" BROAD OMO:0003000 [BIRNLEX:803, NIFSTD:NeuroNames_abbrevSource] synonym: "intermediate nucleus of oculomotor nuclear complex" EXACT [http://orcid.org/0000-0002-6601-2165] synonym: "intermediate oculomotor cell column" EXACT [FMA:72420] synonym: "interoculomotor nucleus" RELATED [BAMS:I3] @@ -63587,7 +63587,7 @@ synonym: "peri-olivary nuclei" EXACT [FMA:72475] synonym: "peri-olivary nucleus" EXACT [] synonym: "periolivary nuclei" RELATED [BAMS:POR] synonym: "periolivary region" RELATED [BAMS:POR] -synonym: "POI" RELATED ABBREVIATION [DHBA:12464] +synonym: "POI" RELATED OMO:0003000 [DHBA:12464] synonym: "superior olivary complex periolivary region" RELATED [BAMS:POR] xref: BAMS:PeO xref: BAMS:POR @@ -63616,7 +63616,7 @@ synonym: "centromedian nucleus of thalamus" EXACT [FMA:62165] synonym: "centromedian thalamic nucleus" EXACT [FMA:62165] synonym: "centrum medianum" EXACT [BIRNLEX:805] synonym: "centrum medianum thalami" EXACT [BIRNLEX:805] -synonym: "CMn" BROAD ABBREVIATION [BIRNLEX:805, NIFSTD:NeuroNames_abbrevSource] +synonym: "CMn" BROAD OMO:0003000 [BIRNLEX:805, NIFSTD:NeuroNames_abbrevSource] synonym: "noyau centre median of Luys" EXACT [] synonym: "nucleus centralis centralis" EXACT [BIRNLEX:805] synonym: "nucleus centralis thalami (Hassler)" EXACT [BIRNLEX:805] @@ -63708,7 +63708,7 @@ property_value: taxon_notes "Compare with ZFA:0000636 - cerebellar crest, which [Term] id: UBERON:0002975 name: medial oculomotor nucleus -synonym: "M3" BROAD ABBREVIATION [BIRNLEX:813, NIFSTD:NeuroNames_abbrevSource] +synonym: "M3" BROAD OMO:0003000 [BIRNLEX:813, NIFSTD:NeuroNames_abbrevSource] synonym: "medial nucleus of oculomotor nuclear complex" EXACT [http://orcid.org/0000-0002-6601-2165] synonym: "medial oculomotor cell column" EXACT [FMA:72421] synonym: "nucleus nervi oculomotorii, pars medialis" RELATED LATIN [NeuroNames:495] @@ -63772,7 +63772,7 @@ synonym: "ventral anterior nucleus, pars densicellularis" EXACT [FMA:62193] synonym: "ventral lateral anterior nucleus" EXACT [FMA:62193] synonym: "ventral lateral nucleus, oral part" EXACT [FMA:62193] synonym: "ventral lateral thalamic nucleus, oral part" EXACT [FMA:62193] -synonym: "VLO" BROAD ABBREVIATION [BIRNLEX:817, NIFSTD:NeuroNames_abbrevSource] +synonym: "VLO" BROAD OMO:0003000 [BIRNLEX:817, NIFSTD:NeuroNames_abbrevSource] xref: BAMS:VLO xref: BIRNLEX:817 xref: FMA:62193 @@ -63847,7 +63847,7 @@ synonym: "nuclei pulvinares" EXACT LATIN [FMA:62178, FMA:TA] synonym: "nucleus pulvinaris" RELATED LATIN [NeuroNames:328] synonym: "nucleus pulvinaris thalami" RELATED LATIN [NeuroNames:328] synonym: "posterior nucleus (P)" RELATED [NeuroNames:328] -synonym: "Pul" BROAD ABBREVIATION [BIRNLEX:824, NIFSTD:NeuroNames_abbrevSource] +synonym: "Pul" BROAD OMO:0003000 [BIRNLEX:824, NIFSTD:NeuroNames_abbrevSource] synonym: "pulvinar" EXACT [FMA:62178] synonym: "pulvinar nuclei" EXACT [FMA:62178] synonym: "pulvinar thalami" EXACT [BIRNLEX:824] @@ -63875,7 +63875,7 @@ property_value: depicted_by "http://upload.wikimedia.org/wikipedia/commons/b/b7/ id: UBERON:0002982 name: inferior pulvinar nucleus def: "One of four subdivisions recognized in the primate pulvinar based on initially on topography, located ventrally between the medial and lateral geniculate bodies (Carpenter, A core text of neuroanatomy, 3rd ed., 1985, pg 238)." [BIRNLEX:830] -synonym: "IPul" BROAD ABBREVIATION [BIRNLEX:830, NIFSTD:NeuroNames_abbrevSource] +synonym: "IPul" BROAD OMO:0003000 [BIRNLEX:830, NIFSTD:NeuroNames_abbrevSource] synonym: "nucleus pulvinaris inferior" EXACT [BIRNLEX:830] synonym: "nucleus pulvinaris inferior thalami" EXACT [BIRNLEX:830] synonym: "nucleus pulvinaris thalami, pars inferior" EXACT [BIRNLEX:830] @@ -63901,7 +63901,7 @@ synonym: "lateral posterior nucleus of thalamus" EXACT [FMA:62177] synonym: "lateral posterior nucleus of the thalamus" EXACT [BIRNLEX:835] synonym: "lateral posterior thalamic nucleus" EXACT [FMA:62177] synonym: "laterodorsal nucleus, caudal part" EXACT [FMA:62177] -synonym: "LP" BROAD ABBREVIATION [BIRNLEX:835, NIFSTD:NeuroNames_abbrevSource] +synonym: "LP" BROAD OMO:0003000 [BIRNLEX:835, NIFSTD:NeuroNames_abbrevSource] synonym: "nucleus dorso-caudalis" EXACT [BIRNLEX:835] synonym: "nucleus dorsocaudalis (Hassler)" EXACT [BIRNLEX:835] synonym: "nucleus lateralis posterior" EXACT [BIRNLEX:835] @@ -63942,7 +63942,7 @@ synonym: "laterodorsal nucleus of the thalamus" RELATED [NeuroNames:326] synonym: "laterodorsal nucleus thalamic nucleus" EXACT [BIRNLEX:838] synonym: "laterodorsal nucleus, superficial part" EXACT [FMA:62176] synonym: "laterodorsal thalamic nucleus" EXACT [FMA:62176] -synonym: "LD" BROAD ABBREVIATION [BIRNLEX:838, NIFSTD:NeuroNames_abbrevSource] +synonym: "LD" BROAD OMO:0003000 [BIRNLEX:838, NIFSTD:NeuroNames_abbrevSource] synonym: "nucleus dorsalis lateralis thalami" EXACT LATIN [FMA:62176, FMA:TA] synonym: "nucleus dorsalis superficialis (Hassler)" EXACT [BIRNLEX:838] synonym: "nucleus dorsolateralis thalami" EXACT [BIRNLEX:838] @@ -63979,7 +63979,7 @@ synonym: "medial geniculate complex, ventral part" EXACT [FMA:62217] synonym: "medial geniculate nucleus ventral part" RELATED [BAMS:MGv] synonym: "medial geniculate nucleus, ventral part" EXACT [FMA:62217] synonym: "medial nucleus of medial geniculate complex" EXACT [BIRNLEX:845] -synonym: "MGV" BROAD ABBREVIATION [BIRNLEX:845, NIFSTD:NeuroNames_abbrevSource] +synonym: "MGV" BROAD OMO:0003000 [BIRNLEX:845, NIFSTD:NeuroNames_abbrevSource] synonym: "nucleus corporis geniculati medialis, pars ventralis" EXACT [BIRNLEX:845] synonym: "nucleus geniculatus medialis fasciculosis (Hassler)" EXACT LATIN [FMA:62217, FMA:TA] synonym: "nucleus geniculatus medialis fasciculosus (Hassler)" EXACT [BIRNLEX:845] @@ -63989,7 +63989,7 @@ synonym: "ventral nucleus" RELATED [NeuroNames:357] synonym: "ventral nucleus of medial geniculate complex" EXACT [FMA:62217] synonym: "ventral nucleus of the medial geniculate body" RELATED [NeuroNames:357] synonym: "ventral principal nucleus of medial geniculate body" EXACT [FMA:62217] -synonym: "VMG" BROAD ABBREVIATION [BIRNLEX:845, NIFSTD:NeuroNames_abbrevSource] +synonym: "VMG" BROAD OMO:0003000 [BIRNLEX:845, NIFSTD:NeuroNames_abbrevSource] xref: BAMS:MGV xref: BAMS:MGv xref: BAMS:VMG @@ -64092,7 +64092,7 @@ def: "Part of mammillothalamic tract contained within the hypothalamus." [BIRNLE subset: pheno_slim synonym: "fasciculus mamillothalamicus (hypothalami)" RELATED LATIN [NeuroNames:424] synonym: "mammillothalamic tract of the hypothalamus" RELATED [NeuroNames:424] -synonym: "MTHH" BROAD ABBREVIATION [BIRNLEX:855, NIFSTD:NeuroNames_abbrevSource] +synonym: "MTHH" BROAD OMO:0003000 [BIRNLEX:855, NIFSTD:NeuroNames_abbrevSource] xref: BAMS:mthh xref: BIRNLEX:855 xref: EMAPA:37904 {source="MA:th"} @@ -64116,7 +64116,7 @@ synonym: "commissure y" EXACT [FMA:62056] synonym: "decussation supramamilaris" EXACT LATIN [FMA:62056, FMA:TA] synonym: "decussation supramamillaris" RELATED LATIN [NeuroNames:421] synonym: "postmammillary decussation" EXACT [FMA:62056] -synonym: "SUMX" BROAD ABBREVIATION [BIRNLEX:859, NIFSTD:NeuroNames_abbrevSource] +synonym: "SUMX" BROAD OMO:0003000 [BIRNLEX:859, NIFSTD:NeuroNames_abbrevSource] synonym: "supramammillary decussation" EXACT [FMA:62056] xref: BAMS:smd xref: BAMS:sumx @@ -64142,7 +64142,7 @@ synonym: "parataenial nucleus" EXACT [FMA:62151] synonym: "paratenial nucleus of thalamus" RELATED [BTO:0002457] synonym: "paratenial nucleus of the thalamus" RELATED [NeuroNames:307] synonym: "paratenial thalamic nucleus" EXACT [FMA:62151] -synonym: "PT" BROAD ABBREVIATION [BIRNLEX:860, NIFSTD:NeuroNames_abbrevSource] +synonym: "PT" BROAD OMO:0003000 [BIRNLEX:860, NIFSTD:NeuroNames_abbrevSource] xref: BAMS:PT xref: BIRNLEX:860 xref: BTO:0002457 @@ -64400,7 +64400,7 @@ id: UBERON:0003005 name: dorsal longitudinal fasciculus of midbrain def: "Part of dorsal longitudinal fasciculus located in the midbrain tegmentum." [BIRNLEX:893] synonym: "bundle of Schutz of midbrain" EXACT [OBOL:automatic] -synonym: "DLFMB" BROAD ABBREVIATION [BIRNLEX:893, NIFSTD:NeuroNames_abbrevSource] +synonym: "DLFMB" BROAD OMO:0003000 [BIRNLEX:893, NIFSTD:NeuroNames_abbrevSource] synonym: "dorsal longitudinal fasciculus of the midbrain" RELATED [NeuroNames:525] synonym: "fasciculus longitudinalis dorsalis (mesencephali)" RELATED LATIN [NeuroNames:525] synonym: "fasciculus of Schutz of midbrain" EXACT [OBOL:automatic] @@ -64465,7 +64465,7 @@ relationship: part_of UBERON:0003023 {source="FMA"} ! pontine tegmentum id: UBERON:0003008 name: dorsal longitudinal fasciculus of hypothalamus def: "Part of dorsal longitudinal fasciculus located within the hypothalamus." [BIRNLEX:898] -synonym: "DLFH" BROAD ABBREVIATION [BIRNLEX:898, NIFSTD:NeuroNames_abbrevSource] +synonym: "DLFH" BROAD OMO:0003000 [BIRNLEX:898, NIFSTD:NeuroNames_abbrevSource] synonym: "dorsal longitudinal fasciculus of the hypothalamus" RELATED [NeuroNames:432] synonym: "fasciculus longitudinalis dorsalis (hypothalami)" RELATED LATIN [NeuroNames:432] xref: BAMS:dlfh @@ -64490,7 +64490,7 @@ synonym: "decussationes tegmentales" RELATED LATIN [NeuroNames:523] synonym: "decussationes tegmenti" RELATED LATIN [NeuroNames:523] synonym: "dorsal fountain decussation" EXACT [FMA:72451] synonym: "dorsal tegmental decussation (Meynert)" RELATED [NeuroNames:523] -synonym: "DTGX" BROAD ABBREVIATION [BIRNLEX:901, NIFSTD:NeuroNames_abbrevSource] +synonym: "DTGX" BROAD OMO:0003000 [BIRNLEX:901, NIFSTD:NeuroNames_abbrevSource] synonym: "fountain decussation of Meynert" EXACT [] synonym: "Meynert's decussation" EXACT [FMA:72451] synonym: "posterior tegmental decussation" EXACT [FMA:72451] @@ -64514,7 +64514,7 @@ synonym: "fussschleife" EXACT LATIN [FMA:72459, FMA:TA] synonym: "lateral pontine bundle" EXACT [FMA:72459] synonym: "laterale haubenfussschleife" EXACT [] synonym: "laterale pontine buendel" EXACT [] -synonym: "LPL" BROAD ABBREVIATION [BIRNLEX:902, NIFSTD:NeuroNames_abbrevSource] +synonym: "LPL" BROAD OMO:0003000 [BIRNLEX:902, NIFSTD:NeuroNames_abbrevSource] synonym: "pes lemnisci profundus" RELATED LATIN [NeuroNames:531] synonym: "pes lemniscus lateralis" RELATED LATIN [NeuroNames:531] synonym: "pes lemniscus profond" EXACT LATIN [FMA:72459, FMA:TA] @@ -64642,7 +64642,7 @@ def: "The posterior fibers of the fornix, which continue through the hypothalamu synonym: "columna posterior fornicis" RELATED LATIN [NeuroNames:431] synonym: "fornix (entering Corpus mamillare)" EXACT LATIN [FMA:62062, FMA:TA] synonym: "fornix postcommissuralis" RELATED LATIN [NeuroNames:431] -synonym: "POFX" BROAD ABBREVIATION [BIRNLEX:914, NIFSTD:NeuroNames_abbrevSource] +synonym: "POFX" BROAD OMO:0003000 [BIRNLEX:914, NIFSTD:NeuroNames_abbrevSource] synonym: "postcommissural fornix" EXACT [FMA:62062] xref: BAMS:fxpo xref: BAMS:pofx @@ -64709,7 +64709,7 @@ synonym: "ventral posteromedial thalamic nucleus, parvicellular part" EXACT [FMA synonym: "ventroposterior medial thalamic nucleus, parvocellular part" RELATED [BAMS:VPMPC] synonym: "ventroposteromedial nucleus of the thalamus parvicellular part" RELATED [BAMS:VPMpc] synonym: "ventroposteromedial nucleus of the thalamus, parvicellular part" EXACT [BIRNLEX:917] -synonym: "VPMPC" BROAD ABBREVIATION [BIRNLEX:917, NIFSTD:NeuroNames_abbrevSource] +synonym: "VPMPC" BROAD OMO:0003000 [BIRNLEX:917, NIFSTD:NeuroNames_abbrevSource] xref: BAMS:Gus xref: BAMS:VPMPC xref: BAMS:VPMpc @@ -64737,7 +64737,7 @@ synonym: "ventral part of ventral lateral posterior nucleus (jones)" EXACT [] synonym: "ventral posterolateral nucleus, oral part" EXACT [FMA:62205] synonym: "ventral posterolateral thalamic nucleus, oral part" EXACT [FMA:62205] synonym: "ventrointermedius nucleus" RELATED [BAMS:VIM] -synonym: "VPLO" BROAD ABBREVIATION [BIRNLEX:918, NIFSTD:NeuroNames_abbrevSource] +synonym: "VPLO" BROAD OMO:0003000 [BIRNLEX:918, NIFSTD:NeuroNames_abbrevSource] xref: BAMS:VIM xref: BAMS:VPLO xref: BIRNLEX:918 @@ -64841,7 +64841,7 @@ synonym: "nucleus ventralis posteromedialis, pars principalis" RELATED LATIN [Ne synonym: "nucleus ventralis posteromedialis, pars prinicipalis" EXACT [BIRNLEX:927] synonym: "principal part of the ventral posteromedial nucleus" RELATED [NeuroNames:348] synonym: "ventral posteromedial nucleus, principal part" RELATED [NeuroNames:348] -synonym: "VPMPr" BROAD ABBREVIATION [BIRNLEX:927, NIFSTD:NeuroNames_abbrevSource] +synonym: "VPMPr" BROAD OMO:0003000 [BIRNLEX:927, NIFSTD:NeuroNames_abbrevSource] xref: BAMS:VPMPr xref: BIRNLEX:927 xref: FMA:62208 @@ -64886,7 +64886,7 @@ property_value: depicted_by "http://upload.wikimedia.org/wikipedia/commons/2/29/ [Term] id: UBERON:0003026 name: limitans nucleus -synonym: "Lim" BROAD ABBREVIATION [BIRNLEX:931, NIFSTD:NeuroNames_abbrevSource] +synonym: "Lim" BROAD OMO:0003000 [BIRNLEX:931, NIFSTD:NeuroNames_abbrevSource] synonym: "limitans thalamic nucleus" EXACT [BIRNLEX:931] synonym: "nucleus limitans" EXACT [BIRNLEX:931] synonym: "nucleus limitans opticus (Hassler)" EXACT [BIRNLEX:931] @@ -64999,7 +64999,7 @@ synonym: "caudal thalamic nucleus" RELATED [TAO:0000325] synonym: "nucleus posterior thalami" EXACT [BIRNLEX:939] synonym: "nucleus thalami posterior" EXACT LATIN [FMA:62221, FMA:TA] synonym: "posterior nucleus of the thalamus" RELATED [NeuroNames:362] -synonym: "PTh" BROAD ABBREVIATION [BIRNLEX:939, NIFSTD:NeuroNames_abbrevSource] +synonym: "PTh" BROAD OMO:0003000 [BIRNLEX:939, NIFSTD:NeuroNames_abbrevSource] xref: BAMS:PTh xref: BIRNLEX:939 xref: BM:Die-Th-Po @@ -65023,7 +65023,7 @@ def: "Thalamic nucleus separated from the ventromedial part of the mediodorsal n synonym: "gelatinosus thalamic nucleus" EXACT [FMA:62223] synonym: "nucleus submedialis thalami" EXACT LATIN [FMA:62223, FMA:TA] synonym: "nucleus submedius thalami" EXACT [BIRNLEX:946] -synonym: "SM" BROAD ABBREVIATION [BIRNLEX:946, NIFSTD:NeuroNames_abbrevSource] +synonym: "SM" BROAD OMO:0003000 [BIRNLEX:946, NIFSTD:NeuroNames_abbrevSource] synonym: "submedial nucleus" EXACT [FMA:62223] synonym: "submedial nucleus of thalamus" EXACT [FMA:62223] synonym: "submedial nucleus of the thalamus" RELATED [NeuroNames:364] @@ -65048,7 +65048,7 @@ relationship: part_of UBERON:0002709 {source="FMA"} ! posterior nuclear complex id: UBERON:0003033 name: suprageniculate nucleus of thalamus synonym: "nucleus suprageniculatus" EXACT [BIRNLEX:953] -synonym: "SG" BROAD ABBREVIATION [BIRNLEX:953, NIFSTD:NeuroNames_abbrevSource] +synonym: "SG" BROAD OMO:0003000 [BIRNLEX:953, NIFSTD:NeuroNames_abbrevSource] synonym: "suprageniculate nucleus" EXACT [FMA:62222] synonym: "suprageniculate thalamic nucleus" EXACT [FMA:62222] xref: BAMS:SGN @@ -65070,7 +65070,7 @@ relationship: mutually_spatially_disjoint_with UBERON:0002983 {source="ABA"} ! l [Term] id: UBERON:0003034 name: central dorsal nucleus of thalamus -synonym: "CD" BROAD ABBREVIATION [BIRNLEX:956, NIFSTD:NeuroNames_abbrevSource] +synonym: "CD" BROAD OMO:0003000 [BIRNLEX:956, NIFSTD:NeuroNames_abbrevSource] synonym: "central dorsal nucleus" EXACT [FMA:62169, http://uri.neuinfo.org/nif/nifstd/birnlex] synonym: "central dorsal nucleus of thalamus" EXACT [DHBA:13331] synonym: "circular nucleus" BROAD [NeuroNames:1853] @@ -65103,7 +65103,7 @@ synonym: "central lateral nucleus of thalamus" EXACT [FMA:62170] synonym: "central lateral nucleus of the thalamus" RELATED [NeuroNames:320] synonym: "central lateral thalamic nucleus" EXACT [FMA:62170] synonym: "centrolateral thalamic nucleus" EXACT [FMA:62170] -synonym: "CL" BROAD ABBREVIATION [BIRNLEX:961, NIFSTD:NeuroNames_abbrevSource] +synonym: "CL" BROAD OMO:0003000 [BIRNLEX:961, NIFSTD:NeuroNames_abbrevSource] synonym: "nucleus centralis lateralis of thalamus" EXACT [BIRNLEX:961] synonym: "nucleus centralis lateralis thalami" EXACT [BIRNLEX:961] xref: BAMS:CL @@ -65214,7 +65214,7 @@ synonym: "central gray of the midbrain" RELATED [NeuroNames:510] synonym: "central gray substance of the midbrain" RELATED [NeuroNames:510] synonym: "central grey" RELATED [MA:0000209] synonym: "central grey substance of midbrain" RELATED [NeuroNames:510] -synonym: "CGMB" BROAD ABBREVIATION [BIRNLEX:973, NIFSTD:NeuroNames_abbrevSource] +synonym: "CGMB" BROAD OMO:0003000 [BIRNLEX:973, NIFSTD:NeuroNames_abbrevSource] synonym: "griseum centrale" BROAD [BIRNLEX:973] synonym: "griseum centrale mesencephali" RELATED LATIN [NeuroNames:510] synonym: "griseum periventriculare mesencephali" RELATED LATIN [NeuroNames:510] @@ -66336,7 +66336,7 @@ subset: uberon_slim synonym: "lateral mesoderm" EXACT [GO:0048368] synonym: "lateral plate" RELATED [] synonym: "lateral plate mesenchyme" RELATED [EHDAA2:0000919] -synonym: "LPM" EXACT ABBREVIATION [ZFA:0000121] +synonym: "LPM" EXACT OMO:0003000 [ZFA:0000121] synonym: "mesoderma laminae lateralis" RELATED LATIN [Wikipedia:Lateral_plate_mesoderm] xref: AAO:0010574 xref: EHDAA2:0000919 @@ -66409,7 +66409,7 @@ name: trunk neural crest def: "Trunk portion of the neural crest. The trunk neural crest lies between the vagal and sacral neural crest and gives rise to two groups of cells. One group migrates dorsolateral and populates the skin, forming pigment cells and the other migrates ventrolateral through the anterior sclerotome to become the epinephrine-producing cells of the adrenal gland and the neurons of the sympathetic nervous system. Some cells remain in the sclerotome to form the dorsal root ganglia [Wikipedia]." [ISBN:0815318960, Wikipedia:Trunk_neural_crest] subset: efo_slim subset: uberon_slim -synonym: "TNC" EXACT ABBREVIATION [XAO:0000319] +synonym: "TNC" EXACT OMO:0003000 [XAO:0000319] synonym: "trunk crest" RELATED [] xref: AAO:0010582 xref: EFO:0003605 @@ -66779,7 +66779,7 @@ subset: efo_slim subset: uberon_slim subset: vertebrate_core synonym: "cephalic neural crest" EXACT [EMAPA:16091] -synonym: "CNC" EXACT ABBREVIATION [XAO:0001001] +synonym: "CNC" EXACT OMO:0003000 [XAO:0001001] synonym: "cranial NCC population" EXACT [] synonym: "crista neuralis cranialis" RELATED LATIN [Wikipedia:Cranial_neural_crest] synonym: "head crest" RELATED [] @@ -68486,7 +68486,7 @@ synonym: "pars nervosa of posterior lobe of pituitary gland" EXACT [] synonym: "pars nervosa pituitary gland" EXACT [BIRNLEX:941] synonym: "pars posterior" EXACT [MA:0000860] synonym: "pars posterior of hypophysis" EXACT LATIN [FMA:74636, FMA:TA] -synonym: "PNHP" BROAD ABBREVIATION [BIRNLEX:941, NIFSTD:NeuroNames_abbrevSource] +synonym: "PNHP" BROAD OMO:0003000 [BIRNLEX:941, NIFSTD:NeuroNames_abbrevSource] synonym: "posterior lobe" BROAD [BTO:0000561] synonym: "posterior lobe of neurohypophysis" EXACT [FMA:74636] synonym: "posterior lobe-3" EXACT [] @@ -80746,15 +80746,15 @@ id: UBERON:0004023 name: ganglionic eminence def: "The transient proliferative population of neurons that expands exponentially during late prenatal development; it is a continuous germinal zone distinct from the ventricular zone that surrounds the brain ventricles[MP]." [MP:0004274] subset: pheno_slim -synonym: "embryonic GE" BROAD ABBREVIATION [] +synonym: "embryonic GE" BROAD OMO:0003000 [] synonym: "embryonic subventricular zone" EXACT [MP:0004274] -synonym: "embryonic SVZ" BROAD ABBREVIATION [] +synonym: "embryonic SVZ" BROAD OMO:0003000 [] synonym: "embryonic/fetal subventricular zone" EXACT [] synonym: "fetal subventricular zone" EXACT [] -synonym: "GE" BROAD ABBREVIATION [] +synonym: "GE" BROAD OMO:0003000 [] synonym: "subependymal layer" EXACT [MP:0004274] synonym: "subventricular zone" BROAD [DHBA:SZ] -synonym: "SVZ" BROAD ABBREVIATION [MP:0004274] +synonym: "SVZ" BROAD OMO:0003000 [MP:0004274] xref: DHBA:10549 xref: EMAPA:32665 xref: PBA:128012818 @@ -80769,7 +80769,7 @@ id: UBERON:0004024 name: medial ganglionic eminence def: "A distinct elevation of a transient proliferating cell mass of the fetal subventricular zone; this mass contributes most of its cells to the neocortex; however, hippocampal neurons, thalamus, septum and olfactory bulb neurons are also partly derived from the MGE." [MP:0004276] subset: pheno_slim -synonym: "MGE" BROAD ABBREVIATION [PMID:23375746] +synonym: "MGE" BROAD OMO:0003000 [PMID:23375746] xref: DHBA:10550 xref: EMAPA:37471 {source="MA:th"} xref: PBA:128012834 @@ -80783,7 +80783,7 @@ id: UBERON:0004025 name: lateral ganglionic eminence def: "A distinct elevation of a transient proliferating cell mass of the fetal subventricular zone; this mass contributes most of its cells to the striatum; however, neocortex, thalamus, septum and olfactory bulb neurons are also partly derived from the LGE." [MP:0004277] subset: pheno_slim -synonym: "LGE" BROAD ABBREVIATION [PMID:23375746] +synonym: "LGE" BROAD OMO:0003000 [PMID:23375746] xref: DHBA:10551 xref: EMAPA:37470 {source="MA:th"} xref: PBA:128012822 @@ -80902,7 +80902,7 @@ name: cortical subplate def: "The transient outer neural tube region that contains the first generated post-mitotic neurons that receive synaptic input from thalamic axons and in turn project axons to the developing cortical plate." [https://github.com/obophenotype/mouse-anatomy-ontology/issues/1, MP:0008440, Wikipedia:Subplate] subset: pheno_slim synonym: "cerebral cortex subplate" EXACT [EMAPA:32833] -synonym: "SP" BROAD ABBREVIATION [BRAINSPAN:BRAINSPAN] +synonym: "SP" BROAD OMO:0003000 [BRAINSPAN:BRAINSPAN] synonym: "subplate" EXACT [] synonym: "subplate zone" EXACT [DHBA:10522] xref: DHBA:10522 @@ -80953,7 +80953,7 @@ subset: pheno_slim synonym: "cerebral cortex mantle layer" RELATED [EMAPA:17545] synonym: "cerebral cortex mantle zone" RELATED [] synonym: "cortical mantle layer" RELATED [] -synonym: "IZ" BROAD ABBREVIATION [BRAINSPAN:BRAINSPAN] +synonym: "IZ" BROAD OMO:0003000 [BRAINSPAN:BRAINSPAN] xref: EMAPA:17545 xref: EMAPA:32712 is_a: UBERON:0014950 ! layer of developing cerebral cortex @@ -82584,10 +82584,10 @@ property_value: homology_notes "(In vertebrates) The embryonic mesoderm is the s id: UBERON:0004140 name: primary heart field def: "A specific region of the lateral mesoderm that will form the primary beating heart tube. In mammals the primary heart field gives rise to the left ventricle." [GO:0003138, GOC:mtg_heart, GOC:rl] -synonym: "FHF" RELATED ABBREVIATION [XAO:0004185] +synonym: "FHF" RELATED OMO:0003000 [XAO:0004185] synonym: "first heart field" EXACT [XAO:0004185] synonym: "heart field" RELATED [XAO:0004185] -synonym: "PHF" RELATED ABBREVIATION [XAO:0004185] +synonym: "PHF" RELATED OMO:0003000 [XAO:0004185] synonym: "primary heart field" EXACT [PMID:17276708, XAO:0004185] xref: XAO:0004185 is_a: UBERON:0007688 ! anlage @@ -82652,7 +82652,7 @@ id: UBERON:0004146 name: His-Purkinje system def: "The His-Purkinje system receives signals from the AV node and is composed of the fibers that regulate cardiac muscle contraction in the ventricles." [GO:0003164, https://github.com/geneontology/go-ontology/issues/12451] synonym: "His-Purkinji network" EXACT [] -synonym: "HPS" EXACT ABBREVIATION [] +synonym: "HPS" EXACT OMO:0003000 [] synonym: "VCS" EXACT [] synonym: "ventricular conduction system" EXACT [] is_a: UBERON:0010131 {source="cjm"} ! conducting tissue of heart @@ -83332,7 +83332,7 @@ id: UBERON:0004198 name: comma-shaped body def: "The comma-shaped body is the precursor structure to the S-shaped body that contributes to the morphogenesis of the nephron." [GO:0072049] subset: pheno_slim -synonym: "CSB" EXACT ABBREVIATION [] +synonym: "CSB" EXACT OMO:0003000 [] xref: EMAPA:27681 xref: ZFA:0005588 is_a: UBERON:0005423 ! developing anatomical structure @@ -83344,7 +83344,7 @@ id: UBERON:0004199 name: S-shaped body def: "The S-shaped body is the successor of the comma-shaped body that contributes to the morphogenesis of the nephron." [GO:0072050] subset: pheno_slim -synonym: "SSB" EXACT ABBREVIATION [] +synonym: "SSB" EXACT OMO:0003000 [] synonym: "stage II nephron" EXACT [http://www.gudmap.org/Organ_Summaries/Metanephros/Renal_vesicle.html] xref: EMAPA:27756 xref: ZFA:0005589 @@ -86175,7 +86175,7 @@ synonym: "branchial aortic arches" EXACT PLURAL [ZFIN:ZDB-PUB-080512-6] synonym: "branchial aortic arches" RELATED PLURAL [ZFA:0005004, ZFIN:ZDB-PUB-080512-6] synonym: "branchial arch artery" EXACT [EMAPA:16684] synonym: "embryonic aortic arch artery" EXACT [EMAPA:16684, MP:0002672] -synonym: "PAA" EXACT ABBREVIATION [MP:0002672] +synonym: "PAA" EXACT OMO:0003000 [MP:0002672] synonym: "pharyngeal arch arteries" RELATED PLURAL [] synonym: "pharyngeal arch artery" EXACT [MP:0002672] synonym: "pharyngeal arch artery" RELATED [VHOG:0000122] @@ -88614,7 +88614,7 @@ synonym: "gastroesophageal sphincter" EXACT [FMA:14915] synonym: "gastroesophageal sphincter" RELATED [Wikipedia:Cardia] synonym: "gastroesophageal sphincter muscle" EXACT [] synonym: "inferior esophageal sphincter" EXACT [FMA:14915] -synonym: "LES" RELATED ABBREVIATION [Wikipedia:Cardia] +synonym: "LES" RELATED OMO:0003000 [Wikipedia:Cardia] synonym: "lower esophageal sphincter" RELATED [MA:0002951, Wikipedia:Cardia] xref: EMAPA:18267 xref: FMA:14915 @@ -91017,7 +91017,7 @@ def: "Brodmann area 29, also known as granular retrolimbic area 29 or granular r synonym: "area 29 of Brodmann" EXACT [FMA:68626] synonym: "area 29 of Brodmann-1909" EXACT [BIRNLEX:1763] synonym: "area retrolimbica granularis" EXACT [BIRNLEX:1763] -synonym: "B09-29" BROAD ABBREVIATION [BIRNLEX:1763, NIFSTD:SumsDB_abbrevSource] +synonym: "B09-29" BROAD OMO:0003000 [BIRNLEX:1763, NIFSTD:SumsDB_abbrevSource] synonym: "B09-29" EXACT [BIRNLEX:1763] synonym: "BA29" RELATED [FMA:68626] synonym: "Brodmann (1909) area 29" EXACT [BIRNLEX:1763] @@ -91042,7 +91042,7 @@ synonym: "area 26 of Brodmann" EXACT [FMA:68623] synonym: "area 26 of Brodmann (guenon)" RELATED [NeuroNames:1031] synonym: "area 26 of Brodmann-1909" EXACT [BIRNLEX:1757] synonym: "area ectosplenialis" EXACT [BIRNLEX:1757] -synonym: "B09-26" BROAD ABBREVIATION [BIRNLEX:1757, NIFSTD:SumsDB_abbrevSource] +synonym: "B09-26" BROAD OMO:0003000 [BIRNLEX:1757, NIFSTD:SumsDB_abbrevSource] synonym: "B09-26" EXACT [BIRNLEX:1757] synonym: "BA26" RELATED [FMA:68623] synonym: "Brodmann (1909) area 26" EXACT [BIRNLEX:1757] @@ -94299,13 +94299,13 @@ synonym: "postnatal subependymal layer" RELATED [] synonym: "postnatal subependymal plate" RELATED [] synonym: "postnatal subependymal zone" RELATED [] synonym: "postnatal subventricular zone" EXACT [MP:0004275] -synonym: "SEZ" EXACT ABBREVIATION [MP:0004275] +synonym: "SEZ" EXACT OMO:0003000 [MP:0004275] synonym: "subependymal layer" RELATED [MP:0004275] synonym: "subependymal plate" RELATED [MP:0004275] synonym: "subependymal zone" RELATED [MP:0004275] synonym: "subventricular zone" EXACT [MA:0000817] synonym: "subventricular zone of brain" EXACT [] -synonym: "SVZ" EXACT ABBREVIATION [MP:0004275] +synonym: "SVZ" EXACT OMO:0003000 [MP:0004275] xref: BAMS:SEL xref: BAMS:SEZ xref: BTO:0003090 @@ -99660,8 +99660,8 @@ name: cortical plate def: "The outer neural tube region in which post-mitotic neuroblasts migrate along radial glia to form the adult cortical layers[MP]." [http://www.ncbi.nlm.nih.gov/books/NBK10047, MP:0008439] subset: pheno_slim synonym: "cerebral cortex cortical plate" EXACT [] -synonym: "CP" BROAD ABBREVIATION [BRAINSPAN:BRAINSPAN] -synonym: "CxP" BROAD ABBREVIATION [PMID:23375746] +synonym: "CP" BROAD OMO:0003000 [BRAINSPAN:BRAINSPAN] +synonym: "CxP" BROAD OMO:0003000 [PMID:23375746] synonym: "future cortical layers II-VI" EXACT [http://orcid.org/0000-0002-6601-2165] synonym: "future neocortex" RELATED [http://orcid.org/0000-0002-6601-2165] synonym: "neocortex cortical plate" EXACT [] @@ -99728,7 +99728,7 @@ synonym: "neuraxis tuber" EXACT [FMA:83890] synonym: "tuber" RELATED [NLXANAT:20081232] synonym: "tuber of vermis of cerebellum" EXACT [FMA:83890] synonym: "tuberal region" RELATED [BAMS:tuberal_region] -synonym: "Ve-VIIB" RELATED ABBREVIATION [HBA:4708] +synonym: "Ve-VIIB" RELATED OMO:0003000 [HBA:4708] synonym: "vermic lobule VIIb" EXACT [NLXANAT:20081232] xref: BAMS:Tuberal_region xref: DHBA:12848 @@ -100366,7 +100366,7 @@ id: UBERON:0005376 name: olfactory bulb external plexiform layer def: "Cytoarchitectural part of the olfactory bulb, lying superior to the mitral cell layer and inferior to the glomerular layer. The EPL is mostly neuropil composed almost entirely of mitral and tulfted cell dendrites and granule cell dendrites and their synaptic inputs." [NLXANAT:20090403] subset: pheno_slim -synonym: "EPL" RELATED ABBREVIATION [BTO:0001319] +synonym: "EPL" RELATED OMO:0003000 [BTO:0001319] synonym: "external plexiform layer" BROAD [BTO:0001319] synonym: "external plexiform layer of the olfactory bulb" RELATED [BAMS:EPl] synonym: "OB outer plexiform layer" RELATED [DMBA:OB-Opl] @@ -100680,7 +100680,7 @@ id: UBERON:0005391 name: cortical layer II def: "Layer of neocortex lying just deep to molecular layer characterized by numerous small cell bodies." [NLXANAT:090808] synonym: "cerebral cortex, layer 2" EXACT [ABA:CTX2] -synonym: "EGL" RELATED ABBREVIATION [] +synonym: "EGL" RELATED OMO:0003000 [] synonym: "external granular cell layer" RELATED [] synonym: "external granular layer" RELATED [] synonym: "external granular layer of cerebral cortex" RELATED [] @@ -101084,7 +101084,7 @@ def: "Any of any of the secretory or sensory organs located in the brain region subset: pheno_slim synonym: "circumventricular organ" EXACT [NLXANAT:20090312] synonym: "circumventricular organ of neuraxis" EXACT [FMA:84081] -synonym: "CVO" EXACT ABBREVIATION [NLXANAT:20090312] +synonym: "CVO" EXACT OMO:0003000 [NLXANAT:20090312] xref: EMAPA:35243 xref: FMA:84081 xref: MA:0002942 @@ -101520,7 +101520,7 @@ def: "Vagal neural crest is adjacent to the first seven somites gives rise to bo subset: vertebrate_core synonym: "enteric neural crest" RELATED [] synonym: "post-otic neural crest" RELATED [ZFA:0000818] -synonym: "VNC" EXACT ABBREVIATION [XAO:0004191] +synonym: "VNC" EXACT OMO:0003000 [XAO:0004191] xref: EHDAA2:0002156 xref: EHDAA:669 xref: TAO:0000818 @@ -102872,7 +102872,7 @@ def: "Hindbrain segment or neuromere 1." [ZFA:0001031] subset: efo_slim subset: pheno_slim subset: vertebrate_core -synonym: "r1" EXACT ABBREVIATION [ZFA:0001031] +synonym: "r1" EXACT OMO:0003000 [ZFA:0001031] xref: DHBA:12667 xref: DMBA:16915 xref: EFO:0003608 @@ -102937,7 +102937,7 @@ def: "The third transiently divided segment of the developing rhombencephalon; r subset: efo_slim subset: pheno_slim subset: vertebrate_core -synonym: "r3" EXACT ABBREVIATION [ZFA:0000948] +synonym: "r3" EXACT OMO:0003000 [ZFA:0000948] xref: DHBA:12669 xref: DMBA:17093 xref: EFO:0003596 @@ -102959,7 +102959,7 @@ def: "The fourth transiently divided segment of the developing rhombencephalon; subset: efo_slim subset: pheno_slim subset: vertebrate_core -synonym: "r4" EXACT ABBREVIATION [ZFA:0001032] +synonym: "r4" EXACT OMO:0003000 [ZFA:0001032] xref: DHBA:12671 xref: DMBA:17156 xref: EFO:0003609 @@ -102981,7 +102981,7 @@ def: "The fifth transiently divided segment of the developing rhombencephalon; r subset: efo_slim subset: pheno_slim subset: vertebrate_core -synonym: "r5" EXACT ABBREVIATION [ZFA:0000823] +synonym: "r5" EXACT OMO:0003000 [ZFA:0000823] xref: DHBA:12673 xref: DMBA:17221 xref: EFO:0003580 @@ -103003,7 +103003,7 @@ def: "The sixth transiently divided segment of the developing rhombencephalon; r subset: efo_slim subset: pheno_slim subset: vertebrate_core -synonym: "r6" EXACT ABBREVIATION [ZFA:0000069] +synonym: "r6" EXACT OMO:0003000 [ZFA:0000069] xref: DHBA:12674 xref: DMBA:17290 xref: EFO:0003480 @@ -103025,7 +103025,7 @@ def: "The seventh transiently divided segment of the developing rhombencephalon; subset: efo_slim subset: pheno_slim subset: vertebrate_core -synonym: "r7" EXACT ABBREVIATION [ZFA:0000949] +synonym: "r7" EXACT OMO:0003000 [ZFA:0000949] xref: DHBA:12675 xref: DMBA:17353 xref: EFO:0003597 @@ -103046,7 +103046,7 @@ def: "The eighth transiently divided segment of the developing rhombencephalon; subset: efo_slim subset: pheno_slim subset: vertebrate_core -synonym: "r8" EXACT ABBREVIATION [ZFA:0000153] +synonym: "r8" EXACT OMO:0003000 [ZFA:0000153] xref: DHBA:12677 xref: DHBA:12868 xref: DMBA:17416 @@ -103231,7 +103231,7 @@ def: "The second transiently divided segment of the developing rhombencephalon; subset: efo_slim subset: pheno_slim subset: vertebrate_core -synonym: "r2" EXACT ABBREVIATION [ZFA:0000822] +synonym: "r2" EXACT OMO:0003000 [ZFA:0000822] xref: DHBA:12668 xref: DMBA:17023 xref: EFO:0003579 @@ -105487,7 +105487,7 @@ name: glomerular basement membrane def: "The layer of extracellular matrix that lies between the endothelium of the glomerular capillaries and the podocytes of the inner or visceral layer of the Bowman capsule; it is a fusion of the endothelial cell and podocyte basal laminas and acts as a physical barrier and an ion-selective filter." [MGI:anna, MP:0011348] subset: pheno_slim subset: vertebrate_core -synonym: "GBM" BROAD ABBREVIATION [] +synonym: "GBM" BROAD OMO:0003000 [] synonym: "glomerular capillary basement membrane" EXACT [MA:0001659] synonym: "glomerular filtration membrane" EXACT [ZFA:0005285] xref: EMAPA:28251 @@ -105678,7 +105678,7 @@ id: UBERON:0005807 name: rostral ventrolateral medulla def: "Control of blood pressure is crucially dependent on the integrity of a small region of the brainstem called the ventrolateral medulla. Within this part of the brain are the cells that control the heart, blood vessels, swallowing, breathing and many other functions of the body that are not noticed at a conscious level; such unconscious activities are known as 'Autonomic'. One of these regions is the Rostral Ventrolateral Medulla (RVLM) is also known as the pressor area of the medulla (medulla pressor). It receives inhibitory GABAergic input from the caudal ventrolateral medulla (CVLM). The RVLM is the primary regulator of the sympathetic nervous system, sending excitatory fibers (catecholaminergic) to the sympathetic preganglionic neurons in the spinal cord, via reticulospinal tract[WP]." [Wikipedia:Rostral_ventrolateral_medulla] synonym: "medulla pressor" EXACT [Wikipedia:Rostral_ventrolateral_medulla] -synonym: "RVLM" EXACT ABBREVIATION [] +synonym: "RVLM" EXACT OMO:0003000 [] xref: BTO:0002778 xref: Wikipedia:Rostral_ventrolateral_medulla is_a: UBERON:0002616 ! regional part of brain @@ -107080,7 +107080,7 @@ synonym: "pulmonary conus" EXACT [FMA:7216] synonym: "pulmonary conus" RELATED [MP:0010428] synonym: "right ventricle pulmonary outflow tract" EXACT [MP:0010428] synonym: "right ventricular outflow tract" EXACT [MP:0010428] -synonym: "RVOT" EXACT ABBREVIATION [MP:0010428] +synonym: "RVOT" EXACT OMO:0003000 [MP:0010428] xref: EMAPA:37926 {source="MA:th"} xref: FMA:7216 xref: NCIT:C61368 @@ -107100,7 +107100,7 @@ synonym: "aortic vestibule" EXACT [FMA:9473, MP:0010429] synonym: "heart left ventricle outflow tract" EXACT [MP:0010429] synonym: "left ventricular outflow" EXACT [FMA:9473] synonym: "left ventricular outflow tract" EXACT [HP:0011103] -synonym: "LVOT" EXACT ABBREVIATION [MP:0010429] +synonym: "LVOT" EXACT OMO:0003000 [MP:0010429] synonym: "outflow tract of left ventricle" EXACT [FMA:9473] synonym: "Sibson vestibule" EXACT [MP:0010429] synonym: "vestibulum aortae" EXACT LATIN [FMA:9473, FMA:TA] @@ -107294,7 +107294,7 @@ name: ansiform lobule crus I def: "." [MP:0010002] subset: pheno_slim synonym: "ansiform lobe of the cerebellum, crus 1" RELATED [NeuroNames:667] -synonym: "Cb-Crus I" RELATED ABBREVIATION [HBA:12938] +synonym: "Cb-Crus I" RELATED OMO:0003000 [HBA:12938] synonym: "crus I" RELATED LATIN [NeuroNames:667] synonym: "crus I (cerebelli)" RELATED LATIN [NeuroNames:667] synonym: "crus I of the ansiform lobule" RELATED [NeuroNames:667] @@ -107334,7 +107334,7 @@ name: ansiform lobule crus II def: "." [MP:0010003] subset: pheno_slim synonym: "ansiform lobe of the cerebellum, crus 2" RELATED [NeuroNames:668] -synonym: "Cb-Crus II" RELATED ABBREVIATION [HBA:12939] +synonym: "Cb-Crus II" RELATED OMO:0003000 [HBA:12939] synonym: "crus 2" RELATED [NeuroNames:668] synonym: "crus 2 of the ansiform lobule" RELATED [NeuroNames:668] synonym: "crus II" RELATED LATIN [NeuroNames:668] @@ -107489,7 +107489,7 @@ def: "The left branch of the atrioventricular bundle that separates at the bundl subset: pheno_slim synonym: "crus sinistrum (fasciculi atrioventricularis)" EXACT [FMA:9487] synonym: "crus sinistrum fasciculi atrioventricularis" EXACT LATIN [FMA:9487, FMA:TA] -synonym: "LBB" EXACT ABBREVIATION [] +synonym: "LBB" EXACT OMO:0003000 [] synonym: "left branch of atrioventricular bundle" EXACT [] synonym: "left bundle branch" EXACT [MP:0010566] synonym: "left bundle branch of bundle of His" EXACT [HP:0005172] @@ -107513,7 +107513,7 @@ def: "The right branch of the atrioventricular bundle that separates just below subset: pheno_slim synonym: "crus dextrum (fasciculi atrioventricularis)" EXACT [FMA:9486] synonym: "crus dextrum fasciculi atrioventricularis" EXACT LATIN [FMA:9486, FMA:TA] -synonym: "RBB" EXACT ABBREVIATION [] +synonym: "RBB" EXACT OMO:0003000 [] synonym: "right branch of atrioventricular bundle" EXACT [] synonym: "right bundle" EXACT [FMA:9486, MP:0010567] synonym: "right bundle branch" EXACT [FMA:9486] @@ -108558,7 +108558,7 @@ property_value: external_ontology_notes "in MA classified as part of insular cor id: UBERON:0006086 name: stria medullaris def: "The major afferent track to the habenula from the telencephalon (particularly in the septal side) in all vertebrates[Butler and Hodos]." [ISBN:0471888893] -synonym: "SM" BROAD ABBREVIATION [BIRNLEX:1066, NIFSTD:NeuroNames_abbrevSource] +synonym: "SM" BROAD OMO:0003000 [BIRNLEX:1066, NIFSTD:NeuroNames_abbrevSource] synonym: "stria habenularis" EXACT [BIRNLEX:1066] synonym: "stria medularis" RELATED [BAMS:sm] synonym: "stria medullaris (Wenzel-Wenzel)" EXACT [BIRNLEX:1066] @@ -108776,9 +108776,9 @@ synonym: "anterior transverse termporal area 41" EXACT DUBIOUS [BIRNLEX:1582] synonym: "area 41 of Brodmann" EXACT [BIRNLEX:1582, FMA:68638] synonym: "area 41 of Brodmann-1909" EXACT [BIRNLEX:1774] synonym: "area temporalis transversa anterior" EXACT [BIRNLEX:1774] -synonym: "B09-41" BROAD ABBREVIATION [BIRNLEX:1774, NIFSTD:SumsDB_abbrevSource] +synonym: "B09-41" BROAD OMO:0003000 [BIRNLEX:1774, NIFSTD:SumsDB_abbrevSource] synonym: "B09-41" EXACT [BIRNLEX:1774] -synonym: "BA41" EXACT ABBREVIATION [] +synonym: "BA41" EXACT OMO:0003000 [] synonym: "Brodmann (1909) area 41" EXACT [BIRNLEX:1774] synonym: "Brodmann area 41" EXACT [FMA:68638] synonym: "Brodmann area 41, anterior transverse temporal" EXACT [BIRNLEX:1774] @@ -108801,9 +108801,9 @@ synonym: "area 42 of Brodmann-1909" EXACT [BIRNLEX:1775] synonym: "area temporalis transversa posterior" EXACT [BIRNLEX:1775] synonym: "auditory association area" EXACT [BIRNLEX:1589] synonym: "auditory association cortex" RELATED [FMA:236867] -synonym: "B09-42" BROAD ABBREVIATION [BIRNLEX:1775, NIFSTD:SumsDB_abbrevSource] +synonym: "B09-42" BROAD OMO:0003000 [BIRNLEX:1775, NIFSTD:SumsDB_abbrevSource] synonym: "B09-42" EXACT [BIRNLEX:1775] -synonym: "BA42" EXACT ABBREVIATION [] +synonym: "BA42" EXACT OMO:0003000 [] synonym: "Brodmann (1909) area 42" EXACT [BIRNLEX:1775] synonym: "Brodmann area 42" EXACT [FMA:68639] synonym: "Brodmann area 42, posterior transverse temporal" EXACT [BIRNLEX:1775] @@ -108863,9 +108863,9 @@ synonym: "area 1 of Brodmann" EXACT [FMA:68597] synonym: "area 1 of Brodmann (guenon)" RELATED [NeuroNames:1022] synonym: "area 1 of Brodmann-1909" EXACT [BIRNLEX:1732] synonym: "area postcentralis intermedia" EXACT [BIRNLEX:1732] -synonym: "B09-1" BROAD ABBREVIATION [BIRNLEX:1732, NIFSTD:SumsDB_abbrevSource] +synonym: "B09-1" BROAD OMO:0003000 [BIRNLEX:1732, NIFSTD:SumsDB_abbrevSource] synonym: "B09-1" EXACT [BIRNLEX:1732] -synonym: "BA1" EXACT ABBREVIATION [] +synonym: "BA1" EXACT OMO:0003000 [] synonym: "Brodmann (1909) area 1" EXACT [BIRNLEX:1732] synonym: "Brodmann area 1" EXACT [BIRNLEX:1732] synonym: "Brodmann's area 1" EXACT [FMA:68597] @@ -108887,9 +108887,9 @@ synonym: "area 3 of Brodmann" EXACT [FMA:68599] synonym: "area 3 of Brodmann (guenon)" RELATED [NeuroNames:1006] synonym: "area 3 of Brodmann-1909" EXACT [BIRNLEX:1734] synonym: "area postcentralis oralis" EXACT [BIRNLEX:1734] -synonym: "B09-3" BROAD ABBREVIATION [BIRNLEX:1734, NIFSTD:SumsDB_abbrevSource] +synonym: "B09-3" BROAD OMO:0003000 [BIRNLEX:1734, NIFSTD:SumsDB_abbrevSource] synonym: "B09-3" EXACT [BIRNLEX:1734] -synonym: "BA3" EXACT ABBREVIATION [] +synonym: "BA3" EXACT OMO:0003000 [] synonym: "Brodmann (1909) area 3" EXACT [BIRNLEX:1734] synonym: "Brodmann area 3" EXACT [BIRNLEX:1734] synonym: "Brodmann's area 3" EXACT [FMA:68599] @@ -108913,9 +108913,9 @@ synonym: "area 24 of Brodmann" EXACT [FMA:68621] synonym: "area 24 of Brodmann-1905 (guenon)" RELATED [NeuroNames:1007] synonym: "area 24 of Brodmann-1909" EXACT [BIRNLEX:1755] synonym: "area cingularis anterior ventralis" EXACT [BIRNLEX:1755] -synonym: "B09-24" BROAD ABBREVIATION [BIRNLEX:1755, NIFSTD:SumsDB_abbrevSource] +synonym: "B09-24" BROAD OMO:0003000 [BIRNLEX:1755, NIFSTD:SumsDB_abbrevSource] synonym: "B09-24" EXACT [BIRNLEX:1755] -synonym: "BA24" EXACT ABBREVIATION [] +synonym: "BA24" EXACT OMO:0003000 [] synonym: "Brodmann (1909) area 24" EXACT [BIRNLEX:1755] synonym: "Brodmann area 24" EXACT [BIRNLEX:1755] synonym: "brodmann's area 24" RELATED [NeuroNames:1007] @@ -108938,9 +108938,9 @@ def: "Brodmann area 35, together with Brodmann area 36, is most frequently refer synonym: "area 35 of Brodmann" EXACT [FMA:68632] synonym: "area 35 of Brodmann-1909" EXACT [BIRNLEX:1768] synonym: "area perirhinalis" EXACT [BIRNLEX:1768] -synonym: "B09-35" BROAD ABBREVIATION [BIRNLEX:1768, NIFSTD:SumsDB_abbrevSource] +synonym: "B09-35" BROAD OMO:0003000 [BIRNLEX:1768, NIFSTD:SumsDB_abbrevSource] synonym: "B09-35" EXACT [BIRNLEX:1768] -synonym: "BA35" EXACT ABBREVIATION [] +synonym: "BA35" EXACT OMO:0003000 [] synonym: "Brodmann (1909) area 35" EXACT [BIRNLEX:1768] synonym: "Brodmann area 35" EXACT [BIRNLEX:1768] synonym: "Brodmann area 35, perirhinal" EXACT [BIRNLEX:1768] @@ -108963,9 +108963,9 @@ def: "Ectorhinal area 36 is a subdivision of the cytoarchitecturally defined tem synonym: "area 36 of Brodmann" EXACT [FMA:68633] synonym: "area 36 of Brodmann-1909" EXACT [BIRNLEX:1769] synonym: "area ectorhinalis" EXACT LATIN [BIRNLEX:1769] -synonym: "B09-36" BROAD ABBREVIATION [BIRNLEX:1769, NIFSTD:SumsDB_abbrevSource] +synonym: "B09-36" BROAD OMO:0003000 [BIRNLEX:1769, NIFSTD:SumsDB_abbrevSource] synonym: "B09-36" EXACT [BIRNLEX:1769] -synonym: "BA36" EXACT ABBREVIATION [] +synonym: "BA36" EXACT OMO:0003000 [] synonym: "Brodmann (1909) area 36" EXACT [BIRNLEX:1769] synonym: "Brodmann area 36" EXACT [BIRNLEX:1769] synonym: "ectorhinal" EXACT [BIRNLEX:1769] @@ -109017,7 +109017,7 @@ synonym: "basolateral nuclear complex" EXACT [BIRNLEX:2679] synonym: "basolateral nuclear group" EXACT [BIRNLEX:2679, FMA:84016] synonym: "basolateral nuclei of amygdala" EXACT [FMA:84016] synonym: "basolateral subdivision of amygdala" EXACT [FMA:84609] -synonym: "BL" EXACT ABBREVIATION [BIRNLEX:2679] +synonym: "BL" EXACT OMO:0003000 [BIRNLEX:2679] synonym: "pars basolateralis (Corpus amygdaloideum)" EXACT [BIRNLEX:2679] synonym: "set of basolateral nuclei of amygdala" RELATED [FMA:84016] synonym: "vicarious cortex" EXACT [BIRNLEX:2679, FMA:84016] @@ -111679,8 +111679,8 @@ def: "Portion of the renal tubule which is just posterior to the proximal straig subset: vertebrate_core synonym: "distal early tubules" RELATED PLURAL [ZFA:0005293] synonym: "early distal tubule of capillary loop nephron" RELATED [EMAPA:27788] -synonym: "IT1" EXACT ABBREVIATION [XAO:0000287] -synonym: "IT2" EXACT ABBREVIATION [XAO:0000287] +synonym: "IT1" EXACT OMO:0003000 [XAO:0000287] +synonym: "IT2" EXACT OMO:0003000 [XAO:0000287] synonym: "pronephric early distal tubule" RELATED [XAO:0000287] xref: AAO:0011034 xref: EMAPA:27788 @@ -112494,9 +112494,9 @@ synonym: "area 5 of Brodmann" RELATED [FMA:68601] synonym: "area 5 of Brodmann (guenon)" RELATED [NeuroNames:1015] synonym: "area 5 of Brodmann-1909" EXACT [BIRNLEX:1736] synonym: "area praeparietalis" EXACT [BIRNLEX:1736] -synonym: "B09-5" BROAD ABBREVIATION [BIRNLEX:1736, NIFSTD:SumsDB_abbrevSource] +synonym: "B09-5" BROAD OMO:0003000 [BIRNLEX:1736, NIFSTD:SumsDB_abbrevSource] synonym: "B09-5" EXACT [BIRNLEX:1736] -synonym: "BA5" EXACT ABBREVIATION [] +synonym: "BA5" EXACT OMO:0003000 [] synonym: "Brodmann (1909) area 5" EXACT [BIRNLEX:1736] synonym: "Brodmann area 5" EXACT [FMA:68601] synonym: "Brodmann area 5, preparietal" EXACT [BIRNLEX:1736] @@ -112526,9 +112526,9 @@ synonym: "area 6 of Brodmann" EXACT [FMA:68602] synonym: "area 6 of Brodmann (guenon)" RELATED [NeuroNames:1020] synonym: "area 6 of Brodmann-1909" EXACT [BIRNLEX:1737] synonym: "area frontalis agranularis" EXACT [BIRNLEX:1737] -synonym: "B09-6" BROAD ABBREVIATION [BIRNLEX:1737, NIFSTD:SumsDB_abbrevSource] +synonym: "B09-6" BROAD OMO:0003000 [BIRNLEX:1737, NIFSTD:SumsDB_abbrevSource] synonym: "B09-6" EXACT [BIRNLEX:1737] -synonym: "BA6" EXACT ABBREVIATION [] +synonym: "BA6" EXACT OMO:0003000 [] synonym: "Brodmann (1909) area 6" EXACT [BIRNLEX:1737] synonym: "Brodmann area 6" EXACT [FMA:68602] synonym: "Brodmann area 6, agranular frontal" EXACT [BIRNLEX:1737] @@ -112553,9 +112553,9 @@ synonym: "area 18 of Brodmann (guenon)" RELATED [NeuroNames:1027] synonym: "area 18 of Brodmann-1909" EXACT [BIRNLEX:1749] synonym: "area occipitalis" RELATED LATIN [NeuroNames:1027] synonym: "area parastriata" EXACT LATIN [BIRNLEX:1749, Wikipedia:Brodmann_area_18] -synonym: "B09-18" BROAD ABBREVIATION [BIRNLEX:1749, NIFSTD:SumsDB_abbrevSource] +synonym: "B09-18" BROAD OMO:0003000 [BIRNLEX:1749, NIFSTD:SumsDB_abbrevSource] synonym: "B09-18" EXACT [BIRNLEX:1749] -synonym: "BA18" EXACT ABBREVIATION [] +synonym: "BA18" EXACT OMO:0003000 [] synonym: "Brodmann (1909) area 18" EXACT [BIRNLEX:1749] synonym: "Brodmann area 18" EXACT [FMA:68615] synonym: "Brodmann area 18, parastriate" EXACT [BIRNLEX:1749] @@ -112587,9 +112587,9 @@ synonym: "area 30 of Brodmann" EXACT [FMA:68627] synonym: "area 30 of Brodmann-1909" EXACT [BIRNLEX:1764] synonym: "area retrolimbica agranularis" EXACT [BIRNLEX:1764] synonym: "area retrosplenialis agranularis" EXACT LATIN [Wikipedia:Brodmann_area_30] -synonym: "B09-30" BROAD ABBREVIATION [BIRNLEX:1764, NIFSTD:SumsDB_abbrevSource] +synonym: "B09-30" BROAD OMO:0003000 [BIRNLEX:1764, NIFSTD:SumsDB_abbrevSource] synonym: "B09-30" EXACT [BIRNLEX:1764] -synonym: "BA30" EXACT ABBREVIATION [] +synonym: "BA30" EXACT OMO:0003000 [] synonym: "Brodmann (1909) area 30" EXACT [BIRNLEX:1764] synonym: "Brodmann area 30" EXACT [FMA:68627] synonym: "Brodmann area 30, agranular retrolimbic" EXACT [BIRNLEX:1764] @@ -112610,9 +112610,9 @@ def: "Brodmann area 31, also known as dorsal posterior cingulate area 31, is a s synonym: "area 31 of Brodmann" EXACT [FMA:68628] synonym: "area 31 of Brodmann-1909" EXACT [BIRNLEX:1765] synonym: "area cingularis posterior dorsalis" EXACT LATIN [BIRNLEX:1765, Wikipedia:Brodmann_area_31] -synonym: "B09-31" BROAD ABBREVIATION [BIRNLEX:1765, NIFSTD:SumsDB_abbrevSource] +synonym: "B09-31" BROAD OMO:0003000 [BIRNLEX:1765, NIFSTD:SumsDB_abbrevSource] synonym: "B09-31" EXACT [BIRNLEX:1765] -synonym: "BA31" EXACT ABBREVIATION [] +synonym: "BA31" EXACT OMO:0003000 [] synonym: "Brodmann (1909) area 31" EXACT [BIRNLEX:1765] synonym: "Brodmann area 31" EXACT [FMA:68628] synonym: "Brodmann area 31, dorsal posterior cingulate" EXACT [BIRNLEX:1765] @@ -112636,9 +112636,9 @@ def: "Brodmann area 33, also known as pregenual area 33, is a subdivision of the synonym: "area 33 of Brodmann" EXACT [FMA:68630] synonym: "area 33 of Brodmann-1909" EXACT [BIRNLEX:1766] synonym: "area praegenualis" EXACT LATIN [BIRNLEX:1766, Wikipedia:Brodmann_area_33] -synonym: "B09-33" BROAD ABBREVIATION [BIRNLEX:1766, NIFSTD:SumsDB_abbrevSource] +synonym: "B09-33" BROAD OMO:0003000 [BIRNLEX:1766, NIFSTD:SumsDB_abbrevSource] synonym: "B09-33" EXACT [BIRNLEX:1766] -synonym: "BA33" EXACT ABBREVIATION [] +synonym: "BA33" EXACT OMO:0003000 [] synonym: "Brodmann (1909) area 33" EXACT [BIRNLEX:1766] synonym: "Brodmann area 33" EXACT [FMA:68630] synonym: "Brodmann area 33, pregenual" EXACT [BIRNLEX:1766] @@ -112660,9 +112660,9 @@ def: "Brodmann area 34 is a part of the brain. It has been described as part of synonym: "area 34 of Brodmann" EXACT [FMA:68631] synonym: "area 34 of Brodmann-1909" EXACT [BIRNLEX:1767] synonym: "area entorhinalis dorsalis" EXACT LATIN [BIRNLEX:1767, Wikipedia:Brodmann_area_34] -synonym: "B09-34" BROAD ABBREVIATION [BIRNLEX:1767, NIFSTD:SumsDB_abbrevSource] +synonym: "B09-34" BROAD OMO:0003000 [BIRNLEX:1767, NIFSTD:SumsDB_abbrevSource] synonym: "B09-34" EXACT [BIRNLEX:1767] -synonym: "BA34" EXACT ABBREVIATION [] +synonym: "BA34" EXACT OMO:0003000 [] synonym: "Brodmann (1909) area 34" EXACT [BIRNLEX:1767] synonym: "Brodmann area 34" EXACT [FMA:68631] synonym: "Brodmann area 34, dorsal entorhinal" EXACT [BIRNLEX:1767] @@ -112683,9 +112683,9 @@ def: "Brodmann area 37, or BA37, is part of the temporal cortex in the human bra synonym: "area 37 0f brodmann" EXACT [FMA:68634] synonym: "area 37 of Brodmann-1909" EXACT [BIRNLEX:1770] synonym: "area occipitotemporalis" EXACT LATIN [BIRNLEX:1770, Wikipedia:Brodmann_area_37] -synonym: "B09-37" BROAD ABBREVIATION [BIRNLEX:1770, NIFSTD:SumsDB_abbrevSource] +synonym: "B09-37" BROAD OMO:0003000 [BIRNLEX:1770, NIFSTD:SumsDB_abbrevSource] synonym: "B09-37" EXACT [BIRNLEX:1770] -synonym: "BA37" EXACT ABBREVIATION [] +synonym: "BA37" EXACT OMO:0003000 [] synonym: "Brodmann (1909) area 37" EXACT [BIRNLEX:1770] synonym: "Brodmann area 37" EXACT [FMA:68634] synonym: "Brodmann area 37, occipitotemporal" EXACT [BIRNLEX:1770] @@ -112708,9 +112708,9 @@ synonym: "anterior temporal lobe" EXACT [WikipediaVersioned:Brodmann_area_38&old synonym: "area 38 of Brodmann" EXACT [FMA:68635] synonym: "area 38 of Brodmann-1909" EXACT [BIRNLEX:1771] synonym: "area temporopolaris" EXACT [BIRNLEX:1771] -synonym: "B09-38" BROAD ABBREVIATION [BIRNLEX:1771, NIFSTD:SumsDB_abbrevSource] +synonym: "B09-38" BROAD OMO:0003000 [BIRNLEX:1771, NIFSTD:SumsDB_abbrevSource] synonym: "B09-38" EXACT [BIRNLEX:1771] -synonym: "BA38" EXACT ABBREVIATION [] +synonym: "BA38" EXACT OMO:0003000 [] synonym: "Brodmann (1909) area 38" EXACT [BIRNLEX:1771] synonym: "Brodmann area 38" EXACT [FMA:68635] synonym: "Brodmann area 38, temporopolar" EXACT [BIRNLEX:1771] @@ -112734,9 +112734,9 @@ synonym: "angular area 39" EXACT [FMA:68636] synonym: "area 39 of Brodmann" EXACT [FMA:68636] synonym: "area 39 of Brodmann-1909" EXACT [BIRNLEX:1772] synonym: "area angularis" EXACT [BIRNLEX:1772] -synonym: "B09-39" BROAD ABBREVIATION [BIRNLEX:1772, NIFSTD:SumsDB_abbrevSource] +synonym: "B09-39" BROAD OMO:0003000 [BIRNLEX:1772, NIFSTD:SumsDB_abbrevSource] synonym: "B09-39" EXACT [BIRNLEX:1772] -synonym: "BA39" EXACT ABBREVIATION [] +synonym: "BA39" EXACT OMO:0003000 [] synonym: "Brodmann (1909) area 39" EXACT [BIRNLEX:1772] synonym: "Brodmann area 39" EXACT [FMA:68636] synonym: "Brodmann area 39, angular" EXACT [BIRNLEX:1772] @@ -112756,9 +112756,9 @@ def: "Broca's area is a region of the inferior frontal gyrus (in the dominant ce synonym: "area 44 of Brodmann" EXACT [FMA:68641] synonym: "area 44 of Brodmann-1909" EXACT [BIRNLEX:1776] synonym: "area opercularis" EXACT [BIRNLEX:1776] -synonym: "B09-44" BROAD ABBREVIATION [BIRNLEX:1776, NIFSTD:SumsDB_abbrevSource] +synonym: "B09-44" BROAD OMO:0003000 [BIRNLEX:1776, NIFSTD:SumsDB_abbrevSource] synonym: "B09-44" EXACT [BIRNLEX:1776] -synonym: "BA44" EXACT ABBREVIATION [] +synonym: "BA44" EXACT OMO:0003000 [] synonym: "Brodmann (1909) area 44" EXACT [BIRNLEX:1776] synonym: "Brodmann area 44" EXACT [FMA:68641] synonym: "Brodmann area 44, opercular" EXACT [BIRNLEX:1776] @@ -112780,10 +112780,10 @@ def: "Part of the cytoarchitecturally defined frontal region of cerebral cortex. synonym: "area 45 of Brodmann" EXACT [FMA:68642] synonym: "area 45 of Brodmann-1909" EXACT [BIRNLEX:1777] synonym: "area triangularis" EXACT LATIN [BIRNLEX:1777, Wikipedia:Brodmann_area_45] -synonym: "B09-45" BROAD ABBREVIATION [BIRNLEX:1777, NIFSTD:SumsDB_abbrevSource] +synonym: "B09-45" BROAD OMO:0003000 [BIRNLEX:1777, NIFSTD:SumsDB_abbrevSource] synonym: "B09-45" EXACT [BIRNLEX:1777] -synonym: "BA45" BROAD ABBREVIATION [BIRNLEX:1777, NIFSTD:SumsDB_abbrevSource] -synonym: "BA45" EXACT ABBREVIATION [] +synonym: "BA45" BROAD OMO:0003000 [BIRNLEX:1777, NIFSTD:SumsDB_abbrevSource] +synonym: "BA45" EXACT OMO:0003000 [] synonym: "Brodmann (1909) area 45" EXACT [BIRNLEX:1777] synonym: "Brodmann area 45" EXACT [FMA:68642] synonym: "Brodmann area 45, triangular" EXACT [BIRNLEX:1777] @@ -112807,9 +112807,9 @@ synonym: "area 46" RELATED [FMA:68643] synonym: "area 46 of Brodmann" EXACT [FMA:68643] synonym: "area 46 of Brodmann-1909" EXACT [BIRNLEX:1778] synonym: "area frontalis media" EXACT [BIRNLEX:1778] -synonym: "B09-46" BROAD ABBREVIATION [BIRNLEX:1778, NIFSTD:SumsDB_abbrevSource] +synonym: "B09-46" BROAD OMO:0003000 [BIRNLEX:1778, NIFSTD:SumsDB_abbrevSource] synonym: "B09-46" EXACT [BIRNLEX:1778] -synonym: "BA46" EXACT ABBREVIATION [] +synonym: "BA46" EXACT OMO:0003000 [] synonym: "Brodmann (1909) area 46" EXACT [BIRNLEX:1778] synonym: "Brodmann area 46" EXACT [FMA:68643] synonym: "Brodmann area 46, middle frontal" EXACT [BIRNLEX:1778] @@ -112832,9 +112832,9 @@ def: "Brodmann area 47, or BA47, is part of the frontal cortex in the human brai synonym: "area 47 of Brodmann" EXACT [FMA:68644] synonym: "area 47 of Brodmann-1909" EXACT [BIRNLEX:1779] synonym: "area orbitalis" EXACT LATIN [BIRNLEX:1779, Wikipedia:Brodmann_area_47] -synonym: "B09-47" BROAD ABBREVIATION [BIRNLEX:1779, NIFSTD:SumsDB_abbrevSource] +synonym: "B09-47" BROAD OMO:0003000 [BIRNLEX:1779, NIFSTD:SumsDB_abbrevSource] synonym: "B09-47" EXACT [BIRNLEX:1779] -synonym: "BA47" EXACT ABBREVIATION [] +synonym: "BA47" EXACT OMO:0003000 [] synonym: "Brodmann (1909) area 47" EXACT [BIRNLEX:1779] synonym: "Brodmann area 47" EXACT [FMA:68644] synonym: "Brodmann area 47, orbital" EXACT [BIRNLEX:1779] @@ -112854,9 +112854,9 @@ name: Brodmann (1909) area 48 def: "Retrosubicular area 48 is a subdivision of the cytoarchitecturally defined hippocampal region of the cerebral cortex. In the human it is located on the medial surface of the temporal lobe. Cytoarchitectually it is bounded rostrally by the perirhinal area 35 and medially by the presubiculum. While described by Brodmann (Brodmann-1909), it was not included in his areal maps of human cortex (Brodmann-1909; Brodmann-1910)." [Wikipedia:Brodmann_area_48] synonym: "area 48 of Brodmann" EXACT [FMA:81151] synonym: "area retrosubicularis" EXACT [BIRNLEX:1791] -synonym: "B09-48" BROAD ABBREVIATION [BIRNLEX:1791, NIFSTD:SumsDB_abbrevSource] +synonym: "B09-48" BROAD OMO:0003000 [BIRNLEX:1791, NIFSTD:SumsDB_abbrevSource] synonym: "B09-48" EXACT [BIRNLEX:1791] -synonym: "BA48" EXACT ABBREVIATION [] +synonym: "BA48" EXACT OMO:0003000 [] synonym: "Brodmann (1909) area 48" EXACT [BIRNLEX:1791] synonym: "Brodmann area 48" EXACT [FMA:81151] synonym: "Brodmann area 48, retrosubicular" EXACT [BIRNLEX:1791] @@ -112877,9 +112877,9 @@ name: Brodmann (1909) area 52 def: "Parainsular area 52 (H) is a subdivision of the cytoarchitecturally defined temporal region of cerebral cortex. It is located in the bank of the lateral sulcus on the dorsal surface of the temporal lobe. Its medial boundary corresponds approximately to the junction between the temporal lobe and the insula. Cytoarchitecturally it is bounded laterally by the anterior transverse temporal area 42 (H) (Brodmann-1909)." [Wikipedia:Brodmann_area_52] synonym: "area 52 of Brodmann" EXACT [FMA:81153] synonym: "area parainsularis" EXACT [BIRNLEX:1792] -synonym: "B09-52" BROAD ABBREVIATION [BIRNLEX:1792, NIFSTD:SumsDB_abbrevSource] +synonym: "B09-52" BROAD OMO:0003000 [BIRNLEX:1792, NIFSTD:SumsDB_abbrevSource] synonym: "B09-52" EXACT [BIRNLEX:1792] -synonym: "BA52" EXACT ABBREVIATION [] +synonym: "BA52" EXACT OMO:0003000 [] synonym: "Brodmann (1909) area 52" EXACT [BIRNLEX:1792] synonym: "Brodmann area 52" EXACT [FMA:81153] synonym: "Brodmann area 52, parainsular" EXACT [BIRNLEX:1792] @@ -112897,7 +112897,7 @@ relationship: part_of UBERON:0000956 ! cerebral cortex id: UBERON:0006487 name: Hadjikhani et al. (1998) visuotopic area V2d synonym: "Hadjikhani et al. (1998) visuotopic area v2d" EXACT [BIRNLEX:4055] -synonym: "V2d" BROAD ABBREVIATION [BIRNLEX:4055, NIFSTD:SumsDB_abbrevSource] +synonym: "V2d" BROAD OMO:0003000 [BIRNLEX:4055, NIFSTD:SumsDB_abbrevSource] xref: BIRNLEX:4055 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0000955 ! brain @@ -115322,7 +115322,7 @@ synonym: "mammillotegmental tract" EXACT [FMA:62058] synonym: "mammillotegmental tract (Gudden)" RELATED [NeuroNames:423] synonym: "mammillotegmental tract of hypothalamus" EXACT [BIRNLEX:1497] synonym: "medial tegmental tract" RELATED [BAMS:mtg] -synonym: "MTG" BROAD ABBREVIATION [BIRNLEX:1497, NIFSTD:NeuroNames_abbrevSource] +synonym: "MTG" BROAD OMO:0003000 [BIRNLEX:1497, NIFSTD:NeuroNames_abbrevSource] synonym: "tractus hypothalamicotegmentalis" RELATED LATIN [NeuroNames:423] synonym: "tractus hypothalamotegmentalis" RELATED LATIN [NeuroNames:423] synonym: "tractus mamillo-tegmentalis" RELATED LATIN [NeuroNames:423] @@ -118091,7 +118091,7 @@ name: pars distalis of adenohypophysis def: "The distal part of adenohypophysis: the part that makes up the main body of the gland." [Dorlands_Medical_Dictionary:MerckSource, Wikipedia:Pars_distalis] subset: vertebrate_core synonym: "anterior lobe" RELATED [MA:0000854] -synonym: "DHP" BROAD ABBREVIATION [BIRNLEX:1022, NIFSTD:NeuroNames_abbrevSource] +synonym: "DHP" BROAD OMO:0003000 [BIRNLEX:1022, NIFSTD:NeuroNames_abbrevSource] synonym: "distal part of hypophysis" EXACT [BIRNLEX:1022] synonym: "distal part of the hypophysis" RELATED [NeuroNames:410] synonym: "pars anterior" BROAD [EHDAA2:0001416, MA:0000854, ZFA:0001195] @@ -118400,7 +118400,7 @@ name: chordo neural hinge def: "Portion of tissue that is posterior to the developing notochord during tail bud extension." [http://dev.biologists.org/content/136/10/1591.full, ZFA:0001082] subset: efo_slim synonym: "chordoneural hinge" EXACT [VHOG:0001382] -synonym: "CNH" EXACT ABBREVIATION [XAO:0000108] +synonym: "CNH" EXACT OMO:0003000 [XAO:0000108] xref: EFO:0003623 xref: TAO:0001082 xref: VHOG:0001382 @@ -119866,7 +119866,7 @@ name: medial entorhinal cortex def: "One of two subdivisions of the entorhinal cortex, located medially." [NeuroNames:1113, UBERON:cjm] comment: Connectivity notes: The medial entorhinal cortex preferentially connects with the postrhinal cortex, the presubiculum, visual association (occipital) and retrosplenial cortices[http://www.scholarpedia.org/article/Entorhinal_cortex] synonym: "entorhinal area, medial part" EXACT [] -synonym: "MEC" BROAD ABBREVIATION [http://www.scholarpedia.org/article/Entorhinal_cortex] +synonym: "MEC" BROAD OMO:0003000 [http://www.scholarpedia.org/article/Entorhinal_cortex] xref: BAMS:MEnt xref: BTO:0004346 xref: DHBA:10319 @@ -119886,7 +119886,7 @@ def: "One of two subdivisions of the entorhinal cortex, located laterally." [Neu comment: Connectivity notes: The lateral entorhinal cortex, for example, is strongly connected to the perirhinal cortex, olfactory and insular cortex and the amygdala.[http://www.scholarpedia.org/article/Entorhinal_cortex] synonym: "entorhinal area, lateral part" EXACT [ABA:ENTl] synonym: "entorhinal cortex lateral part" RELATED [BAMS:ENTl] -synonym: "LEC" BROAD ABBREVIATION [http://www.scholarpedia.org/article/Entorhinal_cortex] +synonym: "LEC" BROAD OMO:0003000 [http://www.scholarpedia.org/article/Entorhinal_cortex] xref: BAMS:ENTl xref: BAMS:LEnt xref: BTO:0004347 @@ -120177,7 +120177,7 @@ id: UBERON:0007249 name: dorsal accessory inferior olivary nucleus alt_id: UBERON:0014288 def: "The inferior olivary nucleus that is the smallest, and appears on transverse section as a curved lamina behind the primary olivary nucleus." [http://orcid.org/0000-0002-6601-2165, Wikipedia:Olivary_body#Olivary_nuclei] -synonym: "DAO" EXACT ABBREVIATION [NLXANAT:100310] +synonym: "DAO" EXACT OMO:0003000 [NLXANAT:100310] synonym: "dorsal accessory olivary nucleus" EXACT [FMA:72593] synonym: "dorsal accessory olive" EXACT [NLXANAT:100310] synonym: "inferior olivary complex dorsalaccessory nucleus" RELATED [BAMS:IOda] @@ -122281,7 +122281,7 @@ synonym: "set of nuclei of trapezoid body" RELATED [FMA:84023] synonym: "trapezoid gray" RELATED [BIRNLEX:745] synonym: "trapezoid nuclear complex" EXACT [BIRNLEX:745] synonym: "trapezoid nuclei" RELATED [BIRNLEX:745] -synonym: "Tz" BROAD ABBREVIATION [BIRNLEX:745, NIFSTD:NeuroNames_abbrevSource] +synonym: "Tz" BROAD OMO:0003000 [BIRNLEX:745, NIFSTD:NeuroNames_abbrevSource] xref: BAMS:NTB xref: BAMS:Tz xref: BIRNLEX:745 @@ -122838,7 +122838,7 @@ id: UBERON:0007707 name: superior cerebellar peduncle of midbrain def: "Regional part of superior cerebellar peduncle, located in the midbrain, consisting of a large bundle of fibers largely projecting from the deep cerebellar nuclei to the midbrain and thalamus. It is continuous with the superior cerebellar peduncle of the pons. (MM)." [BIRNLEX:1162] synonym: "pedunculus cerebellaris superior (mesencephalon)" RELATED LATIN [NeuroNames:820] -synonym: "SCPMB" BROAD ABBREVIATION [BIRNLEX:1162, NIFSTD:NeuroNames_abbrevSource] +synonym: "SCPMB" BROAD OMO:0003000 [BIRNLEX:1162, NIFSTD:NeuroNames_abbrevSource] synonym: "SCPMB" EXACT [BIRNLEX:1162] synonym: "superior cerebellar peduncle of midbrain" EXACT [BIRNLEX:1162] synonym: "superior cerebellar peduncle of the midbrain" RELATED [NeuroNames:820] @@ -122854,7 +122854,7 @@ id: UBERON:0007709 name: superior cerebellar peduncle of pons subset: pheno_slim synonym: "pedunculus cerebellaris superior (pontis)" RELATED LATIN [NeuroNames:833] -synonym: "SCPP" BROAD ABBREVIATION [BIRNLEX:1726, NIFSTD:NeuroNames_abbrevSource] +synonym: "SCPP" BROAD OMO:0003000 [BIRNLEX:1726, NIFSTD:NeuroNames_abbrevSource] synonym: "SCPP" EXACT [BIRNLEX:1726] synonym: "superior cerebellar peduncle of pons" EXACT [BIRNLEX:1726] synonym: "superior cerebellar peduncle of the pons" RELATED [NeuroNames:833] @@ -128380,7 +128380,7 @@ id: UBERON:0008881 name: rostral migratory stream def: "Unique telencephalic subventricular zones that extend from the lateral ventricles into the olfactory bulbs. Newly produced GABAergic interneurons migrate along the RMS and settle in the bulb." [BIRNLEX:1702, PMID:12453055] subset: pheno_slim -synonym: "RMS" RELATED ABBREVIATION [BTO:0003412] +synonym: "RMS" RELATED OMO:0003000 [BTO:0003412] synonym: "rostral migratory pathway" RELATED [Wikipedia:Rostral_migratory_stream] xref: BIRNLEX:1702 xref: BTO:0003412 @@ -128938,8 +128938,8 @@ subset: pheno_slim synonym: "postcentral gyrus" RELATED [Wikipedia:Sensory_system] synonym: "primary somatosensory area" RELATED [BAMS:SSp] synonym: "primary somatosensory cortex (area S1, areas 3,1,2)" EXACT [DHBA:10209] -synonym: "S1" BROAD ABBREVIATION [] -synonym: "S1C" RELATED ABBREVIATION [DHBA:10209] +synonym: "S1" BROAD OMO:0003000 [] +synonym: "S1C" RELATED OMO:0003000 [DHBA:10209] synonym: "somatosensory area 1" EXACT [Wikipedia:Sensory_system] xref: BAMS:S1 xref: BAMS:SSp @@ -128958,7 +128958,7 @@ id: UBERON:0008934 name: secondary somatosensory cortex def: "The area of the upper bank of the lateral sulcus that is involved in somatic sensation." [ISBN:0838580343, MP:0000863] subset: pheno_slim -synonym: "S2" BROAD ABBREVIATION [] +synonym: "S2" BROAD OMO:0003000 [] synonym: "somatosensory area 2" EXACT [Wikipedia:Sensory_system] synonym: "supplemental somatosensory area" RELATED [BAMS:SSs] xref: BAMS:S2 @@ -133660,7 +133660,7 @@ property_value: editor_note "check dorsolateral prefrontal neocortex" xsd:string id: UBERON:0009835 name: anterior cingulate cortex def: "The frontal part of the cingulate cortex that resembles a collar form around the corpus callosum. It includes both the ventral and dorsal areas of the cingulate cortex. Wikipedia:File:Gray727.svg." [BIRNLEX:936] -synonym: "ACC" RELATED ABBREVIATION [BTO:0004249] +synonym: "ACC" RELATED OMO:0003000 [BTO:0004249] xref: BIRNLEX:936 xref: BTO:0004249 xref: FMA:271599 @@ -133765,7 +133765,7 @@ relationship: surrounded_by UBERON:0004902 ! urogenital sinus epithelium id: UBERON:0009845 name: urogenital sinus mesenchyme def: "Mesenchyme that surrounds primitive urogenital sinus." [OBOL:automatic] -synonym: "UGM" EXACT ABBREVIATION [PMID:18977204] +synonym: "UGM" EXACT OMO:0003000 [PMID:18977204] xref: EMAPA:31500 intersection_of: UBERON:0003104 {source="PMID:18977204"} ! mesenchyme intersection_of: surrounds UBERON:0000164 {source="PMID:18977204"} ! primitive urogenital sinus @@ -133798,9 +133798,9 @@ relationship: part_of UBERON:0004902 {source="PMID:18977204"} ! urogenital sinus id: UBERON:0009848 name: zona limitans intrathalamica def: "A narrow stripe of cells that lies between the prospective dorsal and ventral thalami. This boundary contains signals that pattern the prethalamic and thalamic territories of the future mid-diencephalon." [GO:0022006, GO_REF:0000021, GOC:cls, GOC:dgh, GOC:dph, GOC:jid, GOC:mtg_15jun06, PMID:11425897, PMID:16452095, Wikipedia:Zona_limitans_intrathalamica] -synonym: "MDO" RELATED ABBREVIATION [Wikipedia:Thalamus] +synonym: "MDO" RELATED OMO:0003000 [Wikipedia:Thalamus] synonym: "mid-diencephalic organizer" RELATED [Wikipedia:Thalamus] -synonym: "ZLI" EXACT ABBREVIATION [GO:0022006] +synonym: "ZLI" EXACT OMO:0003000 [GO:0022006] synonym: "ZLI organizer" RELATED [Wikipedia:Thalamus] xref: EMAPA:36604 xref: TAO:0001344 @@ -134607,7 +134607,7 @@ property_value: external_ontology_notes "the structure in many ontologies called id: UBERON:0009952 name: dentate gyrus subgranular zone def: "A narrow layer of cells located between the granule cell layer and hilus of the dentate gyrus, where adult neurogenesis occurs." [Wikipedia:Subgranular_zone] -synonym: "SGZ" BROAD ABBREVIATION [] +synonym: "SGZ" BROAD OMO:0003000 [] synonym: "subgranular zone" EXACT [] synonym: "subgranular zone of dentate gyrus" EXACT [] xref: EMAPA:35831 @@ -135199,7 +135199,7 @@ id: UBERON:0010002 name: pulmonary neuroendocrine body def: "Corpuscular, organoid structures composed of PNECs, found as distinctive innervated clusters only within intrapulmonary airways, where they appear concentrated at airway branch points; NEBs reach from the basement membrane to the airway lumen and are thought to function as oxygen sensors." [MP:0010921] subset: pheno_slim -synonym: "NEB" RELATED ABBREVIATION [MP:0010921] +synonym: "NEB" RELATED OMO:0003000 [MP:0010921] synonym: "pulmonary neuroepithelial body" EXACT [MP:0010921] xref: EMAPA:37943 {source="MA:th"} is_a: UBERON:0000061 {source="MP"} ! anatomical structure @@ -136104,7 +136104,7 @@ synonym: "choriocapillaris" RELATED [XAO:0004176] synonym: "choroid vascular plexus" RELATED [] synonym: "choroid vasculature" RELATED [ZFA:0005094] synonym: "choroidal vascular plexus" RELATED [TAO:0005094] -synonym: "CVP" EXACT ABBREVIATION [ZFA:0005094] +synonym: "CVP" EXACT OMO:0003000 [ZFA:0005094] synonym: "optic choroid vascular plexus" RELATED [XAO:0004176] xref: TAO:0005094 xref: XAO:0004176 @@ -152377,7 +152377,7 @@ intersection_of: has_part GO:0045095 ! keratin filament id: UBERON:0012330 name: nasal-associated lymphoid tissue def: "The lymphocytic cell population present in the mucosa of the nasopharyngeal duct of some animals." [ncithesaurus:Nasal-Associated_Lymphoid_Tissue] -synonym: "NALT" EXACT ABBREVIATION [Wikipedia:Mucosa-associated_lymphoid_tissue#Categorisation] +synonym: "NALT" EXACT OMO:0003000 [Wikipedia:Mucosa-associated_lymphoid_tissue#Categorisation] synonym: "naso-pharyngeal lymphoid tissue" EXACT [FMA:79771] xref: FMA:79771 xref: MA:0003030 @@ -153815,7 +153815,7 @@ relationship: part_of UBERON:0003889 {source="FMA"} ! fallopian tube id: UBERON:0012649 name: anococcygeus muscle def: "One of a pair of thin sheets of smooth muscle inserting on the rectum, having a tendinous origin largely on sacral vertebrae." [PMID:9071980] -synonym: "AcM" RELATED ABBREVIATION [PMID:9071980] +synonym: "AcM" RELATED OMO:0003000 [PMID:9071980] synonym: "anococcygeus" EXACT [MA:0001533] xref: BTO:0005150 xref: EMAPA:37396 {source="MA:th"} @@ -155009,7 +155009,7 @@ property_value: taxon_notes "Primitive amniote feature found in primitive reptil id: UBERON:0013208 name: Grueneberg ganglion def: "An olfactory ganglion at the entrance of the nose of mammals that is involved in the detection of alarm pheromones and cold temperatures." [Wikipedia:Gr%C3%BCneberg_ganglion] -synonym: "GG" RELATED ABBREVIATION [NCBIBook:NBK55971] +synonym: "GG" RELATED OMO:0003000 [NCBIBook:NBK55971] synonym: "Gruneberg ganglion" RELATED [MA:0002891] synonym: "Grüneberg ganglion" EXACT [] synonym: "septal organ of Gruneberg" RELATED [MA:0002891] @@ -156454,7 +156454,7 @@ synonym: "area 11 of Brodmann (guenon)" RELATED [NeuroNames:1036] synonym: "area 11 of Brodmann-1909" EXACT [BIRNLEX:1742] synonym: "area orbitalis interna" RELATED LATIN [NeuroNames:1036] synonym: "area praefrontalis" BROAD [BIRNLEX:1742] -synonym: "B09-11" BROAD ABBREVIATION [BIRNLEX:1742, NIFSTD:SumsDB_abbrevSource] +synonym: "B09-11" BROAD OMO:0003000 [BIRNLEX:1742, NIFSTD:SumsDB_abbrevSource] synonym: "B09-11" EXACT [BIRNLEX:1742] synonym: "BA11" RELATED [FMA:68608] synonym: "Brodmann (1909) area 11" EXACT [BIRNLEX:1742] @@ -156512,7 +156512,7 @@ synonym: "area 2 of Brodmann" EXACT [FMA:68598] synonym: "area 2 of Brodmann (guenon)" RELATED [NeuroNames:1033] synonym: "area 2 of Brodmann-1909" EXACT [BIRNLEX:1733] synonym: "area postcentralis caudalis" EXACT [BIRNLEX:1733] -synonym: "B09-2" BROAD ABBREVIATION [BIRNLEX:1733, NIFSTD:SumsDB_abbrevSource] +synonym: "B09-2" BROAD OMO:0003000 [BIRNLEX:1733, NIFSTD:SumsDB_abbrevSource] synonym: "B09-2" EXACT [BIRNLEX:1733] synonym: "BA2" RELATED [FMA:68598] synonym: "Brodmann (1909) area 2" EXACT [BIRNLEX:1733] @@ -156536,7 +156536,7 @@ synonym: "area 4 of Brodmann" EXACT [FMA:68600] synonym: "area 4 of Brodmann (guenon)" RELATED [NeuroNames:1014] synonym: "area 4 of Brodmann-1909" EXACT [BIRNLEX:1735] synonym: "area gigantopyramidalis" EXACT [BIRNLEX:1735] -synonym: "B09-4" BROAD ABBREVIATION [BIRNLEX:1735, NIFSTD:SumsDB_abbrevSource] +synonym: "B09-4" BROAD OMO:0003000 [BIRNLEX:1735, NIFSTD:SumsDB_abbrevSource] synonym: "B09-4" EXACT [BIRNLEX:1735] synonym: "BA4" RELATED [FMA:68600] synonym: "Brodmann (1909) area 4" EXACT [BIRNLEX:1735] @@ -156560,7 +156560,7 @@ def: "Brodmann area 7 is one of Brodmann's cytologically defined regions of the synonym: "area 7 of Brodmann" EXACT [FMA:68604] synonym: "area 7 of Brodmann-1909" EXACT [BIRNLEX:1738] synonym: "area parietalis superior" EXACT LATIN [BIRNLEX:1738, Wikipedia:Brodmann_area_7] -synonym: "B09-7" BROAD ABBREVIATION [BIRNLEX:1738, NIFSTD:SumsDB_abbrevSource] +synonym: "B09-7" BROAD OMO:0003000 [BIRNLEX:1738, NIFSTD:SumsDB_abbrevSource] synonym: "B09-7" EXACT [BIRNLEX:1738] synonym: "BA7" RELATED [FMA:68604] synonym: "Brodmann (1909) area 7" EXACT [BIRNLEX:1738] @@ -156584,7 +156584,7 @@ synonym: "area 8 of Brodmann" EXACT [FMA:68605] synonym: "area 8 of Brodmann (guenon)" RELATED [NeuroNames:1034] synonym: "area 8 of Brodmann-1909" EXACT [BIRNLEX:1739] synonym: "area frontalis intermedia" EXACT LATIN [BIRNLEX:1739, Wikipedia:Brodmann_area_8] -synonym: "B09-8" BROAD ABBREVIATION [BIRNLEX:1739, NIFSTD:SumsDB_abbrevSource] +synonym: "B09-8" BROAD OMO:0003000 [BIRNLEX:1739, NIFSTD:SumsDB_abbrevSource] synonym: "B09-8" EXACT [BIRNLEX:1739] synonym: "BA8" RELATED [FMA:68605] synonym: "Brodmann (1909) area 8" EXACT [BIRNLEX:1739] @@ -156607,7 +156607,7 @@ synonym: "area 9 of Brodmann" EXACT [FMA:68606] synonym: "area 9 of Brodmann (guenon)" RELATED [NeuroNames:1024] synonym: "area 9 of Brodmann-1909" EXACT [BIRNLEX:1740] synonym: "area frontalis granularis" EXACT LATIN [BIRNLEX:1740, Wikipedia:Brodmann_area_9] -synonym: "B09-9" BROAD ABBREVIATION [BIRNLEX:1740, NIFSTD:SumsDB_abbrevSource] +synonym: "B09-9" BROAD OMO:0003000 [BIRNLEX:1740, NIFSTD:SumsDB_abbrevSource] synonym: "B09-9" EXACT [BIRNLEX:1740] synonym: "BA9" RELATED [FMA:68606] synonym: "Brodmann (1909) area 9" EXACT [BIRNLEX:1740] @@ -156630,7 +156630,7 @@ def: "Brodmann area 10, or BA10, is part of the frontal cortex in the human brai synonym: "area 10 of Brodmann" EXACT [FMA:68607] synonym: "area 10 of Brodmann-1909" EXACT [BIRNLEX:1741] synonym: "area frontopolaris" EXACT [BIRNLEX:1741] -synonym: "B09-10" BROAD ABBREVIATION [BIRNLEX:1741, NIFSTD:SumsDB_abbrevSource] +synonym: "B09-10" BROAD OMO:0003000 [BIRNLEX:1741, NIFSTD:SumsDB_abbrevSource] synonym: "B09-10" EXACT [BIRNLEX:1741] synonym: "BA10" RELATED [FMA:68607] synonym: "Brodmann (1909) area 10" EXACT [BIRNLEX:1741] @@ -156659,7 +156659,7 @@ synonym: "area 12 of Brodmann" EXACT [FMA:68609] synonym: "area 12 of Brodmann-1909" EXACT [BIRNLEX:1743] synonym: "area praefrontalis" BROAD [BIRNLEX:1743] synonym: "area praefrontalis" EXACT [BIRNLEX:1743] -synonym: "B09-12" BROAD ABBREVIATION [BIRNLEX:1743, NIFSTD:SumsDB_abbrevSource] +synonym: "B09-12" BROAD OMO:0003000 [BIRNLEX:1743, NIFSTD:SumsDB_abbrevSource] synonym: "B09-12" EXACT [BIRNLEX:1743] synonym: "BA12" RELATED [FMA:68609] synonym: "Brodmann (1909) area 12" EXACT [BIRNLEX:1743] @@ -156680,7 +156680,7 @@ name: Brodmann (1909) area 13 def: "Brodmann area 13 is a subdivision of the cerebral cortex as defined on the guenon monkey and on the basis of cytoarchitecture. Brodmann area 13 is found in humans, however it seems to act as a bridge between the lateral and medial layers of the brain. Thus it is sometimes misidentified as not being a Brodmann area." [Wikipedia:Brodmann_area_13] synonym: "area 13 of Brodmann" RELATED [FMA:68610] synonym: "area 13 of Brodmann-1909" EXACT [BIRNLEX:1744] -synonym: "B09-13" BROAD ABBREVIATION [BIRNLEX:1744, NIFSTD:SumsDB_abbrevSource] +synonym: "B09-13" BROAD OMO:0003000 [BIRNLEX:1744, NIFSTD:SumsDB_abbrevSource] synonym: "B09-13" EXACT [BIRNLEX:1744] synonym: "BA13" RELATED [FMA:68610] synonym: "Brodmann (1909) area 13" EXACT [BIRNLEX:1744] @@ -156698,7 +156698,7 @@ name: Brodmann (1909) area 14 def: "Brodmann Area 14 is one of Brodmann's subdivisions of the cerebral cortex in the brain. It was defined by Brodmann in the guenon monkey. No equivalent structure exists in humans." [Wikipedia:Brodmann_area_14] synonym: "area 14 of Brodmann" RELATED [FMA:68611] synonym: "area 14 of Brodmann-1909" EXACT [BIRNLEX:1745] -synonym: "B09-14" BROAD ABBREVIATION [BIRNLEX:1745, NIFSTD:SumsDB_abbrevSource] +synonym: "B09-14" BROAD OMO:0003000 [BIRNLEX:1745, NIFSTD:SumsDB_abbrevSource] synonym: "B09-14" EXACT [BIRNLEX:1745] synonym: "BA14" RELATED [FMA:68611] synonym: "Brodmann (1909) area 14" EXACT [BIRNLEX:1745] @@ -156718,7 +156718,7 @@ def: "Brodmann Area 15 is one of Brodmann's subdivisions of the cerebral cortex synonym: "area 15 of Brodmann" RELATED [NeuroNames:1010] synonym: "area 15 of Brodmann (guenon)" RELATED [NeuroNames:1010] synonym: "area 15 of Brodmann-1909" EXACT [BIRNLEX:1746] -synonym: "B09-15" BROAD ABBREVIATION [BIRNLEX:1746, NIFSTD:SumsDB_abbrevSource] +synonym: "B09-15" BROAD OMO:0003000 [BIRNLEX:1746, NIFSTD:SumsDB_abbrevSource] synonym: "B09-15" EXACT [BIRNLEX:1746] synonym: "BA15" RELATED [FMA:68612] synonym: "Brodmann (1909) area 15" EXACT [BIRNLEX:1746] @@ -156738,7 +156738,7 @@ def: "Brodmann area 16 is a subdivision of the cerebral cortex of the guenon def synonym: "area 16 of Brodmann" EXACT [FMA:68613] synonym: "area 16 of Brodmann (guenon)" RELATED [NeuroNames:1011] synonym: "area 16 of Brodmann-1909" EXACT [BIRNLEX:1747] -synonym: "B09-16" BROAD ABBREVIATION [BIRNLEX:1747, NIFSTD:SumsDB_abbrevSource] +synonym: "B09-16" BROAD OMO:0003000 [BIRNLEX:1747, NIFSTD:SumsDB_abbrevSource] synonym: "B09-16" EXACT [BIRNLEX:1747] synonym: "BA16" RELATED [FMA:68613] synonym: "Brodmann (1909) area 16" EXACT [BIRNLEX:1747] @@ -156760,7 +156760,7 @@ synonym: "area 19 of Brodmann (guenon)" RELATED [NeuroNames:1028] synonym: "area 19 of Brodmann-1909" EXACT [BIRNLEX:1750] synonym: "area peristriata" EXACT [BIRNLEX:1750] synonym: "area praeoccipitalis" RELATED LATIN [NeuroNames:1028] -synonym: "B09-19" BROAD ABBREVIATION [BIRNLEX:1750, NIFSTD:SumsDB_abbrevSource] +synonym: "B09-19" BROAD OMO:0003000 [BIRNLEX:1750, NIFSTD:SumsDB_abbrevSource] synonym: "B09-19" EXACT [BIRNLEX:1750] synonym: "BA19" RELATED [FMA:68616] synonym: "Brodmann (1909) area 19" EXACT [BIRNLEX:1750] @@ -156784,7 +156784,7 @@ synonym: "area 20 of Brodmann" EXACT [FMA:68617] synonym: "area 20 of Brodmann (guenon)" RELATED [NeuroNames:1025] synonym: "area 20 of Brodmann-1909" EXACT [BIRNLEX:1751] synonym: "area temporalis inferior" EXACT [BIRNLEX:1751] -synonym: "B09-20" BROAD ABBREVIATION [BIRNLEX:1751, NIFSTD:SumsDB_abbrevSource] +synonym: "B09-20" BROAD OMO:0003000 [BIRNLEX:1751, NIFSTD:SumsDB_abbrevSource] synonym: "B09-20" EXACT [BIRNLEX:1751] synonym: "BA20" RELATED [FMA:68617] synonym: "Brodmann (1909) area 20" EXACT [BIRNLEX:1751] @@ -156807,9 +156807,9 @@ synonym: "area 21 of Brodmann" EXACT [FMA:68618] synonym: "area 21 of Brodmann (guenon)" RELATED [NeuroNames:1016] synonym: "area 21 of Brodmann-1909" EXACT [BIRNLEX:1752] synonym: "area temporalis media" RELATED [BIRNLEX:1752] -synonym: "B09-21" BROAD ABBREVIATION [BIRNLEX:1752, NIFSTD:SumsDB_abbrevSource] +synonym: "B09-21" BROAD OMO:0003000 [BIRNLEX:1752, NIFSTD:SumsDB_abbrevSource] synonym: "B09-21" EXACT [BIRNLEX:1752] -synonym: "BA21" EXACT ABBREVIATION [] +synonym: "BA21" EXACT OMO:0003000 [] synonym: "Brodmann (1909) area 21" EXACT [BIRNLEX:1752] synonym: "Brodmann area 21" EXACT [] synonym: "Brodmann area 21, middle temporal" EXACT [BIRNLEX:1752] @@ -156830,7 +156830,7 @@ synonym: "area 22 of Brodmann" EXACT [FMA:68619] synonym: "area 22 of Brodmann (guenon)" RELATED [NeuroNames:1017] synonym: "area 22 of Brodmann-1909" EXACT [BIRNLEX:1753] synonym: "area temporalis superior" EXACT LATIN [BIRNLEX:1753, Wikipedia:Brodmann_area_22] -synonym: "B09-22" BROAD ABBREVIATION [BIRNLEX:1753, NIFSTD:SumsDB_abbrevSource] +synonym: "B09-22" BROAD OMO:0003000 [BIRNLEX:1753, NIFSTD:SumsDB_abbrevSource] synonym: "B09-22" EXACT [BIRNLEX:1753] synonym: "BA22" RELATED [FMA:68619] synonym: "Brodmann (1909) area 22" EXACT [BIRNLEX:1753] @@ -156854,7 +156854,7 @@ synonym: "area 23 of Brodmann (guenon)" RELATED [NeuroNames:1018] synonym: "area 23 of Brodmann-1909" EXACT [BIRNLEX:1754] synonym: "area cingularis posterior" RELATED LATIN [NeuroNames:1018] synonym: "area cingularis posterior ventralis" EXACT LATIN [BIRNLEX:1754, Wikipedia:Brodmann_area_23] -synonym: "B09-23" BROAD ABBREVIATION [BIRNLEX:1754, NIFSTD:SumsDB_abbrevSource] +synonym: "B09-23" BROAD OMO:0003000 [BIRNLEX:1754, NIFSTD:SumsDB_abbrevSource] synonym: "B09-23" EXACT [BIRNLEX:1754] synonym: "BA23" RELATED [FMA:68620] synonym: "Brodmann (1909) area 23" EXACT [BIRNLEX:1754] @@ -156879,7 +156879,7 @@ synonym: "area 25 of Brodmann" EXACT [FMA:68622] synonym: "area 25 of Brodmann (guenon)" RELATED [NeuroNames:1029] synonym: "area 25 of Brodmann-1909" EXACT [BIRNLEX:1756] synonym: "area subgenualis" EXACT [BIRNLEX:1756] -synonym: "B09-25" BROAD ABBREVIATION [BIRNLEX:1756, NIFSTD:SumsDB_abbrevSource] +synonym: "B09-25" BROAD OMO:0003000 [BIRNLEX:1756, NIFSTD:SumsDB_abbrevSource] synonym: "B09-25" EXACT [BIRNLEX:1756] synonym: "BA25" RELATED [FMA:68622] synonym: "Brodmann (1909) area 25" EXACT [BIRNLEX:1756] @@ -156902,9 +156902,9 @@ synonym: "area 27 of Brodmann" EXACT [] synonym: "area 27 of Brodmann (guenon)" RELATED [NeuroNames:1039] synonym: "area 27 of Brodmann-1909" EXACT [BIRNLEX:1758] synonym: "area praesubicularis" EXACT [BIRNLEX:1758] -synonym: "B09-27" BROAD ABBREVIATION [BIRNLEX:1758, NIFSTD:SumsDB_abbrevSource] +synonym: "B09-27" BROAD OMO:0003000 [BIRNLEX:1758, NIFSTD:SumsDB_abbrevSource] synonym: "B09-27" EXACT [BIRNLEX:1758] -synonym: "BA27" EXACT ABBREVIATION [] +synonym: "BA27" EXACT OMO:0003000 [] synonym: "Brodmann (1909) area 27" EXACT [BIRNLEX:1758] synonym: "Brodmann area 26, presubicular" EXACT [BIRNLEX:1758] synonym: "Brodmann area 27" EXACT [FMA:68624] @@ -156928,9 +156928,9 @@ synonym: "area 28 of Brodmann (guenon)" RELATED [NeuroNames:1030] synonym: "area 28 of Brodmann-1909" EXACT [BIRNLEX:1759] synonym: "area entorhinalis" EXACT [BIRNLEX:1759] synonym: "area entorhinalis ventralis" EXACT LATIN [Wikipedia:Brodmann_area_28] -synonym: "B09-28" BROAD ABBREVIATION [BIRNLEX:1759, NIFSTD:SumsDB_abbrevSource] +synonym: "B09-28" BROAD OMO:0003000 [BIRNLEX:1759, NIFSTD:SumsDB_abbrevSource] synonym: "B09-28" EXACT [BIRNLEX:1759] -synonym: "BA28" EXACT ABBREVIATION [] +synonym: "BA28" EXACT OMO:0003000 [] synonym: "Brodmann (1909) area 28" EXACT [BIRNLEX:1759] synonym: "Brodmann area 28" EXACT [FMA:68625] synonym: "Brodmann area 28, entorhinal" EXACT [BIRNLEX:1759] @@ -156953,7 +156953,7 @@ synonym: "area 32 of Brodmann (guenon)" RELATED [NeuroNames:1021] synonym: "area 32 of Brodmann-1909" EXACT [BIRNLEX:1760] synonym: "area cingularis anterior dorsalis" EXACT LATIN [BIRNLEX:1760, Wikipedia:Brodmann_area_32] synonym: "area praelimbica" RELATED LATIN [NeuroNames:1021] -synonym: "B09-32" BROAD ABBREVIATION [BIRNLEX:1760, NIFSTD:SumsDB_abbrevSource] +synonym: "B09-32" BROAD OMO:0003000 [BIRNLEX:1760, NIFSTD:SumsDB_abbrevSource] synonym: "B09-32" EXACT [BIRNLEX:1760] synonym: "BA32" RELATED [FMA:68629] synonym: "Brodmann (1909) area 32" EXACT [BIRNLEX:1760] @@ -156977,7 +156977,7 @@ synonym: "area 43 of brodmann" EXACT [FMA:68640] synonym: "area 43 of Brodmann (guenon)" RELATED [NeuroNames:1013] synonym: "area 43 of Brodmann-1909" EXACT [BIRNLEX:1761] synonym: "area subcentralis" EXACT [BIRNLEX:1761] -synonym: "B09-43" BROAD ABBREVIATION [BIRNLEX:1761, NIFSTD:SumsDB_abbrevSource] +synonym: "B09-43" BROAD OMO:0003000 [BIRNLEX:1761, NIFSTD:SumsDB_abbrevSource] synonym: "B09-43" EXACT [BIRNLEX:1761] synonym: "BA43" RELATED [FMA:68640] synonym: "Brodmann (1909) area 43" EXACT [BIRNLEX:1761] @@ -156996,7 +156996,7 @@ id: UBERON:0013562 name: Brodmann (1909) area 8a synonym: "area 8 of Brodmann (guenon)" RELATED [NeuroNames:1034] synonym: "area 8a of Brodmann-1909" EXACT [BIRNLEX:1762] -synonym: "B09-8a" BROAD ABBREVIATION [BIRNLEX:1762, NIFSTD:SumsDB_abbrevSource] +synonym: "B09-8a" BROAD OMO:0003000 [BIRNLEX:1762, NIFSTD:SumsDB_abbrevSource] synonym: "B09-8a" EXACT [BIRNLEX:1762] synonym: "Brodmann (1909) area 8a" EXACT [BIRNLEX:1762] synonym: "Brodmann area 8a" EXACT [] @@ -157012,7 +157012,7 @@ def: "Brodmann area 40, or BA40, is part of the parietal cortex in the human bra synonym: "area 40 of Brodmann" EXACT [FMA:68637] synonym: "area 40 of Brodmann-1909" EXACT [BIRNLEX:1773] synonym: "area supramarginalis" EXACT [BIRNLEX:1773] -synonym: "B09-40" BROAD ABBREVIATION [BIRNLEX:1773, NIFSTD:SumsDB_abbrevSource] +synonym: "B09-40" BROAD OMO:0003000 [BIRNLEX:1773, NIFSTD:SumsDB_abbrevSource] synonym: "B09-40" EXACT [BIRNLEX:1773] synonym: "Brodmann (1909) area 40" EXACT [BIRNLEX:1773] synonym: "Brodmann area 40" EXACT [FMA:68637] @@ -158344,7 +158344,7 @@ relationship: part_of UBERON:0002268 {source="AAO"} ! olfactory organ [Term] id: UBERON:0013733 name: caudal linear nucleus -synonym: "CLi" EXACT ABBREVIATION [PMID:21653852] +synonym: "CLi" EXACT OMO:0003000 [PMID:21653852] synonym: "posterior linear nucleus" EXACT [OBOL:automatic] xref: FMA:231003 xref: HBA:9470 @@ -158356,7 +158356,7 @@ id: UBERON:0013734 name: rostral linear nucleus def: "Nucleus of the medial ventral tegmental area, originally identified in the rat but also in cat, monkey and human, comprising an average of 7% volume of the VTA across the different species, with the largest being present in the cat." [NLX:144319] synonym: "anterior linear nucleus" EXACT [OBOL:automatic] -synonym: "RLi" EXACT ABBREVIATION [PMID:16292327] +synonym: "RLi" EXACT OMO:0003000 [PMID:16292327] synonym: "rostral linear nucleus of the raphe" RELATED [PMID:21653852] xref: BAMS:LR xref: DHBA:12234 @@ -158373,7 +158373,7 @@ property_value: editor_note "Brain Info does not list the linear nuclei as part id: UBERON:0013736 name: interfascicular linear nucleus synonym: "central linear nucleus" RELATED [] -synonym: "IF" RELATED ABBREVIATION [PMID:21653852] +synonym: "IF" RELATED OMO:0003000 [PMID:21653852] synonym: "intermediate linear nucleus" RELATED [FMA:77503] xref: DHBA:12262 xref: FMA:77503 @@ -158384,7 +158384,7 @@ is_a: UBERON:0002308 ! nucleus of brain [Term] id: UBERON:0013737 name: paranigral nucleus -synonym: "PN" BROAD ABBREVIATION [PMID:21653852] +synonym: "PN" BROAD OMO:0003000 [PMID:21653852] xref: DHBA:12265 xref: FMA:77497 xref: HBA:9474 @@ -158397,7 +158397,7 @@ id: UBERON:0013738 name: parabrachial pigmental nucleus def: "Nucleus identified in the medial ventral tegmental area that borders the red nucleus and superior cerebellar peduncle dorsally, the medial lemniscus laterally, the subtantia nigra pars compacta and paranigral nucleus ventrally and the rostral linear nucleus and interfascicular nucleus medially. Generally, the largest nucleus in the ventral tegmental area, occupying an average of 50% of the total volume as measured in rat, cat, monkey and human." [NLX:144307] synonym: "parabrachial pigmented nucleus" EXACT [NLX:144307] -synonym: "PBP" BROAD ABBREVIATION [PMID:21653852] +synonym: "PBP" BROAD OMO:0003000 [PMID:21653852] xref: BAMS:PBP xref: DHBA:12263 xref: FMA:77496 @@ -160296,7 +160296,7 @@ id: UBERON:0014509 name: distal sesamoid impar ligament def: "A short wide fibrous structure that attaches proximally to the navicular (distal sesamoid) and distally to the palmar margin of the flexor surface of the distal phalanx." [http://orcid.org/0000-0002-6601-2165] synonym: "distal sesamoidean impar ligament" EXACT [] -synonym: "DSIL" EXACT ABBREVIATION [] +synonym: "DSIL" EXACT OMO:0003000 [] synonym: "impar ligament of distal equine limb" EXACT [] xref: SCTID:370741005 is_a: UBERON:0008846 ! skeletal ligament @@ -160319,7 +160319,7 @@ intersection_of: part_of UBERON:0007362 ! omasum [Term] id: UBERON:0014521 name: anterodorsal nucleus of medial geniculate body -synonym: "ADMG" BROAD ABBREVIATION [BIRNLEX:1600, NIFSTD:NeuroNames_abbrevSource] +synonym: "ADMG" BROAD OMO:0003000 [BIRNLEX:1600, NIFSTD:NeuroNames_abbrevSource] synonym: "anterodorsal nucleus of medial geniculate complex" EXACT [BIRNLEX:1600] synonym: "anterodorsal nucleus of the medial geniculate body" RELATED [NeuroNames:852] synonym: "nucleus corporis geniculati medialis, pars anterodorsalis" RELATED [BIRNLEX:1600] @@ -160629,7 +160629,7 @@ intersection_of: subdivision_of UBERON:0002792 ! lumbar spinal cord id: UBERON:0014544 name: frontomarginal sulcus def: "A superficial feature of the human frontal lobe; it is located at the rostral margin of the orbital surface of the lobe (Ono-90). (NN)." [BIRNLEX:4000] -synonym: "FMS" BROAD ABBREVIATION [BIRNLEX:4000, NIFSTD:SumsDB_abbrevSource] +synonym: "FMS" BROAD OMO:0003000 [BIRNLEX:4000, NIFSTD:SumsDB_abbrevSource] synonym: "fronto marginal sulcus" RELATED [BAMS:frs] synonym: "frontomarginal sulcus" EXACT HUMAN_PREFERRED [BIRNLEX:4000] synonym: "sulcus fronto-marginalis" RELATED LATIN [NeuroNames:1614] @@ -160953,7 +160953,7 @@ intersection_of: part_of UBERON:0007639 ! hippocampus alveus [Term] id: UBERON:0014589 name: anterior nucleus of hypothalamus anterior part -synonym: "AHNa" BROAD ABBREVIATION [BIRNLEX:1109, NIFSTD:Swanson-rat-1998_abbrevSource] +synonym: "AHNa" BROAD OMO:0003000 [BIRNLEX:1109, NIFSTD:Swanson-rat-1998_abbrevSource] synonym: "anterior hypothalamic nucleus anterior part" RELATED [BAMS:AHNa] synonym: "anterior hypothalamic nucleus, anterior part" RELATED [BAMS:AHNa] synonym: "anterior nucleus of hypothalamus anterior part" EXACT HUMAN_PREFERRED [BIRNLEX:1109] @@ -160967,7 +160967,7 @@ relationship: part_of UBERON:0002634 ! anterior nucleus of hypothalamus [Term] id: UBERON:0014590 name: anterior nucleus of hypothalamus central part -synonym: "AHNc" BROAD ABBREVIATION [BIRNLEX:1119, NIFSTD:Swanson-rat-1998_abbrevSource] +synonym: "AHNc" BROAD OMO:0003000 [BIRNLEX:1119, NIFSTD:Swanson-rat-1998_abbrevSource] synonym: "anterior hypothalamic area central part" RELATED [BAMS:AHC] synonym: "anterior hypothalamic area, central part" RELATED [BAMS:AHC] synonym: "anterior hypothalamic central part" RELATED [BAMS:AHNc] @@ -160985,7 +160985,7 @@ relationship: part_of UBERON:0002634 ! anterior nucleus of hypothalamus [Term] id: UBERON:0014591 name: anterior nucleus of hypothalamus posterior part -synonym: "AHNp" BROAD ABBREVIATION [BIRNLEX:1125, NIFSTD:Swanson-rat-1998_abbrevSource] +synonym: "AHNp" BROAD OMO:0003000 [BIRNLEX:1125, NIFSTD:Swanson-rat-1998_abbrevSource] synonym: "anterior hypothalamic nucleus posterior part" RELATED [BAMS:AHNp] synonym: "anterior hypothalamic nucleus, posterior part" RELATED [BAMS:AHNp] synonym: "anterior hypothalamic posterior part" RELATED [BAMS:AHNp] @@ -161001,7 +161001,7 @@ relationship: part_of UBERON:0002634 ! anterior nucleus of hypothalamus [Term] id: UBERON:0014592 name: anterior nucleus of hypothalamus dorsal part -synonym: "AHNd" BROAD ABBREVIATION [BIRNLEX:1139, NIFSTD:Swanson-rat-1998_abbrevSource] +synonym: "AHNd" BROAD OMO:0003000 [BIRNLEX:1139, NIFSTD:Swanson-rat-1998_abbrevSource] synonym: "anterior hypothalamic dorsal part" RELATED [BAMS:AHNd] synonym: "anterior hypothalamic nucleus dorsal part" RELATED [BAMS:AHNd] synonym: "anterior hypothalamic nucleus, dorsal part" RELATED [BAMS:AHD, BAMS:AHNd] @@ -161017,7 +161017,7 @@ relationship: part_of UBERON:0002634 ! anterior nucleus of hypothalamus [Term] id: UBERON:0014593 name: tuberomammillary nucleus dorsal part -synonym: "TMd" BROAD ABBREVIATION [BIRNLEX:1290, NIFSTD:Swanson-rat-1998_abbrevSource] +synonym: "TMd" BROAD OMO:0003000 [BIRNLEX:1290, NIFSTD:Swanson-rat-1998_abbrevSource] synonym: "tuberomammillary nucleus dorsal part" EXACT HUMAN_PREFERRED [BIRNLEX:1290] synonym: "tuberomammillary nucleus, dorsal part" RELATED [BAMS:TMd] xref: BAMS:TMd @@ -161030,7 +161030,7 @@ relationship: part_of UBERON:0001936 {source="NIFSTD"} ! tuberomammillary nucleu [Term] id: UBERON:0014594 name: tuberomammillary nucleus ventral part -synonym: "TMv" BROAD ABBREVIATION [BIRNLEX:1294, NIFSTD:Swanson-rat-1998_abbrevSource] +synonym: "TMv" BROAD OMO:0003000 [BIRNLEX:1294, NIFSTD:Swanson-rat-1998_abbrevSource] synonym: "tuberomammillary nucleus ventral part" EXACT HUMAN_PREFERRED [BIRNLEX:1294] xref: BAMS:TMv xref: BIRNLEX:1294 @@ -161045,7 +161045,7 @@ synonym: "paraventricular hypothalamic nucleus medial parvicellular part, ventra synonym: "paraventricular hypothalamic nucleus, descending division, medial parvicellular part, ventral zone" RELATED [BAMS:PVHmpv] synonym: "paraventricular nucleus of the hypothalamus descending division - medial parvicellular part, ventral zone" EXACT HUMAN_PREFERRED [BIRNLEX:1342] synonym: "paraventricular nucleus of the hypothalamus, descending division, medial parvicellular part, ventral zone" RELATED [BAMS:PVHmpv] -synonym: "PVHmpv" BROAD ABBREVIATION [BIRNLEX:1342, NIFSTD:Swanson-rat-1998_abbrevSource] +synonym: "PVHmpv" BROAD OMO:0003000 [BIRNLEX:1342, NIFSTD:Swanson-rat-1998_abbrevSource] xref: BAMS:PVHmpv xref: BIRNLEX:1342 xref: HBA:4576 @@ -161060,7 +161060,7 @@ synonym: "paraventricular hypothalamic nucleus dorsal parvicellular part" RELATE synonym: "paraventricular hypothalamic nucleus, descending division, dorsal parvicellular part" RELATED [BAMS:PVHdp] synonym: "paraventricular nucleus of the hypothalamus descending division - dorsal parvicellular part" EXACT HUMAN_PREFERRED [BIRNLEX:1348] synonym: "paraventricular nucleus of the hypothalamus, descending division, dorsal parvicellular part" RELATED [BAMS:PVHdp] -synonym: "PVHdp" BROAD ABBREVIATION [BIRNLEX:1348, NIFSTD:Swanson-rat-1998_abbrevSource] +synonym: "PVHdp" BROAD OMO:0003000 [BIRNLEX:1348, NIFSTD:Swanson-rat-1998_abbrevSource] xref: BAMS:PVHdp xref: BIRNLEX:1348 xref: HBA:4577 @@ -161075,7 +161075,7 @@ synonym: "paraventricular hypothalamic nucleus lateral parvicellular part" RELAT synonym: "paraventricular hypothalamic nucleus, descending division, lateral parvicellular part" RELATED [BAMS:PVHlp] synonym: "paraventricular nucleus of the hypothalamus descending division - lateral parvicellular part" EXACT HUMAN_PREFERRED [BIRNLEX:1354] synonym: "paraventricular nucleus of the hypothalamus, descending division, lateral parvicellular part" RELATED [BAMS:PVHlp] -synonym: "PVHlp" BROAD ABBREVIATION [BIRNLEX:1354, NIFSTD:Swanson-rat-1998_abbrevSource] +synonym: "PVHlp" BROAD OMO:0003000 [BIRNLEX:1354, NIFSTD:Swanson-rat-1998_abbrevSource] xref: BAMS:PVHlp xref: BIRNLEX:1354 xref: HBA:4578 @@ -161091,7 +161091,7 @@ synonym: "paraventricular hypothalamic nucleus, descending division, forniceal p synonym: "paraventricular nucleus of the hypothalamus descending division - forniceal part" EXACT HUMAN_PREFERRED [BIRNLEX:1374] synonym: "paraventricular nucleus of the hypothalamus, descending division, forniceal part" RELATED [BAMS:PVHf] synonym: "paraventricular nucleus of the hypothalamus, parvicellular division forniceal part" RELATED [BAMS:PVHf] -synonym: "PVHf" BROAD ABBREVIATION [BIRNLEX:1374, NIFSTD:Swanson-rat-1998_abbrevSource] +synonym: "PVHf" BROAD OMO:0003000 [BIRNLEX:1374, NIFSTD:Swanson-rat-1998_abbrevSource] xref: BAMS:PVHf xref: BIRNLEX:1374 xref: HBA:4579 @@ -161106,7 +161106,7 @@ synonym: "paraventricular hypothalamic nucleus anterior magnocellular part" RELA synonym: "paraventricular hypothalamic nucleus, magnocellular division, anterior magnocellular part" RELATED [BAMS:PVHam] synonym: "paraventricular nucleus of the hypothalamus magnocellular division - anterior magnocellular part" EXACT HUMAN_PREFERRED [BIRNLEX:1384] synonym: "paraventricular nucleus of the hypothalamus, magnocellular division, anterior magnocellular part" RELATED [BAMS:PVHam] -synonym: "PVHam" BROAD ABBREVIATION [BIRNLEX:1384, NIFSTD:Swanson-rat-1998_abbrevSource] +synonym: "PVHam" BROAD OMO:0003000 [BIRNLEX:1384, NIFSTD:Swanson-rat-1998_abbrevSource] xref: BAMS:PVHam xref: BIRNLEX:1384 xref: HBA:4581 @@ -161121,7 +161121,7 @@ synonym: "paraventricular hypothalamic nucleus medial magnocellular part" RELATE synonym: "paraventricular hypothalamic nucleus, magnocellular division, medial magnocellular part" RELATED [BAMS:PVHmm] synonym: "paraventricular nucleus of the hypothalamus magnocellular division - medial magnocellular part" EXACT HUMAN_PREFERRED [BIRNLEX:1388] synonym: "paraventricular nucleus of the hypothalamus, magnocellular division, medial magnocellular part" RELATED [BAMS:PVHmm] -synonym: "PVHmm" BROAD ABBREVIATION [BIRNLEX:1388, NIFSTD:Swanson-rat-1998_abbrevSource] +synonym: "PVHmm" BROAD OMO:0003000 [BIRNLEX:1388, NIFSTD:Swanson-rat-1998_abbrevSource] xref: BAMS:PVHmm xref: BIRNLEX:1388 xref: HBA:4582 @@ -161136,7 +161136,7 @@ synonym: "paraventricular hypothalamic nucleus posterior magnocellular part" REL synonym: "paraventricular hypothalamic nucleus, magnocellular division, posterior magnocellular part" RELATED [BAMS:PVHpm] synonym: "paraventricular nucleus of the hypothalamus magnocellular division - posterior magnocellular part" EXACT HUMAN_PREFERRED [BIRNLEX:1394] synonym: "paraventricular nucleus of the hypothalamus, magnocellular division, posterior magnocellular part" RELATED [BAMS:PVHpm] -synonym: "PVHpm" BROAD ABBREVIATION [BIRNLEX:1394, NIFSTD:Swanson-rat-1998_abbrevSource] +synonym: "PVHpm" BROAD OMO:0003000 [BIRNLEX:1394, NIFSTD:Swanson-rat-1998_abbrevSource] xref: BAMS:PVHpm xref: BIRNLEX:1394 xref: HBA:4583 @@ -161150,7 +161150,7 @@ name: paraventricular nucleus of the hypothalamus descending division synonym: "paraventricular hypothalamic nucleus, descending division" RELATED [BAMS:PVHd] synonym: "paraventricular nucleus of the hypothalamus descending division" EXACT HUMAN_PREFERRED [BIRNLEX:1413] synonym: "paraventricular nucleus of the hypothalamus, descending division" RELATED [BAMS:PVHd] -synonym: "PVHd" BROAD ABBREVIATION [BIRNLEX:1413, NIFSTD:Swanson-rat-1992_abbrevSource] +synonym: "PVHd" BROAD OMO:0003000 [BIRNLEX:1413, NIFSTD:Swanson-rat-1992_abbrevSource] xref: BAMS:PVHd xref: BIRNLEX:1413 xref: DHBA:10477 @@ -161167,7 +161167,7 @@ synonym: "paraventricular hypothalamic nucleus magnocellular division" RELATED [ synonym: "paraventricular hypothalamic nucleus, magnocellular division" RELATED [BAMS:PVHm] synonym: "paraventricular nucleus of the hypothalamus magnocellular division" EXACT HUMAN_PREFERRED [BIRNLEX:1419] synonym: "paraventricular nucleus of the hypothalamus, magnocellular division" RELATED [BAMS:PVHm] -synonym: "PVHm" BROAD ABBREVIATION [BIRNLEX:1419, NIFSTD:Swanson-rat-1992_abbrevSource] +synonym: "PVHm" BROAD OMO:0003000 [BIRNLEX:1419, NIFSTD:Swanson-rat-1992_abbrevSource] xref: BAMS:PVHm xref: BIRNLEX:1419 xref: DHBA:10478 @@ -161184,7 +161184,7 @@ synonym: "paraventricular hypothalamic nucleus parvicellular division" RELATED [ synonym: "paraventricular hypothalamic nucleus, parvicellular division" RELATED [BAMS:PVHp] synonym: "paraventricular nucleus of the hypothalamus parvicellular division" EXACT HUMAN_PREFERRED [BIRNLEX:1426] synonym: "paraventricular nucleus of the hypothalamus, parvicellular division" RELATED [BAMS:PVHp] -synonym: "PVHp" BROAD ABBREVIATION [BIRNLEX:1426, NIFSTD:Swanson-rat-1992_abbrevSource] +synonym: "PVHp" BROAD OMO:0003000 [BIRNLEX:1426, NIFSTD:Swanson-rat-1992_abbrevSource] xref: BAMS:PVHp xref: BIRNLEX:1426 xref: DHBA:10479 @@ -161321,7 +161321,7 @@ synonym: "accessory nerve root" EXACT HUMAN_PREFERRED [BIRNLEX:1580] synonym: "accessory portion of spinal accessory nerve" RELATED [NeuroNames:703] synonym: "bulbar accessory nerve" RELATED [NeuroNames:703] synonym: "bulbar part of accessory nerve" RELATED [NeuroNames:703] -synonym: "c11n" BROAD ABBREVIATION [BIRNLEX:1580, NIFSTD:NeuroNames_abbrevSource] +synonym: "c11n" BROAD OMO:0003000 [BIRNLEX:1580, NIFSTD:NeuroNames_abbrevSource] synonym: "cranial accessory nerve" RELATED [NeuroNames:703] synonym: "cranial part of accessory nerve" RELATED [BAMS:c11n] synonym: "cranial part of the accessory nerve" RELATED [NeuroNames:703] @@ -161365,7 +161365,7 @@ is_a: UBERON:0009630 {source="NIFSTD"} ! root of thoracic nerve id: UBERON:0014618 name: middle frontal sulcus synonym: "intermediate frontal sulcus" RELATED [NeuroNames:62] -synonym: "MFS" BROAD ABBREVIATION [BIRNLEX:1650, NIFSTD:NeuroNames_abbrevSource] +synonym: "MFS" BROAD OMO:0003000 [BIRNLEX:1650, NIFSTD:NeuroNames_abbrevSource] synonym: "middle frontal fissure" RELATED [BIRNLEX:1650] synonym: "middle frontal sulcus" EXACT HUMAN_PREFERRED [BIRNLEX:1650] synonym: "sulcus F3" RELATED [BIRNLEX:1650] @@ -162339,7 +162339,7 @@ id: UBERON:0014733 name: dorsal ventricular ridge of pallium def: "A large expansion of the lateral wall of the telencephalon, located in the pallium. Found in reptiles and birds." [http://icb.oxfordjournals.org/content/42/4/743.full, PMID:23027930] synonym: "dorsal ventricular ridge" EXACT [] -synonym: "DVR" RELATED ABBREVIATION [PMID:23027930] +synonym: "DVR" RELATED OMO:0003000 [PMID:23027930] is_a: UBERON:0002616 ! regional part of brain relationship: never_in_taxon NCBITaxon:40674 ! Mammalia relationship: only_in_taxon NCBITaxon:32524 ! Amniota @@ -162408,7 +162408,7 @@ synonym: "lateral pallium (everted brain)" RELATED [ISBN:0471888893] synonym: "lateral zone of dorsal telencephalon" EXACT [ZFA:0000536] synonym: "medial zone of dorsal telencephalic area" EXACT [] synonym: "medial zone of dorsal telencephalon" EXACT [] -synonym: "MP" BROAD ABBREVIATION [PMID:23375746] +synonym: "MP" BROAD OMO:0003000 [PMID:23375746] xref: TAO:0000536 xref: ZFA:0000536 is_a: UBERON:0002616 ! regional part of brain @@ -162424,7 +162424,7 @@ synonym: "area dorsalis telencephali, zona dorsalis" EXACT [] synonym: "dorsal zone of D" RELATED [] synonym: "dorsal zone of dorsal telencephalic area" EXACT [] synonym: "dorsal zone of dorsal telencephalon" EXACT [] -synonym: "DP" BROAD ABBREVIATION [PMID:23375746] +synonym: "DP" BROAD OMO:0003000 [PMID:23375746] xref: TAO:0000506 xref: ZFA:0000506 is_a: UBERON:0002616 ! regional part of brain @@ -162438,7 +162438,7 @@ def: "Subdivision of pallium that is located laterally." [ISBN:0471888893] synonym: "area dorsalis telencephali, zona lateralis" EXACT [] synonym: "lateral zone of D" EXACT [] synonym: "lateral zone of dorsal telencephalic area" EXACT [] -synonym: "LP" BROAD ABBREVIATION [PMID:23375746] +synonym: "LP" BROAD OMO:0003000 [PMID:23375746] synonym: "medial pallium (everted brain)" RELATED [ISBN:0471888893] synonym: "olfactory pallium" RELATED [ISBN:0471888893] synonym: "piriform pallium" RELATED [ISBN:0471888893] @@ -162513,7 +162513,7 @@ relationship: part_of UBERON:0000203 ! pallium id: UBERON:0014757 name: hyperpallium apicale def: "." [PMID:23027930] -synonym: "HA" RELATED ABBREVIATION [PMID:23027930] +synonym: "HA" RELATED OMO:0003000 [PMID:23027930] xref: BTO:0003402 is_a: UBERON:0002616 ! regional part of brain relationship: only_in_taxon NCBITaxon:8782 ! Aves @@ -162523,7 +162523,7 @@ relationship: part_of UBERON:0000203 ! pallium id: UBERON:0014758 name: interstitial part of hyperpallium apicale def: "." [PMID:23027930] -synonym: "IHA" RELATED ABBREVIATION [PMID:23027930] +synonym: "IHA" RELATED OMO:0003000 [PMID:23027930] is_a: UBERON:0002616 ! regional part of brain relationship: only_in_taxon NCBITaxon:8782 ! Aves relationship: part_of UBERON:0014757 ! hyperpallium apicale @@ -162533,7 +162533,7 @@ id: UBERON:0014759 name: entopallium def: "The major telecephalic thalamorecipient zone of the tectofugal visual system in Aves." [PMID:16041718] synonym: "core region of ectostriatum" RELATED [PMID:14681937] -synonym: "E" RELATED ABBREVIATION [PMID:16041718] +synonym: "E" RELATED OMO:0003000 [PMID:16041718] is_a: UBERON:0002616 ! regional part of brain relationship: only_in_taxon NCBITaxon:8782 ! Aves relationship: part_of UBERON:0000203 ! pallium @@ -163642,7 +163642,7 @@ id: UBERON:0014899 name: anterolateral ligament of knee def: "A ligament on the lateral aspect of the human knee, anterior to the fibular collateral ligament." [DOI:10.1111/joa.12087, Wikipedia:Anterolateral_ligament] synonym: "(mid-third) lateral capsular ligament" EXACT [DOI:10.1111/joa.12087] -synonym: "ALL" EXACT ABBREVIATION [DOI:10.1111/joa.12087] +synonym: "ALL" EXACT OMO:0003000 [DOI:10.1111/joa.12087] synonym: "anterolateral ligament" EXACT [DOI:10.1111/joa.12087] synonym: "capsulo-osseous layer of the iliotibial band" EXACT [DOI:10.1111/joa.12087] synonym: "ligament of Segond" EXACT [DOI:10.1111/joa.12087] @@ -163716,7 +163716,7 @@ relationship: part_of UBERON:0000955 ! brain id: UBERON:0014912 name: thalamic eminence synonym: "eminentia thalami" EXACT LATIN [ZFA:0007010] -synonym: "EMT" BROAD ABBREVIATION [PMID:23375746] +synonym: "EMT" BROAD OMO:0003000 [PMID:23375746] xref: FMA:295507 xref: TAO:0007010 xref: XAO:0004301 @@ -163729,7 +163729,7 @@ property_value: external_definition "Part of the forebrain that is ventral to th id: UBERON:0014913 name: ventral pallium def: "The pallial region located next to the pallium-subpallium boundary." [DOI:10.1371/journal.pone.0044716] -synonym: "VP" BROAD ABBREVIATION [PMID:23375746] +synonym: "VP" BROAD OMO:0003000 [PMID:23375746] xref: DMBA:15904 is_a: UBERON:0002616 ! regional part of brain relationship: adjacent_to UBERON:0000204 ! ventral part of telencephalon @@ -163814,7 +163814,7 @@ subset: pheno_slim synonym: "perivascular region" EXACT [] synonym: "perivascular spaces" RELATED PLURAL [] synonym: "Virchow-Robin space" EXACT [Wikipedia:Virchow-Robin_space] -synonym: "VRS" BROAD ABBREVIATION [Wikipedia:Virchow-Robin_space] +synonym: "VRS" BROAD OMO:0003000 [Wikipedia:Virchow-Robin_space] xref: NCIT:C83196 xref: SCTID:342298001 xref: UMLS:C0225983 @@ -163868,7 +163868,7 @@ synonym: "cortical marginal layer" EXACT [http://orcid.org/0000-0002-6601-2165] synonym: "cortical marginal zone" EXACT [MP:0000792] synonym: "future cortical layer I" EXACT [http://orcid.org/0000-0002-6601-2165] synonym: "marginal zone" BROAD [PBA:294021774] -synonym: "MZ" BROAD ABBREVIATION [BRAINSPAN:BRAINSPAN, MP:0000792] +synonym: "MZ" BROAD OMO:0003000 [BRAINSPAN:BRAINSPAN, MP:0000792] xref: EMAPA:17546 xref: EMAPA:32713 xref: PBA:294021774 @@ -163892,7 +163892,7 @@ relationship: develops_from UBERON:0004060 ! neural tube ventricular layer id: UBERON:0014940 name: cerebral cortex subventricular zone synonym: "cerebral cortex subventricular zone" RELATED [] -synonym: "SZ" BROAD ABBREVIATION [BRAINSPAN:BRAINSPAN] +synonym: "SZ" BROAD OMO:0003000 [BRAINSPAN:BRAINSPAN] xref: EMAPA:32704 xref: MA:0003188 xref: PBA:294021970 @@ -165658,7 +165658,7 @@ intersection_of: part_of UBERON:0001091 ! calcareous tooth id: UBERON:0015189 name: perineural vascular plexus def: "The capillary bed that initially surrounds the relative avascular brain and spinal cord; the perineural vascular plexus (PNVP) is the precursor to the blood brain barrier formed by angioblasts which migrate away from somites and is recruited to surround the neural tube in response to VEGF; vascularization of the brain and spinal cord occurs via angiogenesis as sprouting vessels from the PNVP invade the neuroepithelium and grow inward toward the ventricular lumen[MP]." [MP:0012732] -synonym: "PNVP" EXACT ABBREVIATION [MGI:anna] +synonym: "PNVP" EXACT OMO:0003000 [MGI:anna] xref: EMAPA:35678 is_a: UBERON:0013141 ! capillary bed relationship: part_of UBERON:0001016 ! nervous system @@ -166112,7 +166112,7 @@ relationship: part_of UBERON:0005604 {source="MA"} ! extrahepatic part of hepati id: UBERON:0015430 name: levator auris longus muscle def: "Muscle organ located on the dorsal surface of the head innervated by the facial nerve." [http://neurolex.org/wiki/Category\:Levator_auris_longus_muscle] -synonym: "LAL" RELATED ABBREVIATION [http://neurolex.org/wiki/Category\:Levator_auris_longus_muscle] +synonym: "LAL" RELATED OMO:0003000 [http://neurolex.org/wiki/Category\:Levator_auris_longus_muscle] synonym: "levator auris longus" EXACT [MA:0002758] xref: EMAPA:36627 xref: MA:0002758 @@ -166986,7 +166986,7 @@ relationship: part_of UBERON:0001130 ! vertebral column id: UBERON:0015855 name: ventral ectodermal ridge def: "A thickening of the surface ectoderm on the ventral side of the embryonic tail which resembles the apical ectodermal ridge of the limb bud." [PMID:7486014] -synonym: "VER" RELATED ABBREVIATION [PMID:7486014] +synonym: "VER" RELATED OMO:0003000 [PMID:7486014] xref: EMAPA:36491 is_a: UBERON:0002050 ! embryonic structure relationship: part_of UBERON:0000076 ! external ectoderm @@ -167818,7 +167818,7 @@ intersection_of: part_of UBERON:0001710 ! lower jaw region id: UBERON:0016454 name: upper central secondary incisor tooth subset: pheno_slim -synonym: "I1" RELATED ABBREVIATION [] +synonym: "I1" RELATED OMO:0003000 [] synonym: "maxillary central permanent incisor tooth" EXACT [] synonym: "maxillary central secondary incisor tooth" EXACT [FMA:55722] synonym: "permanent upper central incisor tooth" RELATED [FMA:55722] @@ -167833,7 +167833,7 @@ intersection_of: part_of UBERON:0007774 ! secondary dentition id: UBERON:0016455 name: upper lateral secondary incisor tooth subset: pheno_slim -synonym: "I2" RELATED ABBREVIATION [] +synonym: "I2" RELATED OMO:0003000 [] synonym: "maxillary lateral secondary incisor tooth" EXACT [FMA:55724] synonym: "upper lateral permanent incisor tooth" EXACT [FMA:55724] xref: FMA:55724 @@ -168910,7 +168910,7 @@ property_value: seeAlso "https://github.com/obophenotype/uberon/issues/479" xsd: id: UBERON:0016619 name: Y-shaped fibrocartilage skeleton of ventral pouch def: "A Y-shaped fibrocartilage structure that lies in the substance of the muscular ventral pouch of rorqual whales." [PMID:845966] -synonym: "YSFS" EXACT ABBREVIATION [] +synonym: "YSFS" EXACT OMO:0003000 [] is_a: UBERON:0007844 ! cartilage element relationship: has_quality PATO:0001201 ! Y-shaped relationship: part_of UBERON:0016618 ! baleen feeding system @@ -168919,7 +168919,7 @@ relationship: part_of UBERON:0016618 ! baleen feeding system id: UBERON:0016620 name: ventral throat pleat synonym: "ventral groove blubber" RELATED [] -synonym: "VGB" RELATED ABBREVIATION [] +synonym: "VGB" RELATED OMO:0003000 [] is_a: UBERON:0006846 ! surface groove relationship: part_of UBERON:0016618 ! baleen feeding system @@ -169058,7 +169058,7 @@ name: supplemental motor cortex def: "The supplementary motor area (SMA) is a part of the sensorimotor cerebral cortex (perirolandic, i.e. on each side of the Rolando or central sulcus). It was included, on purely cytoarchitectonic arguments, in area 6 of Brodmann and the Vogts. It is located on the medial face of the hemisphere, just in front of primary motor cortex. This is an element that appeared late in evolution, in monkeys, linked to the appearance of a true medial pallidum." [Wikipedia:Supplementary_motor_area] subset: pheno_slim synonym: "area F3" RELATED [NeuroNames:3176] -synonym: "jPL (SMC)" BROAD ABBREVIATION [FMA:224858, FMA:CMA] +synonym: "jPL (SMC)" BROAD OMO:0003000 [FMA:224858, FMA:CMA] synonym: "juxtapositional lobule cortex" RELATED [FMA:224858] synonym: "SMA proper" RELATED [NeuroNames:3176] synonym: "supplementary motor area" RELATED [NeuroNames:3176, Wikipedia:Supplementary_motor_area] @@ -169182,7 +169182,7 @@ name: lateral nucleus of trapezoid body def: "One of two potential parts of the trapezoid nucleus. Separated by an indistinct boundary, the other is the medial trapezoid nucleus ( Crosby-1962 ). The existence of the trapezoid nucleus in the human is disputed ( Bazwinsky-2003 )." [NeuroNames:2852] synonym: "lateral nucleus of the trapezoid body" RELATED [NeuroNames:2852] synonym: "lateral trapezoid nucleus" RELATED [NeuroNames:2852] -synonym: "LNTB" EXACT ABBREVIATION [] +synonym: "LNTB" EXACT OMO:0003000 [] xref: DHBA:12459 xref: DMBA:17274 xref: FMA:75730 @@ -169786,7 +169786,7 @@ id: UBERON:0016943 name: lower premolar tooth alt_id: UBERON:4200143 synonym: "lower premolar tooth" EXACT [] -synonym: "LP" BROAD ABBREVIATION [] +synonym: "LP" BROAD OMO:0003000 [] synonym: "mandibular premolar tooth" EXACT [] intersection_of: UBERON:0007120 ! premolar tooth intersection_of: part_of UBERON:0001710 ! lower jaw region @@ -169796,7 +169796,7 @@ id: UBERON:0016944 name: upper premolar tooth alt_id: UBERON:4200144 synonym: "maxillary premolar tooth" EXACT [] -synonym: "UP" BROAD ABBREVIATION [] +synonym: "UP" BROAD OMO:0003000 [] synonym: "upper premolar tooth" EXACT [] intersection_of: UBERON:0007120 ! premolar tooth intersection_of: part_of UBERON:0001709 ! upper jaw region @@ -171627,7 +171627,7 @@ replaced_by: UBERON:0016929 id: UBERON:0018281 name: lower deciduous premolar 5 def: "Fifth premolar (counting anteroposteriorly ) in the lower jaw." [PHENOSCAPE:alex] -synonym: "dp5" RELATED ABBREVIATION [] +synonym: "dp5" RELATED OMO:0003000 [] xref: UBERONTEMP:ebd28885-699a-4637-9112-4ff68ddb6299 is_a: UBERON:0017272 ! lower primary premolar tooth intersection_of: UBERON:0018375 ! deciduous premolar 5 @@ -171801,7 +171801,7 @@ relationship: attaches_to UBERON:0004768 ! bone of lower jaw id: UBERON:0018300 name: upper canine 1 def: "First canine (counting anteroposteriorly) in the upper jaw." [PHENOSCAPE:Alex] -synonym: "UC1" EXACT ABBREVIATION [] +synonym: "UC1" EXACT OMO:0003000 [] synonym: "upper canine UC1" EXACT [] xref: UBERONTEMP:14c28c28-237e-435d-9883-8dff529e64cc is_a: UBERON:0003674 ! cuspid @@ -171811,7 +171811,7 @@ relationship: part_of UBERON:0001709 ! upper jaw region id: UBERON:0018301 name: upper deciduous premolar 5 def: "Fifth premolar (counting anteroposteriorly ) in the upper jaw." [PHENOSCAPE:Alex] -synonym: "dP5" RELATED ABBREVIATION [] +synonym: "dP5" RELATED OMO:0003000 [] xref: UBERONTEMP:ae0e62b6-59ad-4c21-8e15-b67570c5137a is_a: UBERON:0017271 ! upper primary premolar tooth intersection_of: UBERON:0018375 ! deciduous premolar 5 @@ -172995,7 +172995,7 @@ intersection_of: in_lateral_side_of UBERON:0018645 ! incisor region of dentition id: UBERON:0018561 name: upper secondary canine tooth def: "A secondary canine tooth that is part of a upper jaw region." [OBOL:automatic] -synonym: "C" RELATED ABBREVIATION [] +synonym: "C" RELATED OMO:0003000 [] synonym: "maxillary secondary canine tooth" EXACT [FMA:55714] synonym: "permanent upper canine tooth" RELATED [FMA:55714] synonym: "upper permanent canine tooth" EXACT [FMA:55714] @@ -173007,7 +173007,7 @@ intersection_of: part_of UBERON:0001709 ! upper jaw region id: UBERON:0018562 name: lower secondary canine tooth def: "A secondary canine tooth that is part of a lower jaw region." [OBOL:automatic] -synonym: "c" RELATED ABBREVIATION [] +synonym: "c" RELATED OMO:0003000 [] synonym: "lower permanent canine tooth" EXACT [FMA:55715] synonym: "mandibular secondary canine tooth" EXACT [FMA:55715] synonym: "permanent lower canine tooth" RELATED [FMA:55715] @@ -173020,7 +173020,7 @@ id: UBERON:0018568 name: lower central secondary incisor tooth def: "A lower jaw incisor that is in_the_central_side_of a dentition." [OBOL:automatic] subset: pheno_slim -synonym: "i1" RELATED ABBREVIATION [] +synonym: "i1" RELATED OMO:0003000 [] synonym: "lower central permanent incisor tooth" EXACT [FMA:55723] synonym: "mandibular central permanent incisor" EXACT [] synonym: "mandibular central secondary incisor tooth" EXACT [FMA:55723] @@ -173034,7 +173034,7 @@ id: UBERON:0018570 name: lower lateral secondary incisor tooth def: "A lower jaw incisor that is in_the_lateral_side_of a dentition." [OBOL:automatic] subset: pheno_slim -synonym: "i2" RELATED ABBREVIATION [] +synonym: "i2" RELATED OMO:0003000 [] synonym: "lower lateral permanent incisor tooth" EXACT [FMA:55725] synonym: "mandibular lateral permanent incisor" EXACT [] synonym: "mandibular lateral secondary incisor tooth" EXACT [FMA:55725] @@ -173047,7 +173047,7 @@ intersection_of: part_of UBERON:0007774 ! secondary dentition id: UBERON:0018571 name: upper first secondary premolar tooth synonym: "maxillary first secondary premolar tooth" EXACT [FMA:55801] -synonym: "P1" RELATED ABBREVIATION [] +synonym: "P1" RELATED OMO:0003000 [] synonym: "permanent first upper premolar tooth" RELATED [FMA:55801] synonym: "secondary first upper premolar tooth" RELATED [FMA:55801] synonym: "upper first permanent premolar tooth" EXACT [FMA:55801] @@ -173061,7 +173061,7 @@ property_value: editor_note "TODO - tooth numbering nomeculature to be aligned a id: UBERON:0018572 name: upper second secondary premolar tooth synonym: "maxillary second secondary premolar tooth" EXACT [FMA:55802] -synonym: "P2" RELATED ABBREVIATION [] +synonym: "P2" RELATED OMO:0003000 [] synonym: "permanent second upper premolar tooth" RELATED [FMA:55802] synonym: "secondary second upper premolar tooth" RELATED [FMA:55802] synonym: "upper second permanent premolar tooth" EXACT [FMA:55802] @@ -173076,7 +173076,7 @@ id: UBERON:0018573 name: lower first secondary premolar tooth synonym: "lower first permanent premolar tooth" EXACT [FMA:55803] synonym: "mandibular first secondary premolar tooth" EXACT [FMA:55803] -synonym: "p1" RELATED ABBREVIATION [] +synonym: "p1" RELATED OMO:0003000 [] synonym: "permanent first lower premolar tooth" RELATED [FMA:55803] synonym: "secondary first lower premolar tooth" RELATED [FMA:55803] xref: FMA:55803 @@ -173090,7 +173090,7 @@ id: UBERON:0018574 name: lower second secondary premolar tooth synonym: "lower second permanent premolar tooth" EXACT [FMA:55804] synonym: "mandibular second secondary premolar tooth" EXACT [FMA:55804] -synonym: "p2" RELATED ABBREVIATION [] +synonym: "p2" RELATED OMO:0003000 [] synonym: "permanent second lower premolar tooth" RELATED [FMA:55804] synonym: "secondary second lower premolar tooth" RELATED [FMA:55804] xref: FMA:55804 @@ -173102,7 +173102,7 @@ property_value: editor_note "TODO - tooth numbering nomeculature to be aligned a [Term] id: UBERON:0018575 name: upper first secondary molar tooth -synonym: "M1" RELATED ABBREVIATION [] +synonym: "M1" RELATED OMO:0003000 [] synonym: "maxillary first secondary molar tooth" EXACT [FMA:55811] synonym: "upper first permanent molar tooth" EXACT [FMA:55811] xref: FMA:55811 @@ -173114,7 +173114,7 @@ property_value: editor_note "TODO - tooth numbering nomeculature to be aligned a [Term] id: UBERON:0018576 name: upper second secondary molar tooth -synonym: "M2" RELATED ABBREVIATION [] +synonym: "M2" RELATED OMO:0003000 [] synonym: "maxillary second secondary molar tooth" EXACT [FMA:55812] synonym: "upper second permanent tooth" EXACT [FMA:55812] xref: FMA:55812 @@ -173127,7 +173127,7 @@ property_value: editor_note "TODO - tooth numbering nomeculature to be aligned a id: UBERON:0018577 name: upper third secondary molar tooth synonym: "dens serotinus (upper)" EXACT LATIN [FMA:55813, FMA:TA] -synonym: "M3" RELATED ABBREVIATION [] +synonym: "M3" RELATED OMO:0003000 [] synonym: "maxillary third secondary molar tooth" EXACT [FMA:55813] synonym: "permanent third upper molar tooth" RELATED [FMA:55813] synonym: "secondary third upper molar tooth" RELATED [FMA:55813] @@ -173143,7 +173143,7 @@ property_value: editor_note "TODO - tooth numbering nomeculature to be aligned a id: UBERON:0018578 name: lower first secondary molar tooth synonym: "lower first permanent molar tooth" EXACT [FMA:55814] -synonym: "m1" RELATED ABBREVIATION [] +synonym: "m1" RELATED OMO:0003000 [] synonym: "mandibular first secondary molar tooth" EXACT [FMA:55814] xref: FMA:55814 intersection_of: UBERON:0018376 ! molar tooth 1 @@ -173156,7 +173156,7 @@ id: UBERON:0018579 name: lower second secondary molar tooth synonym: "lower second permanent molar tooth" EXACT [FMA:55815] synonym: "lower secondary molar 2" EXACT [] -synonym: "m2" RELATED ABBREVIATION [] +synonym: "m2" RELATED OMO:0003000 [] synonym: "mandibular second secondary molar tooth" EXACT [FMA:55815] xref: FMA:55815 intersection_of: UBERON:0018606 ! molar tooth 2 @@ -173170,7 +173170,7 @@ name: lower third secondary molar tooth synonym: "lower secondary molar 3" EXACT [] synonym: "lower third permanent molar tooth" EXACT [FMA:55817] synonym: "lower wisdom tooth" EXACT [FMA:55817] -synonym: "m3" RELATED ABBREVIATION [] +synonym: "m3" RELATED OMO:0003000 [] synonym: "mandibular third secondary molar tooth" EXACT [FMA:55817] synonym: "secondary third lower molar tooth" RELATED [FMA:55817] xref: FMA:55817 @@ -173202,7 +173202,7 @@ intersection_of: part_of UBERON:0007774 ! secondary dentition [Term] id: UBERON:0018588 name: upper first primary molar tooth -synonym: "dM1" RELATED ABBREVIATION [] +synonym: "dM1" RELATED OMO:0003000 [] synonym: "upper first deciduous molar tooth" EXACT [FMA:84211] synonym: "upper primary tooth D" EXACT [FMA:84211] xref: FMA:84211 @@ -173214,7 +173214,7 @@ property_value: editor_note "TODO - tooth numbering nomeculature to be aligned a [Term] id: UBERON:0018589 name: lower first primary molar tooth -synonym: "dm1" RELATED ABBREVIATION [] +synonym: "dm1" RELATED OMO:0003000 [] synonym: "lower first deciduous molar tooth" EXACT [FMA:84212] synonym: "lower primary molar 1" EXACT [] synonym: "lower primary tooth D" EXACT [FMA:84212] @@ -173239,7 +173239,7 @@ id: UBERON:0018593 name: upper central primary incisor tooth def: "A upper primary canine tooth that is in_the_central_side_of a dentition." [OBOL:automatic] subset: pheno_slim -synonym: "dI1" RELATED ABBREVIATION [] +synonym: "dI1" RELATED OMO:0003000 [] synonym: "upper central deciduous incisor tooth" EXACT [FMA:84216] synonym: "upper primary tooth A" EXACT [FMA:84216] xref: FMA:84216 @@ -173251,7 +173251,7 @@ id: UBERON:0018594 name: upper lateral primary incisor tooth def: "A upper primary canine tooth that is in_the_lateral_side_of a dentition." [OBOL:automatic] subset: pheno_slim -synonym: "dI2" RELATED ABBREVIATION [] +synonym: "dI2" RELATED OMO:0003000 [] synonym: "upper lateral deciduous incisor tooth" EXACT [FMA:84217] synonym: "upper primary tooth B" EXACT [FMA:84217] xref: FMA:84217 @@ -173264,7 +173264,7 @@ name: lower central primary incisor tooth def: "A lower primary incisor tooth that is in_the_central_side_of a dentition." [OBOL:automatic] subset: pheno_slim synonym: "deciduous lower central incisor tooth" RELATED [FMA:84218] -synonym: "di1" RELATED ABBREVIATION [] +synonym: "di1" RELATED OMO:0003000 [] synonym: "lower central deciduous incisor tooth" EXACT [FMA:84218] synonym: "lower primary tooth A" EXACT [FMA:84218] xref: FMA:84218 @@ -173277,7 +173277,7 @@ name: lower lateral primary incisor tooth def: "A lower primary incisor tooth that is in_the_lateral_side_of a dentition." [OBOL:automatic] subset: pheno_slim synonym: "deciduous lower lateral incisor tooth" RELATED [FMA:84219] -synonym: "di2" RELATED ABBREVIATION [] +synonym: "di2" RELATED OMO:0003000 [] synonym: "lower lateral deciduous incisor tooth" EXACT [FMA:84219] synonym: "lower primary tooth B" EXACT [FMA:84219] synonym: "mandibular lateral primary incisor" EXACT [] @@ -173289,7 +173289,7 @@ intersection_of: in_lateral_side_of UBERON:0018645 ! incisor region of dentition id: UBERON:0018597 name: upper primary canine tooth def: "A primary canine tooth that is part of a upper jaw region." [OBOL:automatic] -synonym: "dC" RELATED ABBREVIATION [] +synonym: "dC" RELATED OMO:0003000 [] synonym: "deciduous upper canine tooth" RELATED [FMA:84228] synonym: "upper deciduous canine tooth" EXACT [FMA:84228] synonym: "upper primary tooth C" EXACT [FMA:84228] @@ -173302,7 +173302,7 @@ intersection_of: part_of UBERON:0001709 ! upper jaw region id: UBERON:0018598 name: lower primary canine tooth def: "A primary canine tooth that is part of a lower jaw region." [OBOL:automatic] -synonym: "dc" RELATED ABBREVIATION [] +synonym: "dc" RELATED OMO:0003000 [] synonym: "deciduous lower canine tooth" RELATED [FMA:84229] synonym: "lower deciduous canine tooth" EXACT [FMA:84229] synonym: "lower primary tooth C" EXACT [FMA:84229] @@ -173315,7 +173315,7 @@ intersection_of: part_of UBERON:0001710 ! lower jaw region [Term] id: UBERON:0018599 name: upper second primary molar tooth -synonym: "dM2" RELATED ABBREVIATION [] +synonym: "dM2" RELATED OMO:0003000 [] synonym: "upper primary tooth E" EXACT [FMA:84236] synonym: "upper second deciduous molar tooth" EXACT [FMA:84236] xref: FMA:84236 @@ -173327,7 +173327,7 @@ property_value: editor_note "TODO - tooth numbering nomeculature to be aligned a [Term] id: UBERON:0018600 name: lower second primary molar tooth -synonym: "dm2" RELATED ABBREVIATION [] +synonym: "dm2" RELATED OMO:0003000 [] synonym: "lower primary tooth E" EXACT [FMA:84237] synonym: "lower second deciduous molar tooth" EXACT [FMA:84237] xref: FMA:84237 @@ -174371,21 +174371,21 @@ relationship: part_of UBERON:0002665 {source="FMA"} ! supracallosal gyrus [Term] id: UBERON:0019284 name: rhombomere 9 -synonym: "r9" EXACT ABBREVIATION [DMBA:r9] +synonym: "r9" EXACT OMO:0003000 [DMBA:r9] xref: DMBA:17476 is_a: UBERON:0001892 ! rhombomere [Term] id: UBERON:0019285 name: rhombomere 10 -synonym: "r10" EXACT ABBREVIATION [DMBA:r10] +synonym: "r10" EXACT OMO:0003000 [DMBA:r10] xref: DMBA:17538 is_a: UBERON:0001892 ! rhombomere [Term] id: UBERON:0019286 name: rhombomere 11 -synonym: "r11" EXACT ABBREVIATION [DMBA:r11] +synonym: "r11" EXACT OMO:0003000 [DMBA:r11] xref: DMBA:17596 is_a: UBERON:0001892 ! rhombomere @@ -174451,7 +174451,7 @@ intersection_of: part_of UBERON:0001893 ! telencephalon id: UBERON:0019295 name: caudal intralaminar nuclear group synonym: "caudal group of intralaminar nuclei" EXACT [HBA:ILc] -synonym: "ILc" RELATED ABBREVIATION [HBA:ILc] +synonym: "ILc" RELATED OMO:0003000 [HBA:ILc] synonym: "posterior group of intralaminar nuclei" EXACT [DHBA:PILN] synonym: "posterior intralaminar nucleus of the thalamus" RELATED [NeuroNames:1762] synonym: "posterior intralaminar thalamic nucleus" RELATED [NeuroNames:1762] @@ -174502,7 +174502,7 @@ intersection_of: part_of UBERON:0007827 ! external nose id: UBERON:0019308 name: septohypothalamic nucleus def: "A group of cells located between the lateral septal nucleus and the anterior commissure in the mouse ( Paxinos-2001 ). Some authors regard it as part of the lateral septal nucleus ( Swanson-1998 )." [neuronames:1175] -synonym: "SHy" RELATED ABBREVIATION [DHBA:SHy] +synonym: "SHy" RELATED OMO:0003000 [DHBA:SHy] xref: DHBA:13033 xref: DMBA:15761 xref: neuronames:1175 @@ -174810,7 +174810,7 @@ relationship: part_of UBERON:0001897 ! dorsal plus ventral thalamus [Term] id: UBERON:0022244 name: anterior orbital gyrus -synonym: "AOrG" RELATED ABBREVIATION [HBA:AOrG] +synonym: "AOrG" RELATED OMO:0003000 [HBA:AOrG] xref: FMA:256196 xref: HBA:4053 xref: SCTID:279196000 @@ -174833,7 +174833,7 @@ relationship: part_of UBERON:0011299 {source="HBA"} ! white matter of telencepha [Term] id: UBERON:0022247 name: forebrain ipsilateral fiber tracts -synonym: "FIFT" RELATED ABBREVIATION [DHBA:FIFT] +synonym: "FIFT" RELATED OMO:0003000 [DHBA:FIFT] xref: DHBA:10568 is_a: UBERON:0001019 ! nerve fasciculus relationship: part_of UBERON:0019261 {source="DHBA"} ! white matter of forebrain @@ -174935,7 +174935,7 @@ relationship: part_of UBERON:0022247 {source="DHBA"} ! forebrain ipsilateral fib [Term] id: UBERON:0022258 name: endolemniscal nucleus -synonym: "EL" RELATED ABBREVIATION [HBA:EL] +synonym: "EL" RELATED OMO:0003000 [HBA:EL] xref: DHBA:12648 xref: FMA:77099 xref: HBA:9548 @@ -175004,7 +175004,7 @@ relationship: part_of UBERON:0022247 {source="DHBA"} ! forebrain ipsilateral fib id: UBERON:0022268 name: planum temporale def: "The planum temporale is the cortical area just posterior to the auditory cortex within the Sylvian fissure. It is a triangular region which forms the heart of Wernicke's area, one of the most important functional areas for language. The planum temporale shows a significant asymmetry. In 65% of all individuals the left planum temporale appears to be more developed, while the right planum temporale is more developed in only 10%. In some peoplebs brains, the planum temporale is more than five times larger on the left than on the right, making it the most asymmetrical structure in the brain. This greater size of the left planum temporale compared with the right is already present in the foetus, where it can be observed starting from the 31st week of gestation. This observation strengthens the hypothesis of a genetic predisposition for brain asymmetry." [http://neuro.imm.dtu.dk/wiki/Planum_temporale, Wikipedia:Planum_temporale] -synonym: "PLT" RELATED ABBREVIATION [HBA:PLT] +synonym: "PLT" RELATED OMO:0003000 [HBA:PLT] xref: DHBA:12145 xref: HBA:4171 xref: neuronames:2333 @@ -175041,7 +175041,7 @@ id: UBERON:0022272 name: corticobulbar tract def: "The corticobulbar (or corticonuclear) tract is a white matter pathway connecting the cerebral cortex to the brainstem. The term 'bulbar' refers to the brainstem, as 'bulb' was a historical term meaning the area currently called the brainstem. The 'bulb' is an archaic term for the medulla oblongata. In clinical usage, it includes the pons as well." [Wikipedia:Corticobulbar_tract] synonym: "bulbar" RELATED [Wikipedia:Corticobulbar_tract] -synonym: "cbu-h" RELATED ABBREVIATION [DHBA:cbu-h] +synonym: "cbu-h" RELATED OMO:0003000 [DHBA:cbu-h] synonym: "cortico-bulbar tract" RELATED [Wikipedia:Corticobulbar_tract] synonym: "corticobulbar" RELATED [Wikipedia:Corticobulbar_tract] synonym: "corticobulbar axons" RELATED [Wikipedia:Corticobulbar_tract] @@ -175502,7 +175502,7 @@ relationship: part_of UBERON:0002728 {source="nlx"} ! entorhinal cortex id: UBERON:0022326 name: molecular layer of dorsal cochlear nucleus synonym: "dorsal cochlear nucleus molecular layer" RELATED [NLX:89] -synonym: "MoC" RELATED ABBREVIATION [] +synonym: "MoC" RELATED OMO:0003000 [] xref: NLX:89 is_a: UBERON:0022303 {source="nlx"} ! nervous system cell part layer relationship: part_of UBERON:0002829 {source="nlx"} ! dorsal cochlear nucleus @@ -175544,7 +175544,7 @@ id: UBERON:0022336 name: entorhinal cortex layer 1 def: "Layer of the entorhinal cortex that is most superficial, continuous with layer 1 of adjacent neocortex and the molecular layer of the subiculum, lying deep to the pial layer and superficial to layer 2. It is relatively acellular consisting mostly of fibers running transversely relative to the cortical surface (Adapted from Paxinos, G. The rat central nervous system, 2nd ed, Academic Press, San Diego, 1995, pg. 474)." [NLXANAT:090820] subset: defined_by_cytoarchitecture -synonym: "EC layer 1" RELATED ABBREVIATION [] +synonym: "EC layer 1" RELATED OMO:0003000 [] synonym: "entorhinal cortex layer I" RELATED [NLXANAT:090820] synonym: "entorhinal cortex molecular layer" RELATED [NLXANAT:090820] synonym: "layer I of entorhinal cortex" RELATED [NLXANAT:090820] @@ -175562,7 +175562,7 @@ property_value: external_ontology_notes "the two NIFSTD classes appear to refer id: UBERON:0022337 name: entorhinal cortex layer 2 def: "Layer of the entorhinal cortex lying superficial to layer 3 and deep to layer 1. It is characterized by medium-to large sized stellate cells that are grouped into prominent clusters, particularly in the rostral entorhinal cortex (Adapted from Paxinos, G. The rat central nervous system, 2nd ed, Academic Press, San Diego, 1995, pg. 474)." [NLXANAT:090821] -synonym: "EC layer 2" RELATED ABBREVIATION [] +synonym: "EC layer 2" RELATED OMO:0003000 [] synonym: "entorhinal cortex layer II" RELATED [NLXANAT:090821] synonym: "layer 2 of entorhinal cortex" RELATED [NLXANAT:090821] synonym: "layer II of entorhinal cortex" RELATED [NLXANAT:090821] @@ -175751,7 +175751,7 @@ relationship: part_of UBERON:0003258 ! endoderm of foregut [Term] id: UBERON:0022364 name: occipital fusiform gyrus -synonym: "FuGo" RELATED ABBREVIATION [DHBA:12152] +synonym: "FuGo" RELATED OMO:0003000 [DHBA:12152] synonym: "occipital fusiform gyrus (OF)" EXACT [FMA:71033] synonym: "occipitotemporal (fusiform) gyrus, occipital part" EXACT [DHBA:12152] xref: DHBA:12152 @@ -175784,7 +175784,7 @@ relationship: source_atlas Harvard-Oxford:Atlas id: UBERON:0022383 name: anterior parahippocampal gyrus def: "The part of the parahippocampal gyrus that includes the perirhinal and entorhinal cortices." [Wikipedia:Parahippocampal_gyrus] -synonym: "APH" RELATED ABBREVIATION [DHBA:12163] +synonym: "APH" RELATED OMO:0003000 [DHBA:12163] synonym: "parahippocampal gyrus, anterior division" EXACT [http://orcid.org/0000-0001-6755-0259] xref: DHBA:12163 xref: FMA:71039 @@ -175804,7 +175804,7 @@ intersection_of: part_of UBERON:0002657 ! posterior parahippocampal gyrus [Term] id: UBERON:0022395 name: temporal fusiform gyrus -synonym: "FuGt" RELATED ABBREVIATION [DHBA:12143] +synonym: "FuGt" RELATED OMO:0003000 [DHBA:12143] synonym: "occipitotemporal (fusiform) gyrus, temporal part" EXACT [DHBA:12143] xref: DHBA:12143 is_a: UBERON:0002616 ! regional part of brain @@ -175831,7 +175831,7 @@ relationship: source_atlas Harvard-Oxford:Atlas [Term] id: UBERON:0022398 name: paracingulate gyrus -synonym: "PaCG" RELATED ABBREVIATION [DHBA:146034872] +synonym: "PaCG" RELATED OMO:0003000 [DHBA:146034872] synonym: "paracingulate gyrus (PAC)" EXACT [FMA:71037] xref: DHBA:146034872 xref: FMA:71037 @@ -175851,7 +175851,7 @@ id: UBERON:0022421 name: pontocerebellar tract def: "The second order neuron fibers of the corticopontocerebellar tracts that cross to the other side of the pons and run within the middle cerebellar peduncles, from the pons to the contralateral cerebellum." [Wikipedia:Pontocerebellar_fibers] synonym: "fibrae pontocerebellaris" EXACT LATIN [Wikipedia:Pontocerebellar_fibers] -synonym: "pncb" RELATED ABBREVIATION [DHBA:12769] +synonym: "pncb" RELATED OMO:0003000 [DHBA:12769] synonym: "pontine crossing tract" EXACT [http://orcid.org/0000-0002-6601-2165] synonym: "pontocerebellar fibers" EXACT [NeuroNames:1345] synonym: "tractus pontocerebellaris" EXACT LATIN [NeuroNames:1345] @@ -175870,7 +175870,7 @@ name: sagulum nucleus def: "A collection of principally small and medium-sized cells in the midbrain tegmentum lying at the margin of the midbrain adjacent to the nuclei of the lateral lemniscus." [NLX:64080] synonym: "nucleus saguli" EXACT LATIN [FMA:77492, FMA:TA] synonym: "nucleus sagulum" RELATED LATIN [NeuroNames:1308, NLX:64080] -synonym: "Sag" RELATED ABBREVIATION [HBA:9486] +synonym: "Sag" RELATED OMO:0003000 [HBA:9486] synonym: "sagular nucleus" RELATED [] synonym: "sagulum" RELATED LATIN [NeuroNames:1308] xref: DHBA:12313 @@ -175885,7 +175885,7 @@ relationship: part_of UBERON:0002314 {source="HBA"} ! midbrain tectum id: UBERON:0022424 name: supragenual nucleus of pontine tegmentum def: "A group of neurons embedded in the pontine central gray of the pontine tegmentum. Located dorsal to the internal genu of the facial nerve, it is found in the human ( Paxinos-2012 ), the macaque ( Paxinos-2009a ), the rat ( Swanson-2004 ), and the mouse ( Franklin-2008 ). Functionally it is part of the dorsal pontine gray of the subcortical motor system ( Swanson-2004 )." [NeuroNames:1981] -synonym: "SGe" RELATED ABBREVIATION [DHBA:12662] +synonym: "SGe" RELATED OMO:0003000 [DHBA:12662] synonym: "supragenual nucleus" EXACT [NeuroNames:1981] xref: DHBA:12662 xref: DMBA:17190 @@ -175897,7 +175897,7 @@ relationship: part_of UBERON:0003023 {source="DHBA", source="Neuronames-def"} ! id: UBERON:0022425 name: anterior corona radiata synonym: "anterior portion of corona radiata" EXACT [DHBA:15541] -synonym: "cor-a" RELATED ABBREVIATION [DHBA:15541] +synonym: "cor-a" RELATED OMO:0003000 [DHBA:15541] xref: DHBA:15541 is_a: UBERON:0002616 ! regional part of brain disjoint_from: UBERON:0022427 {source="lexical"} ! posterior corona radiata @@ -175907,7 +175907,7 @@ relationship: source_atlas http://neuro.debian.net/pkgs/fsl-jhu-dti-whitematter- [Term] id: UBERON:0022426 name: superior corona radiata -synonym: "cor-s" RELATED ABBREVIATION [DHBA:15542] +synonym: "cor-s" RELATED OMO:0003000 [DHBA:15542] synonym: "superior portion of corona radiata" EXACT [DHBA:15542] xref: DHBA:15542 is_a: UBERON:0002616 ! regional part of brain @@ -175917,7 +175917,7 @@ relationship: source_atlas http://neuro.debian.net/pkgs/fsl-jhu-dti-whitematter- [Term] id: UBERON:0022427 name: posterior corona radiata -synonym: "cor-p" RELATED ABBREVIATION [DHBA:15543] +synonym: "cor-p" RELATED OMO:0003000 [DHBA:15543] synonym: "posterior portion of corona radiata" EXACT [DHBA:15543] xref: DHBA:15543 is_a: UBERON:0002616 ! regional part of brain @@ -175927,7 +175927,7 @@ relationship: source_atlas http://neuro.debian.net/pkgs/fsl-jhu-dti-whitematter- [Term] id: UBERON:0022428 name: cingulate cortex cingulum -synonym: "cb-cx" RELATED ABBREVIATION [DHBA:15539] +synonym: "cb-cx" RELATED OMO:0003000 [DHBA:15539] synonym: "cingulum (cingulate gyrus)" EXACT [] synonym: "cingulum bundle in cingulate cortex" EXACT [DHBA:15539] synonym: "cingulum bundle in cingulate gyrus" EXACT [] @@ -175938,7 +175938,7 @@ intersection_of: part_of UBERON:0003027 ! cingulate cortex [Term] id: UBERON:0022429 name: temporal cortex cingulum -synonym: "cb-tx" RELATED ABBREVIATION [DHBA:15540] +synonym: "cb-tx" RELATED OMO:0003000 [DHBA:15540] synonym: "cingulum (temporal gyrus)" EXACT [] synonym: "cingulum bundle in temporal cortex" EXACT [DHBA:15540] synonym: "cingulum bundle in temporal gyrus" EXACT [] @@ -175959,7 +175959,7 @@ intersection_of: part_of UBERON:0001954 ! Ammon's horn id: UBERON:0022431 name: obsolete simian fossa (macaque) synonym: "fossa simiarum" RELATED LATIN [BIRNLEX:1616, NeuroNames:46] -synonym: "FS" BROAD ABBREVIATION [BIRNLEX:1616] +synonym: "FS" BROAD OMO:0003000 [BIRNLEX:1616] synonym: "simian fossa" EXACT HUMAN_PREFERRED [BIRNLEX:1616] synonym: "simian fossa" RELATED [NeuroNames:46] is_obsolete: true @@ -175987,8 +175987,8 @@ property_value: terminology_notes "many sources refer to this simply as the 'sup id: UBERON:0022437 name: dorsal periolivary nucleus def: "." [Wikipedia:Superior_olivary_complex#Dorsal_periolivary_nucleus_.28DPO.29] -synonym: "DPeO" RELATED ABBREVIATION [DMBA:17260] -synonym: "DPO" RELATED ABBREVIATION [] +synonym: "DPeO" RELATED OMO:0003000 [DMBA:17260] +synonym: "DPO" RELATED OMO:0003000 [] synonym: "nuclei periolivares" BROAD LATIN [FMA:TA] synonym: "peri-olivary nuclei" BROAD [FMA:72475] xref: DHBA:15561 @@ -176012,7 +176012,7 @@ relationship: part_of UBERON:0009835 {source="NIFSTD"} ! anterior cingulate cort id: UBERON:0022453 name: olfactory entorhinal cortex def: "A part of the entorhinal area defined on the basis of connectivity. It is the rostral portion, which receives a projection from the olfactory bulb (Price-90)-Adapted from Brain Info." [BIRNLEX:2705] -synonym: "EOl" RELATED ABBREVIATION [BIRNLEX:2705] +synonym: "EOl" RELATED OMO:0003000 [BIRNLEX:2705] xref: BIRNLEX:2705 xref: neuronames:2274 is_a: UBERON:0002616 ! regional part of brain @@ -179826,7 +179826,7 @@ relationship: part_of UBERON:0002422 ! fourth ventricle id: UBERON:0034673 name: amygdalohippocampal area def: "A cytoarchitecturally defined portion of the periamygdalar area and the cortical amygdalar nucleus at the caudal extreme of the amygdala." [Wikipedia:Amygdalohippocampal_area] -synonym: "AHA" RELATED ABBREVIATION [DHBA:10377] +synonym: "AHA" RELATED OMO:0003000 [DHBA:10377] synonym: "amygdalo-hippocampal area" RELATED [NeuroNames:2028] synonym: "amygdalohippocampal area" RELATED [NeuroNames:2028] synonym: "amygdalohippocampal transition area" RELATED [NeuroNames:2028] @@ -179855,7 +179855,7 @@ property_value: taxon_notes "All authors regard it as occupying the caudal third id: UBERON:0034674 name: sulcus of limbic lobe synonym: "intralimbic sulcus" RELATED [NeuroNames:1314] -synonym: "LLs" RELATED ABBREVIATION [HBA:9393] +synonym: "LLs" RELATED OMO:0003000 [HBA:9393] xref: HBA:9393 xref: neuronames:1314 is_a: UBERON:0013118 ! sulcus of brain @@ -179864,7 +179864,7 @@ relationship: part_of UBERON:0002600 ! limbic lobe [Term] id: UBERON:0034676 name: forceps major of corpus callosum -synonym: "ccs-ma" RELATED ABBREVIATION [DHBA:12025] +synonym: "ccs-ma" RELATED OMO:0003000 [DHBA:12025] synonym: "corpus callosum, forceps major" RELATED LATIN [NeuroNames:197] synonym: "corpus callosum, posterior forceps (Arnold)" RELATED [NeuroNames:197] synonym: "forceps major" EXACT [FMA:TA] @@ -180086,7 +180086,7 @@ relationship: has_part CL:0000031 ! neuroblast (sensu Vertebrata) id: UBERON:0034708 name: cerebellum marginal layer synonym: "marginal zone of cerebellum" EXACT [DHBA:12695] -synonym: "MZCB" RELATED ABBREVIATION [DHBA:12695] +synonym: "MZCB" RELATED OMO:0003000 [DHBA:12695] xref: DHBA:12695 xref: EHDAA2:0001152 xref: EMAPA:17789 @@ -180098,7 +180098,7 @@ property_value: development_notes "In the cerebellum, some neuronal precursors e id: UBERON:0034709 name: hindbrain marginal layer synonym: "marginal zone of hindbrain" EXACT [DHBA:12694] -synonym: "MZH" RELATED ABBREVIATION [DHBA:12694] +synonym: "MZH" RELATED OMO:0003000 [DHBA:12694] xref: DHBA:12694 xref: EMAPA:32916 intersection_of: UBERON:0004062 ! neural tube marginal layer @@ -180351,7 +180351,7 @@ def: "The inferior longitudinal fasciculus connects the temporal lobe and occipi synonym: "external sagittal stratum" RELATED [NeuroNames:1443] synonym: "fasciculus fronto-occipitalis inferior" RELATED LATIN [NeuroNames:1443] synonym: "fasciculus longitudinalis inferior" RELATED LATIN [NeuroNames:1443] -synonym: "ilf" RELATED ABBREVIATION [DHBA:10580] +synonym: "ilf" RELATED OMO:0003000 [DHBA:10580] xref: DHBA:10580 xref: FMA:77632 xref: HBA:9260 @@ -180380,7 +180380,7 @@ synonym: "anterior radiation of thalamus" EXACT [FMA:76976] synonym: "anterior thalamic radiation" EXACT [FMA:76976] synonym: "anterior thalamic radiation" RELATED [NeuroNames:1726] synonym: "anterior thalamic radiations" RELATED [NeuroNames:1726] -synonym: "athf" RELATED ABBREVIATION [DHBA:12043] +synonym: "athf" RELATED OMO:0003000 [DHBA:12043] synonym: "radiatio thalami anterior" EXACT [FMA:TA] synonym: "radiationes thalamicae anteriores" RELATED LATIN [NeuroNames:1726] xref: DHBA:12043 @@ -180396,7 +180396,7 @@ name: posterior thalamic radiation synonym: "posterior thalamic radiation" EXACT [FMA:76982] synonym: "posterior thalamic radiation" RELATED [NeuroNames:2083] synonym: "posterior thalamic radiations" RELATED [NeuroNames:2083] -synonym: "pthr" RELATED ABBREVIATION [DHBA:12053] +synonym: "pthr" RELATED OMO:0003000 [DHBA:12053] synonym: "radiatio posterior thalami" EXACT [FMA:TA] synonym: "radiatio thalamica posterior" EXACT [FMA:TA] synonym: "radiationes thalamicae posteriores" RELATED LATIN [NeuroNames:2083] @@ -180440,7 +180440,7 @@ relationship: capable_of_part_of GO:0007601 ! visual perception id: UBERON:0034751 name: primary auditory cortex def: "The part of the auditory cortex that is located on the superior temporal gyrus in the temporal lobe and receives point-to-point input from the ventral division of the medial geniculate complex." [http://www.ncbi.nlm.nih.gov/books/NBK10900/] -synonym: "A1C" RELATED ABBREVIATION [DHBA:10236] +synonym: "A1C" RELATED OMO:0003000 [DHBA:10236] synonym: "auditory complex area A1" RELATED [NCBIBook:NBK10900] synonym: "auditory core region" RELATED [NeuroNames:1354] synonym: "primary auditory area" RELATED [NeuroNames:1354] @@ -180457,7 +180457,7 @@ relationship: part_of UBERON:0001393 {source="cjm"} ! auditory cortex id: UBERON:0034752 name: secondary auditory cortex def: "The part of the auditory cortex that receive more diffuse input from the belt areas of the medial geniculate complex." [http://www.ncbi.nlm.nih.gov/books/NBK10900/] -synonym: "A42" RELATED ABBREVIATION [DHBA:10239] +synonym: "A42" RELATED OMO:0003000 [DHBA:10239] synonym: "belt area of auditory complex" RELATED [NCBIBook:NBK10900] synonym: "belt auditory area" EXACT [FMA:272944] synonym: "peripheral auditory cortex" EXACT [FMA:272944] @@ -180491,7 +180491,7 @@ id: UBERON:0034754 name: occipitofrontal fasciculus def: "The occipitofrontal fasciculus passes backward from the frontal lobe, along the lateral border of the caudate nucleus, and on the medial aspect of the corona radiata; its fibers radiate in a fan-like manner and pass into the occipital and temporal lobes lateral to the posterior and inferior cornua." [Wikipedia:Occipitofrontal_fasciculus] synonym: "inferior occipitofrontal fasciculus" RELATED [Wikipedia:Occipitofrontal_fasciculus] -synonym: "off" RELATED ABBREVIATION [DHBA:10588] +synonym: "off" RELATED OMO:0003000 [DHBA:10588] xref: DHBA:10588 xref: HBA:9269 xref: Wikipedia:Occipitofrontal_fasciculus @@ -180632,7 +180632,7 @@ relationship: part_of UBERON:0002973 {source="DHBA"} ! parahippocampal gyrus [Term] id: UBERON:0034774 name: uncal CA1 -synonym: "CA1U" RELATED ABBREVIATION [DHBA:266441267] +synonym: "CA1U" RELATED OMO:0003000 [DHBA:266441267] xref: DHBA:266441267 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0003881 {source="DHBA"} ! CA1 field of hippocampus @@ -180640,7 +180640,7 @@ relationship: part_of UBERON:0003881 {source="DHBA"} ! CA1 field of hippocampus [Term] id: UBERON:0034775 name: uncal CA2 -synonym: "CA2U" RELATED ABBREVIATION [DHBA:266441311] +synonym: "CA2U" RELATED OMO:0003000 [DHBA:266441311] xref: DHBA:266441311 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0003882 {source="DHBA"} ! CA2 field of hippocampus @@ -180648,7 +180648,7 @@ relationship: part_of UBERON:0003882 {source="DHBA"} ! CA2 field of hippocampus [Term] id: UBERON:0034776 name: uncal CA3 -synonym: "CA3U" RELATED ABBREVIATION [DHBA:266441355] +synonym: "CA3U" RELATED OMO:0003000 [DHBA:266441355] xref: DHBA:266441355 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0003883 {source="DHBA"} ! CA3 field of hippocampus @@ -180656,7 +180656,7 @@ relationship: part_of UBERON:0003883 {source="DHBA"} ! CA3 field of hippocampus [Term] id: UBERON:0034777 name: rostral CA1 -synonym: "CA1R" RELATED ABBREVIATION [DHBA:11275] +synonym: "CA1R" RELATED OMO:0003000 [DHBA:11275] xref: DHBA:11275 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0003881 {source="DHBA"} ! CA1 field of hippocampus @@ -180664,7 +180664,7 @@ relationship: part_of UBERON:0003881 {source="DHBA"} ! CA1 field of hippocampus [Term] id: UBERON:0034778 name: rostral CA2 -synonym: "CA2R" RELATED ABBREVIATION [DHBA:11285] +synonym: "CA2R" RELATED OMO:0003000 [DHBA:11285] xref: DHBA:11285 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0003882 {source="DHBA"} ! CA2 field of hippocampus @@ -180672,7 +180672,7 @@ relationship: part_of UBERON:0003882 {source="DHBA"} ! CA2 field of hippocampus [Term] id: UBERON:0034779 name: rostral CA3 -synonym: "CA3R" RELATED ABBREVIATION [DHBA:11295] +synonym: "CA3R" RELATED OMO:0003000 [DHBA:11295] xref: DHBA:11295 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0003883 {source="DHBA"} ! CA3 field of hippocampus @@ -180680,7 +180680,7 @@ relationship: part_of UBERON:0003883 {source="DHBA"} ! CA3 field of hippocampus [Term] id: UBERON:0034780 name: caudal CA1 -synonym: "CA1C" RELATED ABBREVIATION [DHBA:11280] +synonym: "CA1C" RELATED OMO:0003000 [DHBA:11280] xref: DHBA:11280 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0003881 {source="DHBA"} ! CA1 field of hippocampus @@ -180688,7 +180688,7 @@ relationship: part_of UBERON:0003881 {source="DHBA"} ! CA1 field of hippocampus [Term] id: UBERON:0034781 name: caudal CA2 -synonym: "CA2C" RELATED ABBREVIATION [DHBA:11290] +synonym: "CA2C" RELATED OMO:0003000 [DHBA:11290] xref: DHBA:11290 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0003882 {source="DHBA"} ! CA2 field of hippocampus @@ -180696,7 +180696,7 @@ relationship: part_of UBERON:0003882 {source="DHBA"} ! CA2 field of hippocampus [Term] id: UBERON:0034782 name: caudal CA3 -synonym: "CA3C" RELATED ABBREVIATION [DHBA:11301] +synonym: "CA3C" RELATED OMO:0003000 [DHBA:11301] xref: DHBA:11301 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0003883 {source="DHBA"} ! CA3 field of hippocampus @@ -180704,7 +180704,7 @@ relationship: part_of UBERON:0003883 {source="DHBA"} ! CA3 field of hippocampus [Term] id: UBERON:0034798 name: stratum lacunosum-moleculare of caudal CA1 -synonym: "CA1Cslm" RELATED ABBREVIATION [DHBA:11281] +synonym: "CA1Cslm" RELATED OMO:0003000 [DHBA:11281] xref: DHBA:11281 intersection_of: UBERON:0014567 ! layer of hippocampal field intersection_of: part_of UBERON:0007640 ! hippocampus stratum lacunosum moleculare @@ -180713,7 +180713,7 @@ intersection_of: part_of UBERON:0034780 ! caudal CA1 [Term] id: UBERON:0034799 name: stratum radiatum of caudal CA1 -synonym: "CA1Csr" RELATED ABBREVIATION [DHBA:11282] +synonym: "CA1Csr" RELATED OMO:0003000 [DHBA:11282] xref: DHBA:11282 intersection_of: UBERON:0014567 ! layer of hippocampal field intersection_of: part_of UBERON:0005372 ! hippocampus stratum radiatum @@ -180722,7 +180722,7 @@ intersection_of: part_of UBERON:0034780 ! caudal CA1 [Term] id: UBERON:0034800 name: stratum pyramidale of caudal CA1 -synonym: "CA1Csp" RELATED ABBREVIATION [DHBA:11283] +synonym: "CA1Csp" RELATED OMO:0003000 [DHBA:11283] xref: DHBA:11283 intersection_of: UBERON:0014567 ! layer of hippocampal field intersection_of: part_of UBERON:0002313 ! hippocampus pyramidal layer @@ -180731,7 +180731,7 @@ intersection_of: part_of UBERON:0034780 ! caudal CA1 [Term] id: UBERON:0034801 name: stratum oriens of caudal CA1 -synonym: "CA1Cso" RELATED ABBREVIATION [DHBA:11284] +synonym: "CA1Cso" RELATED OMO:0003000 [DHBA:11284] xref: DHBA:11284 intersection_of: UBERON:0014567 ! layer of hippocampal field intersection_of: part_of UBERON:0005371 ! hippocampus stratum oriens @@ -180740,7 +180740,7 @@ intersection_of: part_of UBERON:0034780 ! caudal CA1 [Term] id: UBERON:0034803 name: stratum lacunosum-moleculare of caudal CA2 -synonym: "CA2Cslm" RELATED ABBREVIATION [DHBA:11291] +synonym: "CA2Cslm" RELATED OMO:0003000 [DHBA:11291] xref: DHBA:11291 intersection_of: UBERON:0014567 ! layer of hippocampal field intersection_of: part_of UBERON:0007640 ! hippocampus stratum lacunosum moleculare @@ -180749,7 +180749,7 @@ intersection_of: part_of UBERON:0034781 ! caudal CA2 [Term] id: UBERON:0034804 name: stratum radiatum of caudal CA2 -synonym: "CA2Csr" RELATED ABBREVIATION [DHBA:11292] +synonym: "CA2Csr" RELATED OMO:0003000 [DHBA:11292] xref: DHBA:11292 intersection_of: UBERON:0014567 ! layer of hippocampal field intersection_of: part_of UBERON:0005372 ! hippocampus stratum radiatum @@ -180758,7 +180758,7 @@ intersection_of: part_of UBERON:0034781 ! caudal CA2 [Term] id: UBERON:0034805 name: stratum pyramidale of caudal CA2 -synonym: "CA2Csp" RELATED ABBREVIATION [DHBA:11293] +synonym: "CA2Csp" RELATED OMO:0003000 [DHBA:11293] xref: DHBA:11293 intersection_of: UBERON:0014567 ! layer of hippocampal field intersection_of: part_of UBERON:0002313 ! hippocampus pyramidal layer @@ -180767,7 +180767,7 @@ intersection_of: part_of UBERON:0034781 ! caudal CA2 [Term] id: UBERON:0034806 name: stratum oriens of caudal CA2 -synonym: "CA2Cso" RELATED ABBREVIATION [DHBA:11294] +synonym: "CA2Cso" RELATED OMO:0003000 [DHBA:11294] xref: DHBA:11294 intersection_of: UBERON:0014567 ! layer of hippocampal field intersection_of: part_of UBERON:0005371 ! hippocampus stratum oriens @@ -180776,7 +180776,7 @@ intersection_of: part_of UBERON:0034781 ! caudal CA2 [Term] id: UBERON:0034808 name: stratum lacunosum-moleculare of caudal CA3 -synonym: "CA3Cslm" RELATED ABBREVIATION [DHBA:11302] +synonym: "CA3Cslm" RELATED OMO:0003000 [DHBA:11302] xref: DHBA:11302 intersection_of: UBERON:0014567 ! layer of hippocampal field intersection_of: part_of UBERON:0007640 ! hippocampus stratum lacunosum moleculare @@ -180785,7 +180785,7 @@ intersection_of: part_of UBERON:0034782 ! caudal CA3 [Term] id: UBERON:0034809 name: stratum radiatum of caudal CA3 -synonym: "CA3Csr" RELATED ABBREVIATION [DHBA:11303] +synonym: "CA3Csr" RELATED OMO:0003000 [DHBA:11303] xref: DHBA:11303 intersection_of: UBERON:0014567 ! layer of hippocampal field intersection_of: part_of UBERON:0005372 ! hippocampus stratum radiatum @@ -180794,7 +180794,7 @@ intersection_of: part_of UBERON:0034782 ! caudal CA3 [Term] id: UBERON:0034810 name: stratum lucidum of caudal CA3 -synonym: "CA3Csl" RELATED ABBREVIATION [DHBA:11304] +synonym: "CA3Csl" RELATED OMO:0003000 [DHBA:11304] xref: DHBA:11304 intersection_of: UBERON:0014567 ! layer of hippocampal field intersection_of: part_of UBERON:0007637 ! hippocampus stratum lucidum @@ -180803,7 +180803,7 @@ intersection_of: part_of UBERON:0034782 ! caudal CA3 [Term] id: UBERON:0034811 name: stratum pyramidale of caudal CA3 -synonym: "CA3Csp" RELATED ABBREVIATION [DHBA:11305] +synonym: "CA3Csp" RELATED OMO:0003000 [DHBA:11305] xref: DHBA:11305 intersection_of: UBERON:0014567 ! layer of hippocampal field intersection_of: part_of UBERON:0002313 ! hippocampus pyramidal layer @@ -180812,7 +180812,7 @@ intersection_of: part_of UBERON:0034782 ! caudal CA3 [Term] id: UBERON:0034812 name: stratum oriens of caudal CA3 -synonym: "CA3Cso" RELATED ABBREVIATION [DHBA:11306] +synonym: "CA3Cso" RELATED OMO:0003000 [DHBA:11306] xref: DHBA:11306 intersection_of: UBERON:0014567 ! layer of hippocampal field intersection_of: part_of UBERON:0005371 ! hippocampus stratum oriens @@ -180821,7 +180821,7 @@ intersection_of: part_of UBERON:0034782 ! caudal CA3 [Term] id: UBERON:0034828 name: stratum lacunosum-moleculare of rostral CA1 -synonym: "CA1Rslm" RELATED ABBREVIATION [DHBA:11276] +synonym: "CA1Rslm" RELATED OMO:0003000 [DHBA:11276] xref: DHBA:11276 intersection_of: UBERON:0014567 ! layer of hippocampal field intersection_of: part_of UBERON:0007640 ! hippocampus stratum lacunosum moleculare @@ -180830,7 +180830,7 @@ intersection_of: part_of UBERON:0034777 ! rostral CA1 [Term] id: UBERON:0034829 name: stratum radiatum of rostral CA1 -synonym: "CA1Rsr" RELATED ABBREVIATION [DHBA:11277] +synonym: "CA1Rsr" RELATED OMO:0003000 [DHBA:11277] xref: DHBA:11277 intersection_of: UBERON:0014567 ! layer of hippocampal field intersection_of: part_of UBERON:0005372 ! hippocampus stratum radiatum @@ -180839,7 +180839,7 @@ intersection_of: part_of UBERON:0034777 ! rostral CA1 [Term] id: UBERON:0034830 name: stratum pyramidale of rostral CA1 -synonym: "CA1Rsp" RELATED ABBREVIATION [DHBA:11278] +synonym: "CA1Rsp" RELATED OMO:0003000 [DHBA:11278] xref: DHBA:11278 intersection_of: UBERON:0014567 ! layer of hippocampal field intersection_of: part_of UBERON:0002313 ! hippocampus pyramidal layer @@ -180848,7 +180848,7 @@ intersection_of: part_of UBERON:0034777 ! rostral CA1 [Term] id: UBERON:0034831 name: stratum oriens of rostral CA1 -synonym: "CA1Rso" RELATED ABBREVIATION [DHBA:11279] +synonym: "CA1Rso" RELATED OMO:0003000 [DHBA:11279] xref: DHBA:11279 intersection_of: UBERON:0014567 ! layer of hippocampal field intersection_of: part_of UBERON:0005371 ! hippocampus stratum oriens @@ -180857,7 +180857,7 @@ intersection_of: part_of UBERON:0034777 ! rostral CA1 [Term] id: UBERON:0034833 name: stratum lacunosum-moleculare of rostral CA2 -synonym: "CA2Rslm" RELATED ABBREVIATION [DHBA:11286] +synonym: "CA2Rslm" RELATED OMO:0003000 [DHBA:11286] xref: DHBA:11286 intersection_of: UBERON:0014567 ! layer of hippocampal field intersection_of: part_of UBERON:0007640 ! hippocampus stratum lacunosum moleculare @@ -180866,7 +180866,7 @@ intersection_of: part_of UBERON:0034778 ! rostral CA2 [Term] id: UBERON:0034834 name: stratum radiatum of rostral CA2 -synonym: "CA2Rsr" RELATED ABBREVIATION [DHBA:11287] +synonym: "CA2Rsr" RELATED OMO:0003000 [DHBA:11287] xref: DHBA:11287 intersection_of: UBERON:0014567 ! layer of hippocampal field intersection_of: part_of UBERON:0005372 ! hippocampus stratum radiatum @@ -180875,7 +180875,7 @@ intersection_of: part_of UBERON:0034778 ! rostral CA2 [Term] id: UBERON:0034835 name: stratum pyramidale of rostral CA2 -synonym: "CA2Rsp" RELATED ABBREVIATION [DHBA:11288] +synonym: "CA2Rsp" RELATED OMO:0003000 [DHBA:11288] xref: DHBA:11288 intersection_of: UBERON:0014567 ! layer of hippocampal field intersection_of: part_of UBERON:0002313 ! hippocampus pyramidal layer @@ -180884,7 +180884,7 @@ intersection_of: part_of UBERON:0034778 ! rostral CA2 [Term] id: UBERON:0034836 name: stratum oriens of rostral CA2 -synonym: "CA2Rso" RELATED ABBREVIATION [DHBA:11289] +synonym: "CA2Rso" RELATED OMO:0003000 [DHBA:11289] xref: DHBA:11289 intersection_of: UBERON:0014567 ! layer of hippocampal field intersection_of: part_of UBERON:0005371 ! hippocampus stratum oriens @@ -180893,7 +180893,7 @@ intersection_of: part_of UBERON:0034778 ! rostral CA2 [Term] id: UBERON:0034838 name: stratum lacunosum-moleculare of rostral CA3 -synonym: "CA3Rslm" RELATED ABBREVIATION [DHBA:11296] +synonym: "CA3Rslm" RELATED OMO:0003000 [DHBA:11296] xref: DHBA:11296 intersection_of: UBERON:0014567 ! layer of hippocampal field intersection_of: part_of UBERON:0007640 ! hippocampus stratum lacunosum moleculare @@ -180902,7 +180902,7 @@ intersection_of: part_of UBERON:0034779 ! rostral CA3 [Term] id: UBERON:0034839 name: stratum radiatum of rostral CA3 -synonym: "CA3Rsr" RELATED ABBREVIATION [DHBA:11297] +synonym: "CA3Rsr" RELATED OMO:0003000 [DHBA:11297] xref: DHBA:11297 intersection_of: UBERON:0014567 ! layer of hippocampal field intersection_of: part_of UBERON:0005372 ! hippocampus stratum radiatum @@ -180911,7 +180911,7 @@ intersection_of: part_of UBERON:0034779 ! rostral CA3 [Term] id: UBERON:0034840 name: stratum lucidum of rostral CA3 -synonym: "CA3Rsl" RELATED ABBREVIATION [DHBA:11298] +synonym: "CA3Rsl" RELATED OMO:0003000 [DHBA:11298] xref: DHBA:11298 intersection_of: UBERON:0014567 ! layer of hippocampal field intersection_of: part_of UBERON:0007637 ! hippocampus stratum lucidum @@ -180920,7 +180920,7 @@ intersection_of: part_of UBERON:0034779 ! rostral CA3 [Term] id: UBERON:0034841 name: stratum pyramidale of rostral CA3 -synonym: "CA3Rsp" RELATED ABBREVIATION [DHBA:11299] +synonym: "CA3Rsp" RELATED OMO:0003000 [DHBA:11299] xref: DHBA:11299 intersection_of: UBERON:0014567 ! layer of hippocampal field intersection_of: part_of UBERON:0002313 ! hippocampus pyramidal layer @@ -180929,7 +180929,7 @@ intersection_of: part_of UBERON:0034779 ! rostral CA3 [Term] id: UBERON:0034842 name: stratum oriens of rostral CA3 -synonym: "CA3Rso" RELATED ABBREVIATION [DHBA:11300] +synonym: "CA3Rso" RELATED OMO:0003000 [DHBA:11300] xref: DHBA:11300 intersection_of: UBERON:0014567 ! layer of hippocampal field intersection_of: part_of UBERON:0005371 ! hippocampus stratum oriens @@ -180938,7 +180938,7 @@ intersection_of: part_of UBERON:0034779 ! rostral CA3 [Term] id: UBERON:0034858 name: stratum lacunosum-moleculare of uncal CA1 -synonym: "CA1Uslm" RELATED ABBREVIATION [DHBA:266441271] +synonym: "CA1Uslm" RELATED OMO:0003000 [DHBA:266441271] xref: DHBA:266441271 intersection_of: UBERON:0014567 ! layer of hippocampal field intersection_of: part_of UBERON:0007640 ! hippocampus stratum lacunosum moleculare @@ -180947,7 +180947,7 @@ intersection_of: part_of UBERON:0034774 ! uncal CA1 [Term] id: UBERON:0034859 name: stratum radiatum of uncal CA1 -synonym: "CA1Usr" RELATED ABBREVIATION [DHBA:266441283] +synonym: "CA1Usr" RELATED OMO:0003000 [DHBA:266441283] xref: DHBA:266441283 intersection_of: UBERON:0014567 ! layer of hippocampal field intersection_of: part_of UBERON:0005372 ! hippocampus stratum radiatum @@ -180956,7 +180956,7 @@ intersection_of: part_of UBERON:0034774 ! uncal CA1 [Term] id: UBERON:0034860 name: stratum pyramidale of uncal CA1 -synonym: "CA1Usp" RELATED ABBREVIATION [DHBA:266441287] +synonym: "CA1Usp" RELATED OMO:0003000 [DHBA:266441287] xref: DHBA:266441287 intersection_of: UBERON:0014567 ! layer of hippocampal field intersection_of: part_of UBERON:0002313 ! hippocampus pyramidal layer @@ -180965,7 +180965,7 @@ intersection_of: part_of UBERON:0034774 ! uncal CA1 [Term] id: UBERON:0034861 name: stratum oriens of uncal CA1 -synonym: "CA1Uso" RELATED ABBREVIATION [DHBA:266441291] +synonym: "CA1Uso" RELATED OMO:0003000 [DHBA:266441291] xref: DHBA:266441291 intersection_of: UBERON:0014567 ! layer of hippocampal field intersection_of: part_of UBERON:0005371 ! hippocampus stratum oriens @@ -180974,7 +180974,7 @@ intersection_of: part_of UBERON:0034774 ! uncal CA1 [Term] id: UBERON:0034863 name: stratum lacunosum-moleculare of uncal CA2 -synonym: "CA2Uslm" RELATED ABBREVIATION [DHBA:266441315] +synonym: "CA2Uslm" RELATED OMO:0003000 [DHBA:266441315] xref: DHBA:266441315 intersection_of: UBERON:0014567 ! layer of hippocampal field intersection_of: part_of UBERON:0007640 ! hippocampus stratum lacunosum moleculare @@ -180983,7 +180983,7 @@ intersection_of: part_of UBERON:0034775 ! uncal CA2 [Term] id: UBERON:0034864 name: stratum radiatum of uncal CA2 -synonym: "CA2Usr" RELATED ABBREVIATION [DHBA:266441327] +synonym: "CA2Usr" RELATED OMO:0003000 [DHBA:266441327] xref: DHBA:266441327 intersection_of: UBERON:0014567 ! layer of hippocampal field intersection_of: part_of UBERON:0005372 ! hippocampus stratum radiatum @@ -180992,7 +180992,7 @@ intersection_of: part_of UBERON:0034775 ! uncal CA2 [Term] id: UBERON:0034865 name: stratum pyramidale of uncal CA2 -synonym: "CA2Usp" RELATED ABBREVIATION [DHBA:266441331] +synonym: "CA2Usp" RELATED OMO:0003000 [DHBA:266441331] xref: DHBA:266441331 intersection_of: UBERON:0014567 ! layer of hippocampal field intersection_of: part_of UBERON:0002313 ! hippocampus pyramidal layer @@ -181001,7 +181001,7 @@ intersection_of: part_of UBERON:0034775 ! uncal CA2 [Term] id: UBERON:0034866 name: stratum oriens of uncal CA2 -synonym: "CA2Uso" RELATED ABBREVIATION [DHBA:266441335] +synonym: "CA2Uso" RELATED OMO:0003000 [DHBA:266441335] xref: DHBA:266441335 intersection_of: UBERON:0014567 ! layer of hippocampal field intersection_of: part_of UBERON:0005371 ! hippocampus stratum oriens @@ -181010,7 +181010,7 @@ intersection_of: part_of UBERON:0034775 ! uncal CA2 [Term] id: UBERON:0034868 name: stratum lacunosum-moleculare of uncal CA3 -synonym: "CA3Uslm" RELATED ABBREVIATION [DHBA:266441359] +synonym: "CA3Uslm" RELATED OMO:0003000 [DHBA:266441359] xref: DHBA:266441359 intersection_of: UBERON:0014567 ! layer of hippocampal field intersection_of: part_of UBERON:0007640 ! hippocampus stratum lacunosum moleculare @@ -181019,7 +181019,7 @@ intersection_of: part_of UBERON:0034776 ! uncal CA3 [Term] id: UBERON:0034869 name: stratum radiatum of uncal CA3 -synonym: "CA3Usr" RELATED ABBREVIATION [DHBA:266441371] +synonym: "CA3Usr" RELATED OMO:0003000 [DHBA:266441371] xref: DHBA:266441371 intersection_of: UBERON:0014567 ! layer of hippocampal field intersection_of: part_of UBERON:0005372 ! hippocampus stratum radiatum @@ -181028,7 +181028,7 @@ intersection_of: part_of UBERON:0034776 ! uncal CA3 [Term] id: UBERON:0034870 name: stratum lucidum of uncal CA3 -synonym: "CA3Usl" RELATED ABBREVIATION [DHBA:266441375] +synonym: "CA3Usl" RELATED OMO:0003000 [DHBA:266441375] xref: DHBA:266441375 intersection_of: UBERON:0014567 ! layer of hippocampal field intersection_of: part_of UBERON:0007637 ! hippocampus stratum lucidum @@ -181037,7 +181037,7 @@ intersection_of: part_of UBERON:0034776 ! uncal CA3 [Term] id: UBERON:0034871 name: stratum pyramidale of uncal CA3 -synonym: "CA3Usp" RELATED ABBREVIATION [DHBA:266441379] +synonym: "CA3Usp" RELATED OMO:0003000 [DHBA:266441379] xref: DHBA:266441379 intersection_of: UBERON:0014567 ! layer of hippocampal field intersection_of: part_of UBERON:0002313 ! hippocampus pyramidal layer @@ -181046,7 +181046,7 @@ intersection_of: part_of UBERON:0034776 ! uncal CA3 [Term] id: UBERON:0034872 name: stratum oriens of uncal CA3 -synonym: "CA3Uso" RELATED ABBREVIATION [DHBA:266441383] +synonym: "CA3Uso" RELATED OMO:0003000 [DHBA:266441383] xref: DHBA:266441383 intersection_of: UBERON:0014567 ! layer of hippocampal field intersection_of: part_of UBERON:0005371 ! hippocampus stratum oriens @@ -181148,7 +181148,7 @@ relationship: part_of UBERON:0005390 {source="NIFSTD"} ! cortical layer I id: UBERON:0034889 name: posterior parietal cortex def: "The posterior parietal cortex is a portion of the parietal lobe which manipulates mental images, and integrates sensory and motor portions of the brain. Some sources say that it consists of Brodmann area 5 and Brodmann area 7. Other sources say it is only area 7." [Wikipedia:Posterior_parietal_cortex] -synonym: "PoPC" RELATED ABBREVIATION [DHBA:10214] +synonym: "PoPC" RELATED OMO:0003000 [DHBA:10214] xref: DHBA:10214 xref: Wikipedia:Posterior_parietal_cortex is_a: UBERON:0002616 ! regional part of brain @@ -181159,8 +181159,8 @@ id: UBERON:0034891 name: insular cortex synonym: "cortex of insula" EXACT [FMA:242223] synonym: "gray matter of insula" RELATED [FMA:242223] -synonym: "ICx" RELATED ABBREVIATION [DHBA:10288] -synonym: "iNS" BROAD ABBREVIATION [FMA:242223, FMA:CMA] +synonym: "ICx" RELATED OMO:0003000 [DHBA:10288] +synonym: "iNS" BROAD OMO:0003000 [FMA:242223, FMA:CMA] synonym: "insular neocortex" EXACT [DHBA:10288] xref: BM:Tel-Cx-Ins xref: DHBA:10288 @@ -181213,7 +181213,7 @@ relationship: part_of UBERON:0034891 ! insular cortex [Term] id: UBERON:0034894 name: lateral nucleus of stria terminalis -synonym: "BSTL" RELATED ABBREVIATION [NLX:54921] +synonym: "BSTL" RELATED OMO:0003000 [NLX:54921] synonym: "lateral bed nucleus of stria terminalis" RELATED [NLX:54921] synonym: "lateral bed nucleus of the stria terminalis" RELATED [NLX:54921] synonym: "lateral subdivision of BNST" EXACT [DHBA:10386] @@ -181227,7 +181227,7 @@ relationship: part_of UBERON:0001880 {source="NIFSTD"} ! bed nucleus of stria te [Term] id: UBERON:0034895 name: medial nucleus of stria terminalis -synonym: "BSTM" RELATED ABBREVIATION [NLX:80623] +synonym: "BSTM" RELATED OMO:0003000 [NLX:80623] synonym: "medial bed nucleus of stria terminalis" RELATED [NLX:80623] synonym: "medial bed nucleus of the stria terminalis" RELATED [NLX:80623] synonym: "medial subdivision of BNST" EXACT [DHBA:10385] @@ -181241,7 +181241,7 @@ id: UBERON:0034896 name: ansa peduncularis synonym: "ansa peduncularis in thalamo" EXACT [FMA:TA] synonym: "ansa peduncularis in thalamus" EXACT [FMA:62071] -synonym: "AP" RELATED ABBREVIATION [DHBA:266441591] +synonym: "AP" RELATED OMO:0003000 [DHBA:266441591] synonym: "peduncular loop" EXACT [FMA:62071] xref: DHBA:266441591 xref: FMA:62071 @@ -181353,7 +181353,7 @@ id: UBERON:0034910 name: medial pretectal nucleus synonym: "medial pretectal area" RELATED [NeuroNames:1176] synonym: "medial pretectal nucleus" RELATED [NeuroNames:1176] -synonym: "MPT" RELATED ABBREVIATION [DHBA:12184, DMBA:16585] +synonym: "MPT" RELATED OMO:0003000 [DHBA:12184, DMBA:16585] xref: DHBA:12184 xref: DMBA:16585 xref: neuronames:1176 @@ -181512,7 +181512,7 @@ property_value: function_notes "the auricular feathers play a role in hearing by id: UBERON:0034931 name: perforant path def: "A pathway of fibers originating in the lateral part of the entorhinal area, perforating the subiculum of the hippocampus, and running into the stratum moleculare of the hippocampus, where these fibers synapse with others that go to the dentate gyrus. (Dorland, 28th ed)." [MESH:A08.612.600] -synonym: "perf" RELATED ABBREVIATION [DHBA:12080] +synonym: "perf" RELATED OMO:0003000 [DHBA:12080] synonym: "perforant path" RELATED [MESH:A08.612.600] synonym: "perforant pathway" RELATED [MESH:A08.612.600] synonym: "perforating fasciculus" RELATED [MESH:A08.612.600] @@ -181650,7 +181650,7 @@ relationship: surrounds UBERON:0011937 ! vibrissa root sheath id: UBERON:0034942 name: vibrissal follicle-sinus complex def: "A sensory receptor of the mammalian integument system that consist of a blood sinus plus follicle, and sometimes concentric rings of epidermal tissue." [PMID:16342212] -synonym: "F-SC" RELATED ABBREVIATION [] +synonym: "F-SC" RELATED OMO:0003000 [] is_a: UBERON:0012451 ! sensory receptor relationship: has_part UBERON:0010419 ! vibrissa follicle relationship: has_part UBERON:0034941 ! blood sinus of vibrissa @@ -182064,7 +182064,7 @@ intersection_of: part_of UBERON:0000362 ! renal medulla id: UBERON:0034999 name: posterolateral cortical amygdaloid nucleus synonym: "cortical amygdalar nucleus, posterior part, lateral zone" RELATED [NeuroNames:3249] -synonym: "PLCo" RELATED ABBREVIATION [DMBA:15999] +synonym: "PLCo" RELATED OMO:0003000 [DMBA:15999] synonym: "posterolateral cortical amygdalar nucleus" RELATED [NeuroNames:3249] synonym: "posterolateral cortical amygdaloid area" EXACT [DMBA:15999] synonym: "posterolateral cortical amygdaloid area" RELATED [NeuroNames:3249] @@ -182080,7 +182080,7 @@ relationship: part_of UBERON:0002891 {source="EMAPA"} ! cortical amygdaloid nucl id: UBERON:0035001 name: posteromedial cortical amygdaloid nucleus synonym: "cortical amygdalar nucleus, posterior part, medial zone" RELATED [NeuroNames:3250] -synonym: "PMCo" RELATED ABBREVIATION [DMBA:15950] +synonym: "PMCo" RELATED OMO:0003000 [DMBA:15950] synonym: "posteromedial cortical amygdalar nucleus" RELATED [NeuroNames:3250] synonym: "posteromedial cortical amygdaloid nucleus" RELATED [NeuroNames:3250] synonym: "posteromedial part of the cortical nucleus" RELATED [NeuroNames:3250] @@ -182217,7 +182217,7 @@ name: inferior olive, beta nucleus synonym: "beta subnucleus of the inferior olive" RELATED [NeuroNames:1755] synonym: "inferior olive beta subnucleus" EXACT [MA:0001041] synonym: "inferior olive, beta subnucleus" RELATED [NeuroNames:1755] -synonym: "IOBe" RELATED ABBREVIATION [DHBA:12602] +synonym: "IOBe" RELATED OMO:0003000 [DHBA:12602] xref: DHBA:12602 xref: EMAPA:37611 {source="MA:th"} xref: MA:0001041 @@ -182271,7 +182271,7 @@ relationship: part_of UBERON:0002256 ! dorsal horn of spinal cord [Term] id: UBERON:0035026 name: amygdalohippocampal transition area -synonym: "AHTA" RELATED ABBREVIATION [DHBA:10380] +synonym: "AHTA" RELATED OMO:0003000 [DHBA:10380] xref: DHBA:10380 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0034673 ! amygdalohippocampal area @@ -182279,7 +182279,7 @@ relationship: part_of UBERON:0034673 ! amygdalohippocampal area [Term] id: UBERON:0035027 name: amygdalohippocampal area, magnocellular division -synonym: "AHiAm" RELATED ABBREVIATION [HBA:265504452] +synonym: "AHiAm" RELATED OMO:0003000 [HBA:265504452] xref: HBA:265504452 xref: PBA:10136 is_a: UBERON:0002616 ! regional part of brain @@ -182288,7 +182288,7 @@ relationship: part_of UBERON:0034673 ! amygdalohippocampal area [Term] id: UBERON:0035028 name: amygdalohippocampal area, parvocellular division -synonym: "AHiAp" RELATED ABBREVIATION [HBA:265504456] +synonym: "AHiAp" RELATED OMO:0003000 [HBA:265504456] xref: HBA:265504456 xref: PBA:10137 is_a: UBERON:0002616 ! regional part of brain @@ -182501,7 +182501,7 @@ id: UBERON:0035077 name: lateral nasal gland def: "Any of the lateral nasal glands (the largest nasal secretory glands in rodents) which surround the maxillary sinus located in the lateral wall adjacent to each nasal passage and are characterized by cytologic features similar to those described for the major serous salivary glands; secretory contents of the LNG drain into the nasal vestibule; the LNG is a major site for the synthesis and secretion of odorant-binding proteins that serve as odorant carriers in nasal mucus; it also, synthesizes large amounts of immunoglobulin A, which is important for immune defense of the upper respiratory tract, and testosterone and salivary androgen-binding proteins, which are likely important in olfaction and reproductive behavior." [MP:0013582] synonym: "glandula nasalis lateralis" EXACT LATIN [MP:0013582] -synonym: "LNG" RELATED ABBREVIATION [MP:0013582] +synonym: "LNG" RELATED OMO:0003000 [MP:0013582] synonym: "Steno gland" EXACT [MP:0013582] synonym: "Steno's gland" EXACT [MP:0013582] xref: EMAPA:37894 {source="MA:th"} @@ -182846,7 +182846,7 @@ property_value: editor_note "ideally we would like to classify under this class [Term] id: UBERON:0035113 name: central part of mediodorsal nucleus of the thalamus -synonym: "MDc" RELATED ABBREVIATION [MBA:617] +synonym: "MDc" RELATED OMO:0003000 [MBA:617] synonym: "mediodorsal nucleus of the thalamus, central part" EXACT [MBA:617] xref: MBA:617 is_a: UBERON:0002020 ! gray matter @@ -182855,7 +182855,7 @@ relationship: part_of UBERON:0002739 {source="MBA"} ! medial dorsal nucleus of t [Term] id: UBERON:0035114 name: lateral part of mediodorsal nucleus of the thalamus -synonym: "MDl" RELATED ABBREVIATION [MBA:626] +synonym: "MDl" RELATED OMO:0003000 [MBA:626] synonym: "mediodorsal nucleus of the thalamus, lateral part" EXACT [MBA:626] xref: MBA:626 is_a: UBERON:0002020 ! gray matter @@ -183162,8 +183162,8 @@ is_a: UBERON:0001663 {source="ncithesaurus"} ! cerebral vein id: UBERON:0035153 name: dorsolateral prefrontal cortex layer 1 def: "Most superficial layer of the Dorsolateral Prefrontal Cortex (DLPFC)." [NLX:156731] -synonym: "dlPF1" RELATED ABBREVIATION [] -synonym: "dlPFC1" RELATED ABBREVIATION [] +synonym: "dlPF1" RELATED OMO:0003000 [] +synonym: "dlPFC1" RELATED OMO:0003000 [] synonym: "layer I of dorsolateral prefrontal cortex" EXACT [] xref: NLX:156731 intersection_of: UBERON:0005390 ! cortical layer I @@ -183173,8 +183173,8 @@ intersection_of: part_of UBERON:0009834 ! dorsolateral prefrontal cortex id: UBERON:0035154 name: dorsolateral prefrontal cortex layer 2 def: "Layer 2 of neocortex lying just deep to superficial layer 1 of dorsolateral prefrontal cortex." [NLX:156732] -synonym: "dlPF2" RELATED ABBREVIATION [] -synonym: "dlPFC2" RELATED ABBREVIATION [] +synonym: "dlPF2" RELATED OMO:0003000 [] +synonym: "dlPFC2" RELATED OMO:0003000 [] synonym: "layer II of dorsolateral prefrontal cortex" EXACT [PBA:12986] xref: NLX:156732 xref: PBA:12986 @@ -183185,8 +183185,8 @@ intersection_of: part_of UBERON:0009834 ! dorsolateral prefrontal cortex id: UBERON:0035155 name: dorsolateral prefrontal cortex layer 3 def: "Layer 3 of dorsolateral prefrontal cortex lying deep to the layer 2 and cytoarchitectonically defined by numerous small pyramidal neurons." [NLX:156733] -synonym: "dlPF3" RELATED ABBREVIATION [] -synonym: "dlPFC3" RELATED ABBREVIATION [] +synonym: "dlPF3" RELATED OMO:0003000 [] +synonym: "dlPFC3" RELATED OMO:0003000 [] synonym: "layer III of dorsolateral prefrontal cortex" EXACT [PBA:12987] xref: NLX:156733 xref: PBA:12987 @@ -183197,8 +183197,8 @@ intersection_of: part_of UBERON:0009834 ! dorsolateral prefrontal cortex id: UBERON:0035156 name: dorsolateral prefrontal cortex layer 4 def: "Layer 4 of dorsolateral prefrontal cortex lying deep to the external pyramidal layer and cytoarchitectonically defined by presence of small cells." [NLX:156734] -synonym: "dlPF4" RELATED ABBREVIATION [] -synonym: "dlPFC4" RELATED ABBREVIATION [] +synonym: "dlPF4" RELATED OMO:0003000 [] +synonym: "dlPFC4" RELATED OMO:0003000 [] synonym: "granular layer IV of dorsolateral prefrontal cortex" EXACT [PBA:12988] xref: NLX:156734 xref: PBA:12988 @@ -183209,8 +183209,8 @@ intersection_of: part_of UBERON:0009834 ! dorsolateral prefrontal cortex id: UBERON:0035157 name: dorsolateral prefrontal cortex layer 5 def: "Layer 5 of dorsolateral prefrontal cortex lying deep to the internal granule cell layer 4 and cytoarchitectonically divisible into layers 5a and 5b. Layer 5a is characterized by the predominance of large pyramidal cell bodies. Layer 5b is pale in comparison." [NLX:156735] -synonym: "dlPF5" RELATED ABBREVIATION [] -synonym: "dlPFC5" RELATED ABBREVIATION [] +synonym: "dlPF5" RELATED OMO:0003000 [] +synonym: "dlPFC5" RELATED OMO:0003000 [] synonym: "layer V of dorsolateral prefrontal cortex" EXACT [PBA:12989] xref: NLX:156735 xref: PBA:12989 @@ -183221,8 +183221,8 @@ intersection_of: part_of UBERON:0009834 ! dorsolateral prefrontal cortex id: UBERON:0035158 name: dorsolateral prefrontal cortex layer 6 def: "Innermost layer of dorsolateral prefrontal cortex lying deep to the internal pyramidal cell layer 5. It is cytoarchitectonically defined in the DLPFC by cells of varying sizes. DLPFC layer 6a is characterized by more neurons and layer 6b has comparatively more glia." [NLX:156736] -synonym: "dlPF6" RELATED ABBREVIATION [] -synonym: "dlPFC6" RELATED ABBREVIATION [] +synonym: "dlPF6" RELATED OMO:0003000 [] +synonym: "dlPFC6" RELATED OMO:0003000 [] synonym: "layer VI of dorsolateral prefrontal cortex" EXACT [PBA:12990] xref: NLX:156736 xref: PBA:12990 @@ -184772,7 +184772,7 @@ property_value: taxon_notes "in some mammals this is found in a cartilaginous st [Term] id: UBERON:0035562 name: intermediate pretectal nucleus -synonym: "IPT" RELATED ABBREVIATION [DMBA:16598] +synonym: "IPT" RELATED OMO:0003000 [DMBA:16598] xref: DMBA:16598 is_a: UBERON:0014450 ! pretectal nucleus @@ -184781,7 +184781,7 @@ id: UBERON:0035563 name: magnocellular superficial pretectal nucleus def: "A nucleus that is part of the superficial pretectum and is characterized by large widely scattered cells." [ISBN:0471888893] synonym: "magnocellular superficial pretectal nuclei" EXACT PLURAL [ZFA:0000235] -synonym: "PSm" RELATED ABBREVIATION [ISBN:0471888893] +synonym: "PSm" RELATED OMO:0003000 [ISBN:0471888893] xref: TAO:0000235 xref: ZFA:0000235 is_a: UBERON:0006569 {source="ZFA"} ! diencephalic nucleus @@ -184796,7 +184796,7 @@ id: UBERON:0035564 name: parvocellular superficial pretectal nucleus def: "A nucleus that is part of the superficial pretectum and is characterized by small cells." [ISBN:0471888893, ZFA:0000406] synonym: "parvocellular superficial pretectal nuclei" EXACT PLURAL [ZFA:0000406] -synonym: "PSp" RELATED ABBREVIATION [ISBN:0471888893] +synonym: "PSp" RELATED OMO:0003000 [ISBN:0471888893] synonym: "superficial pretectal nucleus" BROAD SENSU [ISBN:0471888893, NCBITaxon:27686, NCBITaxon:7900] xref: TAO:0000406 xref: ZFA:0000406 @@ -184879,7 +184879,7 @@ synonym: "tectothalamic fibers" EXACT [NeuroNames:1424] synonym: "tectothalamic fibers" RELATED [NeuroNames:1424] synonym: "tectothalamic pathway" RELATED [NeuroNames:1424] synonym: "tectothalamic tract" RELATED [NeuroNames:1424] -synonym: "ttp" RELATED ABBREVIATION [MBA:357] +synonym: "ttp" RELATED OMO:0003000 [MBA:357] xref: MBA:357 xref: neuronames:1424 intersection_of: UBERON:0007702 ! tract of brain @@ -184899,13 +184899,13 @@ relationship: present_in_taxon NCBITaxon:8293 ! Caudata id: UBERON:0035573 name: dorsal pretectal periventricular nucleus synonym: "optic nucleus of posterior commissure" RELATED [ISBN:0471888893] -synonym: "PPd" RELATED ABBREVIATION [ISBN:0471888893] +synonym: "PPd" RELATED OMO:0003000 [ISBN:0471888893] is_a: UBERON:0035569 ! periventricular pretectal nucleus [Term] id: UBERON:0035574 name: ventral pretectal periventricular nucleus -synonym: "PPv" RELATED ABBREVIATION [ISBN:0471888893] +synonym: "PPv" RELATED OMO:0003000 [ISBN:0471888893] is_a: UBERON:0035569 ! periventricular pretectal nucleus [Term] @@ -185041,7 +185041,7 @@ relationship: part_of UBERON:0002104 ! visual system id: UBERON:0035595 name: accessory optic tract synonym: "accessory optic fibers" RELATED [] -synonym: "aot" RELATED ABBREVIATION [MBA:876] +synonym: "aot" RELATED OMO:0003000 [MBA:876] xref: MBA:876 xref: neuronames:1189 intersection_of: UBERON:0001018 ! axon tract @@ -185054,7 +185054,7 @@ name: circular nucleus of antherior hypothalamic nucleus def: "A group of cells located in the central part of the anterior hypothalamic nucleus in the anterior hypothalamic region of the rat ( Swanson-2004 ) and the mouse ( Paxinos-2001 ). Functionally it belongs to the magnocellular neuroendocrine cell groups of the subcortical motor system ( Swanson-2004 )." [NeuroNames:1853] comment: group of magnocellular elements arranged in a ring around a capillary bed. The cells are predominantly monopolar, tightly packed, and are flattened at the outer border of the ring. The entire nucleus is surrounded or encapsulated by myelinated fibers, hypothesized to be an osmoreceptor[PMID:974791] synonym: "circular nucleus" RELATED [NeuroNames:1853] -synonym: "NC" RELATED ABBREVIATION [MBA:432] +synonym: "NC" RELATED OMO:0003000 [MBA:432] synonym: "nucleus circularis" BROAD LATIN [MBA:432] xref: MBA:432 xref: neuronames:1853 @@ -185723,7 +185723,7 @@ id: UBERON:0035785 name: telencephalic song nucleus HVC def: "A nucleus in the brain of songbirds located in the caudal nidopallium, projecting to the song motor pathway via the robust nucleus of the arcopallium and to the Anterior Forebrain Pathway via the basal ganglia nucleus Area X." [GOC:mr, https://github.com/geneontology/go-ontology/issues/12057, Wikipedia:HVC_(avian_brain_region)] synonym: "higher vocal centre" RELATED DEPRECATED [BTO:0003390, PMID:15313771] -synonym: "HVC" BROAD ABBREVIATION [Wikipedia:HVC_(avian_brain_region)] +synonym: "HVC" BROAD OMO:0003000 [Wikipedia:HVC_(avian_brain_region)] synonym: "HVc" RELATED DEPRECATED [PMID:15313771] synonym: "HVC (avian brain region)" EXACT [Wikipedia:HVC_(avian_brain_region)] synonym: "hyperstriatum ventrale" RELATED DEPRECATED [BTO:0003390] @@ -185772,7 +185772,7 @@ intersection_of: part_of UBERON:0007639 ! hippocampus alveus id: UBERON:0035803 name: extrapyramidal tract system def: "A neural network located in the brain that is part of the motor system involved in the coordination of movement that is distinct from the pyramidal tract." [Wikipedia:Extrapyramidal_system] -synonym: "eps" RELATED ABBREVIATION [MBA:1000] +synonym: "eps" RELATED OMO:0003000 [MBA:1000] synonym: "extra-pyramidal tract" RELATED [Wikipedia:Extrapyramidal_system] synonym: "extrapyramidal fibre" RELATED [Wikipedia:Extrapyramidal_system] synonym: "extrapyramidal motor system" RELATED [Wikipedia:Extrapyramidal_system] @@ -186186,7 +186186,7 @@ property_value: depicted_by "http://media.eol.org/content/2010/03/24/02/63782_58 id: UBERON:0035872 name: primary somatosensory area barrel field layer 5 synonym: "barrel cortex layer 5" RELATED [NLX:157671] -synonym: "SSp-bfd5" RELATED ABBREVIATION [MBA:1070] +synonym: "SSp-bfd5" RELATED OMO:0003000 [MBA:1070] xref: MBA:1070 xref: NLX:157671 is_a: UBERON:0022303 {source="cjm"} ! nervous system cell part layer @@ -186195,7 +186195,7 @@ relationship: part_of UBERON:0010415 {source="MBA", source="NIFSTD"} ! barrel co [Term] id: UBERON:0035873 name: primary somatosensory area barrel field layer 1 -synonym: "SSp-bfd1" RELATED ABBREVIATION [MBA:981] +synonym: "SSp-bfd1" RELATED OMO:0003000 [MBA:981] xref: MBA:981 xref: NLX:157672 is_a: UBERON:0022303 {source="cjm"} ! nervous system cell part layer @@ -186205,7 +186205,7 @@ relationship: part_of UBERON:0010415 {source="MBA", source="NIFSTD"} ! barrel co id: UBERON:0035874 name: primary somatosensory area barrel field layer 2/3 synonym: "barrel cortex layer 2/3" RELATED [NLX:157673] -synonym: "SSp-bfd2/3" RELATED ABBREVIATION [MBA:201] +synonym: "SSp-bfd2/3" RELATED OMO:0003000 [MBA:201] xref: MBA:201 xref: NLX:157673 is_a: UBERON:0022303 {source="cjm"} ! nervous system cell part layer @@ -186215,7 +186215,7 @@ relationship: part_of UBERON:0010415 {source="MBA", source="NIFSTD"} ! barrel co id: UBERON:0035875 name: primary somatosensory area barrel field layer 6b synonym: "barrel cortex layer 6B" RELATED [NLX:157674] -synonym: "SSp-bfd6b" RELATED ABBREVIATION [MBA:1062] +synonym: "SSp-bfd6b" RELATED OMO:0003000 [MBA:1062] xref: MBA:1062 xref: NLX:157674 is_a: UBERON:0022303 {source="cjm"} ! nervous system cell part layer @@ -186225,7 +186225,7 @@ relationship: part_of UBERON:0010415 {source="MBA", source="NIFSTD"} ! barrel co id: UBERON:0035876 name: primary somatosensory area barrel field layer 6a synonym: "barrel cortex layer 6A" RELATED [NLX:157675] -synonym: "SSp-bfd6a" RELATED ABBREVIATION [MBA:1038] +synonym: "SSp-bfd6a" RELATED OMO:0003000 [MBA:1038] xref: MBA:1038 xref: NLX:157675 is_a: UBERON:0022303 {source="cjm"} ! nervous system cell part layer @@ -186235,7 +186235,7 @@ relationship: part_of UBERON:0010415 {source="MBA", source="NIFSTD"} ! barrel co id: UBERON:0035877 name: primary somatosensory area barrel field layer 4 synonym: "barrel cortex layer 4" RELATED [NLX:157676] -synonym: "SSp-bfd4" RELATED ABBREVIATION [MBA:1047] +synonym: "SSp-bfd4" RELATED OMO:0003000 [MBA:1047] xref: MBA:1047 xref: NLX:157676 is_a: UBERON:0022303 {source="cjm"} ! nervous system cell part layer @@ -186321,7 +186321,7 @@ property_value: taxon_notes "transient in humans" xsd:string [Term] id: UBERON:0035885 name: dorsal auditory area -synonym: "AUDd" RELATED ABBREVIATION [MBA:1011] +synonym: "AUDd" RELATED OMO:0003000 [MBA:1011] xref: MBA:1011 is_a: UBERON:0002616 {source="MBA"} ! regional part of brain relationship: part_of UBERON:0001393 {source="MBA"} ! auditory cortex @@ -186329,7 +186329,7 @@ relationship: part_of UBERON:0001393 {source="MBA"} ! auditory cortex [Term] id: UBERON:0035886 name: posterior parietal association areas -synonym: "PTLp" RELATED ABBREVIATION [MBA:22] +synonym: "PTLp" RELATED OMO:0003000 [MBA:22] xref: MBA:22 is_a: UBERON:0002616 {source="MBA"} ! regional part of brain relationship: part_of UBERON:0001950 {source="MBA"} ! neocortex @@ -186337,7 +186337,7 @@ relationship: part_of UBERON:0001950 {source="MBA"} ! neocortex [Term] id: UBERON:0035890 name: postrhinal area -synonym: "VISpor" RELATED ABBREVIATION [MBA:312782628] +synonym: "VISpor" RELATED OMO:0003000 [MBA:312782628] xref: MBA:312782628 is_a: UBERON:0002616 {source="MBA"} ! regional part of brain relationship: part_of UBERON:0000411 {source="MBA"} ! visual cortex @@ -186345,7 +186345,7 @@ relationship: part_of UBERON:0000411 {source="MBA"} ! visual cortex [Term] id: UBERON:0035892 name: primary visual area, layer 6a -synonym: "VISp6a" RELATED ABBREVIATION [MBA:33] +synonym: "VISp6a" RELATED OMO:0003000 [MBA:33] xref: MBA:33 is_a: UBERON:0002616 {source="MBA"} ! regional part of brain relationship: part_of UBERON:0002436 {source="MBA"} ! primary visual cortex @@ -186353,7 +186353,7 @@ relationship: part_of UBERON:0002436 {source="MBA"} ! primary visual cortex [Term] id: UBERON:0035893 name: anteromedial visual area -synonym: "VISam" RELATED ABBREVIATION [MBA:394] +synonym: "VISam" RELATED OMO:0003000 [MBA:394] xref: MBA:394 is_a: UBERON:0002616 {source="MBA"} ! regional part of brain relationship: part_of UBERON:0000411 {source="MBA"} ! visual cortex @@ -186361,7 +186361,7 @@ relationship: part_of UBERON:0000411 {source="MBA"} ! visual cortex [Term] id: UBERON:0035894 name: anterolateral visual area -synonym: "VISal" RELATED ABBREVIATION [MBA:402] +synonym: "VISal" RELATED OMO:0003000 [MBA:402] xref: MBA:402 is_a: UBERON:0002616 {source="MBA"} ! regional part of brain relationship: part_of UBERON:0000411 {source="MBA"} ! visual cortex @@ -186369,7 +186369,7 @@ relationship: part_of UBERON:0000411 {source="MBA"} ! visual cortex [Term] id: UBERON:0035895 name: lateral visual area -synonym: "VISl" RELATED ABBREVIATION [MBA:409] +synonym: "VISl" RELATED OMO:0003000 [MBA:409] xref: MBA:409 is_a: UBERON:0002616 {source="MBA"} ! regional part of brain relationship: part_of UBERON:0000411 {source="MBA"} ! visual cortex @@ -186377,7 +186377,7 @@ relationship: part_of UBERON:0000411 {source="MBA"} ! visual cortex [Term] id: UBERON:0035897 name: posterolateral visual area -synonym: "VISpl" RELATED ABBREVIATION [MBA:425] +synonym: "VISpl" RELATED OMO:0003000 [MBA:425] xref: MBA:425 is_a: UBERON:0002616 {source="MBA"} ! regional part of brain relationship: part_of UBERON:0000411 {source="MBA"} ! visual cortex @@ -186385,7 +186385,7 @@ relationship: part_of UBERON:0000411 {source="MBA"} ! visual cortex [Term] id: UBERON:0035900 name: posteromedial visual area -synonym: "VISpm" RELATED ABBREVIATION [MBA:533] +synonym: "VISpm" RELATED OMO:0003000 [MBA:533] xref: MBA:533 is_a: UBERON:0002616 {source="MBA"} ! regional part of brain relationship: part_of UBERON:0000411 {source="MBA"} ! visual cortex @@ -186393,7 +186393,7 @@ relationship: part_of UBERON:0000411 {source="MBA"} ! visual cortex [Term] id: UBERON:0035904 name: primary visual area, layer 4 -synonym: "VISp4" RELATED ABBREVIATION [MBA:721] +synonym: "VISp4" RELATED OMO:0003000 [MBA:721] xref: MBA:721 is_a: UBERON:0002616 {source="MBA"} ! regional part of brain relationship: part_of UBERON:0002436 {source="MBA"} ! primary visual cortex @@ -186401,7 +186401,7 @@ relationship: part_of UBERON:0002436 {source="MBA"} ! primary visual cortex [Term] id: UBERON:0035906 name: primary visual area, layer 5 -synonym: "VISp5" RELATED ABBREVIATION [MBA:778] +synonym: "VISp5" RELATED OMO:0003000 [MBA:778] xref: MBA:778 is_a: UBERON:0002616 {source="MBA"} ! regional part of brain relationship: part_of UBERON:0002436 {source="MBA"} ! primary visual cortex @@ -186409,7 +186409,7 @@ relationship: part_of UBERON:0002436 {source="MBA"} ! primary visual cortex [Term] id: UBERON:0035907 name: primary visual area, layer 2/3 -synonym: "VISp2/3" RELATED ABBREVIATION [MBA:821] +synonym: "VISp2/3" RELATED OMO:0003000 [MBA:821] xref: MBA:821 is_a: UBERON:0002616 {source="MBA"} ! regional part of brain relationship: part_of UBERON:0002436 {source="MBA"} ! primary visual cortex @@ -186417,7 +186417,7 @@ relationship: part_of UBERON:0002436 {source="MBA"} ! primary visual cortex [Term] id: UBERON:0035908 name: anterolateral visual area, layer 5 -synonym: "VISal5" RELATED ABBREVIATION [MBA:233] +synonym: "VISal5" RELATED OMO:0003000 [MBA:233] xref: MBA:233 is_a: UBERON:0002616 {source="MBA"} ! regional part of brain relationship: part_of UBERON:0035894 {source="MBA"} ! anterolateral visual area @@ -186425,7 +186425,7 @@ relationship: part_of UBERON:0035894 {source="MBA"} ! anterolateral visual area [Term] id: UBERON:0035909 name: posteromedial visual area, layer 6a -synonym: "VISpm6a" RELATED ABBREVIATION [MBA:257] +synonym: "VISpm6a" RELATED OMO:0003000 [MBA:257] xref: MBA:257 is_a: UBERON:0002616 {source="MBA"} ! regional part of brain relationship: part_of UBERON:0035900 {source="MBA"} ! posteromedial visual area @@ -186433,7 +186433,7 @@ relationship: part_of UBERON:0035900 {source="MBA"} ! posteromedial visual area [Term] id: UBERON:0035911 name: postrhinal area, layer 4 -synonym: "VISpor4" RELATED ABBREVIATION [MBA:312782640] +synonym: "VISpor4" RELATED OMO:0003000 [MBA:312782640] xref: MBA:312782640 is_a: UBERON:0002616 {source="MBA"} ! regional part of brain relationship: part_of UBERON:0035890 {source="MBA"} ! postrhinal area @@ -186441,7 +186441,7 @@ relationship: part_of UBERON:0035890 {source="MBA"} ! postrhinal area [Term] id: UBERON:0035912 name: rostrolateral visual area -synonym: "VISrl" RELATED ABBREVIATION [MBA:417] +synonym: "VISrl" RELATED OMO:0003000 [MBA:417] xref: MBA:417 is_a: UBERON:0002616 {source="MBA"} ! regional part of brain relationship: part_of UBERON:0035886 {source="MBA"} ! posterior parietal association areas @@ -186449,7 +186449,7 @@ relationship: part_of UBERON:0035886 {source="MBA"} ! posterior parietal associa [Term] id: UBERON:0035913 name: anteromedial visual area, layer 5 -synonym: "VISam5" RELATED ABBREVIATION [MBA:433] +synonym: "VISam5" RELATED OMO:0003000 [MBA:433] xref: MBA:433 is_a: UBERON:0002616 {source="MBA"} ! regional part of brain relationship: part_of UBERON:0035893 {source="MBA"} ! anteromedial visual area @@ -186457,7 +186457,7 @@ relationship: part_of UBERON:0035893 {source="MBA"} ! anteromedial visual area [Term] id: UBERON:0035914 name: posteromedial visual area, layer 4 -synonym: "VISpm4" RELATED ABBREVIATION [MBA:501] +synonym: "VISpm4" RELATED OMO:0003000 [MBA:501] xref: MBA:501 is_a: UBERON:0002616 {source="MBA"} ! regional part of brain relationship: part_of UBERON:0035900 {source="MBA"} ! posteromedial visual area @@ -186465,7 +186465,7 @@ relationship: part_of UBERON:0035900 {source="MBA"} ! posteromedial visual area [Term] id: UBERON:0035915 name: lateral visual area, layer 4 -synonym: "VISl4" RELATED ABBREVIATION [MBA:573] +synonym: "VISl4" RELATED OMO:0003000 [MBA:573] xref: MBA:573 is_a: UBERON:0002616 {source="MBA"} ! regional part of brain relationship: part_of UBERON:0035895 {source="MBA"} ! lateral visual area @@ -186473,7 +186473,7 @@ relationship: part_of UBERON:0035895 {source="MBA"} ! lateral visual area [Term] id: UBERON:0035916 name: lateral visual area, layer 5 -synonym: "VISl5" RELATED ABBREVIATION [MBA:613] +synonym: "VISl5" RELATED OMO:0003000 [MBA:613] xref: MBA:613 is_a: UBERON:0002616 {source="MBA"} ! regional part of brain relationship: part_of UBERON:0035895 {source="MBA"} ! lateral visual area @@ -186481,7 +186481,7 @@ relationship: part_of UBERON:0035895 {source="MBA"} ! lateral visual area [Term] id: UBERON:0035917 name: dorsal auditory area, layer 4 -synonym: "AUDd4" RELATED ABBREVIATION [MBA:678] +synonym: "AUDd4" RELATED OMO:0003000 [MBA:678] xref: MBA:678 is_a: UBERON:0002616 {source="MBA"} ! regional part of brain relationship: part_of UBERON:0035885 {source="MBA"} ! dorsal auditory area @@ -186489,7 +186489,7 @@ relationship: part_of UBERON:0035885 {source="MBA"} ! dorsal auditory area [Term] id: UBERON:0035918 name: lateral visual area, layer 6a -synonym: "VISl6a" RELATED ABBREVIATION [MBA:74] +synonym: "VISl6a" RELATED OMO:0003000 [MBA:74] xref: MBA:74 is_a: UBERON:0002616 {source="MBA"} ! regional part of brain relationship: part_of UBERON:0035895 {source="MBA"} ! lateral visual area @@ -186497,7 +186497,7 @@ relationship: part_of UBERON:0035895 {source="MBA"} ! lateral visual area [Term] id: UBERON:0035919 name: posterolateral visual area, layer 4 -synonym: "VISpl4" RELATED ABBREVIATION [MBA:869] +synonym: "VISpl4" RELATED OMO:0003000 [MBA:869] xref: MBA:869 is_a: UBERON:0002616 {source="MBA"} ! regional part of brain relationship: part_of UBERON:0035897 {source="MBA"} ! posterolateral visual area @@ -186505,7 +186505,7 @@ relationship: part_of UBERON:0035897 {source="MBA"} ! posterolateral visual area [Term] id: UBERON:0035920 name: rostrolateral area, layer 5 -synonym: "VISrl5" RELATED ABBREVIATION [MBA:312782616] +synonym: "VISrl5" RELATED OMO:0003000 [MBA:312782616] xref: MBA:312782616 is_a: UBERON:0002616 {source="MBA"} ! regional part of brain relationship: part_of UBERON:0035912 {source="MBA"} ! rostrolateral visual area @@ -186515,7 +186515,7 @@ id: UBERON:0035922 name: intraculminate fissure of cerebellum def: "A fissure that divides the culmen lobule (lobules IV and V)." [MP:000999, PMID:1953602, UBERON:cjm] synonym: "fissura intraculminalis" EXACT LATIN [FMA:TA] -synonym: "ICF" RELATED ABBREVIATION [DHBA:266441729] +synonym: "ICF" RELATED OMO:0003000 [DHBA:266441729] synonym: "intraculminate fissure" EXACT [FMA:83737, HBA:9409] xref: DHBA:266441729 xref: FMA:83737 @@ -186534,7 +186534,7 @@ property_value: taxon_notes "The culmen lobule (lobules IV/V) is a single struct id: UBERON:0035924 name: radiation of corpus callosum def: "The spreading out of the fibers of the corpus callosum in the centrum semiovale of each cerebral hemisphere." [http://www.medilexicon.com/medicaldictionary.php?t=74819] -synonym: "CCRD" RELATED ABBREVIATION [DHBA:12026] +synonym: "CCRD" RELATED OMO:0003000 [DHBA:12026] synonym: "corpus callosum radiation" EXACT [FMA:77693] synonym: "radiatio corporis callosi" EXACT LATIN [FMA:TA] synonym: "radiatio corporis callosi" RELATED LATIN [NeuroNames:1336] @@ -186561,8 +186561,8 @@ synonym: "central insular sulcus" EXACT [FMA:83779] synonym: "central insular sulcus" RELATED [NeuroNames:112] synonym: "central sulcus of insula" EXACT [FMA:83779] synonym: "central sulcus of the insula" RELATED [NeuroNames:112] -synonym: "CIS" RELATED ABBREVIATION [HBA:9399] -synonym: "CSIN" RELATED ABBREVIATION [DHBA:13227] +synonym: "CIS" RELATED OMO:0003000 [HBA:9399] +synonym: "CSIN" RELATED OMO:0003000 [DHBA:13227] synonym: "fissura centralis insulae" EXACT LATIN [FMA:TA] synonym: "fissura centralis insulae" RELATED LATIN [NeuroNames:112] synonym: "sulcus centralis insulae" EXACT LATIN [FMA:TA] @@ -186579,7 +186579,7 @@ relationship: part_of UBERON:0002905 {source="HBA"} ! intralingual sulcus id: UBERON:0035926 name: preculminate fissure of cerebellum synonym: "fissura preculminalis" EXACT LATIN [FMA:TA] -synonym: "PCF" RELATED ABBREVIATION [HBA:9408] +synonym: "PCF" RELATED OMO:0003000 [HBA:9408] synonym: "postcentral fissure of the cerebellum" RELATED [NeuroNames:652] synonym: "preculminate fissure" EXACT [FMA:83736] xref: FMA:83736 @@ -186594,7 +186594,7 @@ id: UBERON:0035927 name: sulcus of parietal lobe synonym: "parietal lobe sulci" EXACT PLURAL [HBA:9370] synonym: "parietal lobe sulcus" EXACT [] -synonym: "PLs" RELATED ABBREVIATION [HBA:9370] +synonym: "PLs" RELATED OMO:0003000 [HBA:9370] xref: HBA:9370 xref: SCTID:314145001 intersection_of: UBERON:0013118 ! sulcus of brain @@ -186619,7 +186619,7 @@ id: UBERON:0035930 name: retro-olivary nucleus synonym: "nucleus retro-olivaris" EXACT LATIN [FMA:TA] synonym: "retro-olivary cell group" EXACT [FMA:72476] -synonym: "RO" RELATED ABBREVIATION [DHBA:12467] +synonym: "RO" RELATED OMO:0003000 [DHBA:12467] xref: DHBA:12467 xref: FMA:72476 xref: HBA:9181 @@ -186629,7 +186629,7 @@ is_a: UBERON:0007247 {source="FMA"} ! nucleus of superior olivary complex [Term] id: UBERON:0035931 name: sagittal stratum -synonym: "sst" RELATED ABBREVIATION [DHBA:12082] +synonym: "sst" RELATED OMO:0003000 [DHBA:12082] xref: DHBA:12082 xref: FMA:277107 xref: HBA:265505286 @@ -186642,7 +186642,7 @@ name: anterior segment of paracentral lobule synonym: "anterior part of paracentral lobule" EXACT [FMA:273508] synonym: "medial segment of precentral gyrus" EXACT [FMA:273508] synonym: "paracentral lobule, anterior part" EXACT [HBA:4071] -synonym: "PCLa" RELATED ABBREVIATION [HBA:4071] +synonym: "PCLa" RELATED OMO:0003000 [HBA:4071] xref: FMA:273508 xref: HBA:4071 is_a: UBERON:0002616 {source="HBA"} ! regional part of brain @@ -186668,7 +186668,7 @@ relationship: surrounded_by UBERON:0008967 {source="FMA"} ! centrum semiovale [Term] id: UBERON:0035934 name: posterior segment of paracentral lobule -synonym: "PCLp" RELATED ABBREVIATION [HBA:4125] +synonym: "PCLp" RELATED OMO:0003000 [HBA:4125] synonym: "posterior part of paracentral lobule" EXACT [FMA:273511] xref: FMA:273511 xref: HBA:4125 @@ -186682,7 +186682,7 @@ name: Meyer's loop of optic radiation def: "Part of the optic radiation which sweeps back on itself into the temporal lobe, just lateral to the temporal horn of the lateral ventricle." [http://radiopaedia.org/articles/meyer-loop] synonym: "inferior optic radiation" EXACT [NeuroNames:1466] synonym: "Meyer's loop" EXACT [] -synonym: "or-lp" RELATED ABBREVIATION [HBA:265505214] +synonym: "or-lp" RELATED OMO:0003000 [HBA:265505214] xref: FMA:280849 xref: HBA:265505214 xref: neuronames:1466 @@ -186694,11 +186694,11 @@ property_value: external_ontology_notes "in FMA this is disjoint from radiation id: UBERON:0035937 name: arcuate fasciculus def: "The arcuate fasciculus (Latin, curved bundle) is the neural pathway connecting the posterior part of the temporoparietal junction with the frontal cortex in the brain and is now considered as part of the Superior longitudinal fasciculus." [Wikipedia:Arcuate_fasciculus] -synonym: "AF" RELATED ABBREVIATION [DHBA:10569] +synonym: "AF" RELATED OMO:0003000 [DHBA:10569] synonym: "arcuate fascicle" EXACT [FMA:276650] synonym: "arcuate fascicle" RELATED [Wikipedia:Arcuate_fasciculus] synonym: "arcuate fasciculus" RELATED [NeuroNames:2063] -synonym: "ARF" RELATED ABBREVIATION [HBA:9231] +synonym: "ARF" RELATED OMO:0003000 [HBA:9231] synonym: "cerebral arcuate fasciculus" EXACT [FMA:276650] synonym: "fasciculus arcuatus" EXACT LATIN [FMA:TA] synonym: "fibrae arcuatae cerebri" RELATED LATIN [NeuroNames:2063] @@ -186714,7 +186714,7 @@ relationship: part_of UBERON:0022247 {source="DHBA"} ! forebrain ipsilateral fib [Term] id: UBERON:0035938 name: amiculum of inferior olive -synonym: "ami" RELATED ABBREVIATION [DHBA:12728] +synonym: "ami" RELATED OMO:0003000 [DHBA:12728] synonym: "amiculum of olive" EXACT [FMA:72611] synonym: "amiculum of the olive" EXACT [DHBA:12728] synonym: "amiculum olivae" EXACT [FMA:72611] @@ -186744,7 +186744,7 @@ synonym: "central group (medullary reticular formation)" RELATED [NeuroNames:729 synonym: "central medullary reticular complex" EXACT [FMA:70663] synonym: "central medullary reticular group" EXACT [FMA:70663] synonym: "central medullary reticular group" RELATED [NeuroNames:729] -synonym: "CMRt" RELATED ABBREVIATION [HBA:9588] +synonym: "CMRt" RELATED OMO:0003000 [HBA:9588] synonym: "nuclei centrales myelencephali" EXACT LATIN [FMA:TA] synonym: "nuclei centrales myelencephali" RELATED LATIN [NeuroNames:729] xref: FMA:70663 @@ -186980,7 +186980,7 @@ is_a: UBERON:0035016 {source="FMA"} ! tactile mechanoreceptor id: UBERON:0035970 name: calcar avis of the lateral ventricle def: "On the medial wall of the posterior cornu of the lateral ventricle is a longitudinal eminence, the calcar avis (hippocampus minor), which is an involution of the ventricular wall produced by the calcarine fissure. It is sometimes visible on ultrasonogram." [Wikipedia:Calcar_avis] -synonym: "CalA" RELATED ABBREVIATION [DHBA:12095] +synonym: "CalA" RELATED OMO:0003000 [DHBA:12095] synonym: "calcar" RELATED [BTO:0004691] synonym: "calcar avis" RELATED [BTO:0004691] synonym: "calcarine spur" RELATED [BTO:0004691] @@ -187005,7 +187005,7 @@ relationship: part_of UBERON:0002421 {source="BTO"} ! hippocampal formation id: UBERON:0035971 name: postsubiculum def: "Division of subicular cortex characterized by projections from the anterodorsal thalamic nucleus and to a lesser extent the anteroventral nucleus, bordered ventrally and laterally by the presubiculum and dorsally and medially by the retrosplenial granular a cortex.. The border is characterized by an abrupt change in the cyto- and chemoarchitecture." [NLX:144245] -synonym: "POST" RELATED ABBREVIATION [MBA:1037] +synonym: "POST" RELATED OMO:0003000 [MBA:1037] synonym: "postsubicular cortex" RELATED [NLX:144245] xref: MBA:1037 xref: neuronames:1105 @@ -187017,7 +187017,7 @@ relationship: part_of UBERON:0022230 {source="MBA"} ! retrohippocampal region id: UBERON:0035972 name: interanterodorsal nucleus of the thalamus def: "A group of nerve cells that bridges the midline of the thalamus between the anterodorsal nucleus of the thalamus of the left and right sides. According to Crosby (1962), it is more developed and consistently present in rodents than in primates (adapted from Brain Info)." [NLX:144468] -synonym: "IAD" RELATED ABBREVIATION [MBA:1113] +synonym: "IAD" RELATED OMO:0003000 [MBA:1113] synonym: "interanterodorsal nucleus of thalamus" RELATED [NLX:144468] synonym: "interanterodorsal nucleus of the thalamus" RELATED [NeuroNames:1273] synonym: "interanterodorsal nucleus thalamus" RELATED [NeuroNames:1273] @@ -187038,9 +187038,9 @@ def: "Distinct cell group in caudoventral regions of the pontine periventricular synonym: "central Gray pars 0" RELATED [NLX:144477] synonym: "central Gray part alpha" RELATED [NLX:144477] synonym: "charles Watson. - 5th ed.)" RELATED [NLX:144477] -synonym: "Inc" RELATED ABBREVIATION [DMBA:17084] -synonym: "NI" RELATED ABBREVIATION [DHBA:146034972, MBA:604] -synonym: "NI, CG0, CGalpha, CGbeta" RELATED ABBREVIATION [NLX:144477] +synonym: "Inc" RELATED OMO:0003000 [DMBA:17084] +synonym: "NI" RELATED OMO:0003000 [DHBA:146034972, MBA:604] +synonym: "NI, CG0, CGalpha, CGbeta" RELATED OMO:0003000 [NLX:144477] synonym: "nucleus incertus (Streeter)" RELATED [NeuroNames:1093] xref: DHBA:146034972 xref: DMBA:17084 @@ -187054,7 +187054,7 @@ relationship: part_of UBERON:0003023 ! pontine tegmentum id: UBERON:0035974 name: anteroventral preoptic nucleus synonym: "anteroventral preoptic nuclei" RELATED PLURAL [NLX:17240] -synonym: "AVP" RELATED ABBREVIATION [MBA:263] +synonym: "AVP" RELATED OMO:0003000 [MBA:263] xref: MBA:263 xref: neuronames:1813 xref: NLX:17240 @@ -187064,7 +187064,7 @@ relationship: part_of UBERON:0001928 {source="NIFSTD"} ! preoptic area [Term] id: UBERON:0035975 name: intergeniculate leaflet of the lateral geniculate complex -synonym: "IGL" RELATED ABBREVIATION [MBA:27] +synonym: "IGL" RELATED OMO:0003000 [MBA:27] synonym: "intergeniculate leaflet of the lateral geniculate complex" RELATED [NeuroNames:1956] synonym: "intergeniculate leaflet, lateral geniculate complex" RELATED [NeuroNames:1956] synonym: "lateral geniculate complex, intergeniculate leaflet" RELATED [NeuroNames:1956] @@ -187078,7 +187078,7 @@ relationship: part_of UBERON:0001926 {source="NIFSTD"} ! lateral geniculate body id: UBERON:0035976 name: accessory abducens nucleus def: "A small cluster of neurons in the pontine reticular formation in some mammals, containing the majority of motoneurons innervating thenretractor bulbi muscles of the eye." [NLX:144454] -synonym: "ACVI" RELATED ABBREVIATION [MBA:568] +synonym: "ACVI" RELATED OMO:0003000 [MBA:568] xref: MBA:568 xref: neuronames:1860 xref: NLX:144454 @@ -187090,7 +187090,7 @@ id: UBERON:0035977 name: bed nucleus of the accessory olfactory tract def: "A group of cells near the surface of the brain between the supraoptic nucleus and the cortical amygdalar nucleus in the rat ( Swanson-1998 ) and the mouse ( Paxinos-2001 ). It is one of five subdivisions of the medial amygdalar nucleus." [NeuroNames:1179] synonym: "accessory olfactory formation" RELATED [NeuroNames:1179] -synonym: "BA" RELATED ABBREVIATION [MBA:292] +synonym: "BA" RELATED OMO:0003000 [MBA:292] synonym: "bed nucleus accessory olfactory tract (Scalia-Winans)" RELATED [NeuroNames:1179] synonym: "bed nucleus of the accessory olfactory tract" RELATED [NeuroNames:1179] synonym: "nucleus of the accessory olfactory tract" RELATED [NeuroNames:1179] @@ -187177,7 +187177,7 @@ is_a: UBERON:0035999 ! dopaminergic cell groups id: UBERON:0036007 name: A13 dopaminergic cell group def: "A group of cells that fluoresce for dopamine and are distributed in clusters that, in the primate, are ventral and medial to the mammillothalamic tract of the hypothalamus; a few extend into the reuniens nucleus of the thalamus (Felten-1983). In the mouse A13 is located ventral to the mammillothalamic tract of the thalamus in the zona incerta (adapted from Brain Info)." [NLX:91101] -synonym: "A13" RELATED ABBREVIATION [MBA:796] +synonym: "A13" RELATED OMO:0003000 [MBA:796] synonym: "A13 cell group" RELATED [NeuroNames:1851] synonym: "A13 dopamine cells" RELATED [NeuroNames:1851] synonym: "dopaminergic group A13" RELATED [NeuroNames:1851] @@ -187227,8 +187227,8 @@ is_a: UBERON:0035999 ! dopaminergic cell groups id: UBERON:0036012 name: nucleus of the brachium of the inferior colliculus synonym: "brachial nucleus of the inferior colliculus" RELATED [NeuroNames:1112] -synonym: "BrC" RELATED ABBREVIATION [HBA:9483] -synonym: "NB" RELATED ABBREVIATION [MBA:580] +synonym: "BrC" RELATED OMO:0003000 [HBA:9483] +synonym: "NB" RELATED OMO:0003000 [MBA:580] synonym: "nucleus brachium inferior colliculus" RELATED [NeuroNames:1112] synonym: "nucleus of the brachium of the inferior colliculus" RELATED [NeuroNames:1112] xref: HBA:9483 @@ -187326,7 +187326,7 @@ relationship: only_in_taxon NCBITaxon:29132 ! Castoridae id: UBERON:0036043 name: paravermic lobule X synonym: "paravermis, flocculonodular lobe portion" RELATED [DHBA:12389] -synonym: "PV-X" RELATED ABBREVIATION [HBA:4730] +synonym: "PV-X" RELATED OMO:0003000 [HBA:4730] xref: DHBA:12389 xref: HBA:4730 is_a: UBERON:0027285 {source="cjm"} ! paravermis lobule area @@ -187335,9 +187335,9 @@ relationship: part_of UBERON:0001063 {source="HBA"} ! flocculus [Term] id: UBERON:0036044 name: cerebellum vermis lobule VIIAf -synonym: "CbVIIa1" RELATED ABBREVIATION [DHBA:12846] +synonym: "CbVIIa1" RELATED OMO:0003000 [DHBA:12846] synonym: "lobule VIIAf/crus I (folium and superior semilunar lobule)" EXACT [DHBA:12846] -synonym: "VIIAf" EXACT ABBREVIATION [HBA:4706] +synonym: "VIIAf" EXACT OMO:0003000 [HBA:4706] xref: DHBA:12846 xref: HBA:4706 is_a: UBERON:0002616 {source="DHBA"} ! regional part of brain @@ -187352,9 +187352,9 @@ is_a: UBERON:0004003 {source="FMA"} ! cerebellum hemisphere lobule [Term] id: UBERON:0036065 name: cerebellum vermis lobule VIIAt -synonym: "CbVIIa2" RELATED ABBREVIATION [DHBA:12847] +synonym: "CbVIIa2" RELATED OMO:0003000 [DHBA:12847] synonym: "lobule VIIAt/crus II (tuber and inferior semilunar lobule)" EXACT [DHBA:12847] -synonym: "VIIAt" EXACT ABBREVIATION [HBA:4707] +synonym: "VIIAt" EXACT OMO:0003000 [HBA:4707] xref: DHBA:12847 xref: HBA:4707 is_a: UBERON:0002616 {source="DHBA"} ! regional part of brain @@ -187599,7 +187599,7 @@ property_value: taxon_notes "humans, rodents" xsd:string id: UBERON:0036164 name: ambient gyrus def: "A rostral part of the parahippocampal gyrus." [NeuroNames:2072] -synonym: "AG" RELATED ABBREVIATION [DHBA:12166] +synonym: "AG" RELATED OMO:0003000 [DHBA:12166] synonym: "ambiens gyrus" EXACT [DHBA:12166] synonym: "gyrus ambiens" EXACT LATIN [DHBA:12166] synonym: "limen insula" RELATED [NeuroNames:2072] @@ -187781,7 +187781,7 @@ id: UBERON:0036218 name: secondary prosencephalon def: "The most anterior region of the forebrain including both the telencephalon and the hypothalamus in the prosomeric model." [DOI:10.1111/dgd.12348, https://github.com/obophenotype/uberon/issues/1322] comment: may contain the optic recess region (ORR) in the new model proposed by Yamamoto et al. 2017 (see https://www.ncbi.nlm.nih.gov/pubmed/28470718) -synonym: "SP" RELATED ABBREVIATION [DMBA:15567] +synonym: "SP" RELATED OMO:0003000 [DMBA:15567] xref: DMBA:15567 is_a: UBERON:0002616 {source="DMBA"} ! regional part of brain relationship: part_of UBERON:0001890 {source="DMBA", source="DOI:10.1111/dgd.12348"} ! forebrain @@ -190851,7 +190851,7 @@ name: lateral line ganglion def: "Ganglion that develops from a cranial ectodermal placode and contains sensory neurons that innervate a lateral line." [ZFA:0000120, ZFA:curator] subset: efo_slim synonym: "lateral line ganglia" EXACT PLURAL [TAO:0000120] -synonym: "LLG" EXACT ABBREVIATION [TAO:0000120] +synonym: "LLG" EXACT OMO:0003000 [TAO:0000120] xref: EFO:0003493 xref: TAO:0000120 xref: XAO:0004457 @@ -193774,7 +193774,7 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2000711 name: deep cell layer (gastrulation) def: "A multilayer of deep cells of fairly uniform thickness that forms during early epiboly (at dome stage; upon conversion of the blastodisc to the blastoderm); during gastrulation the DEL (deep cell layer) gives rise to the epiblast and hypoblast. Kimmel et al, 1995." [ZFIN:curator] -synonym: "DEL" EXACT ABBREVIATION [ZFIN:ZDB-PUB-961014-576] +synonym: "DEL" EXACT OMO:0003000 [ZFIN:ZDB-PUB-961014-576] synonym: "DEL cells" EXACT PLURAL [TAO:0000711] xref: ZFA:0000711 is_a: UBERON:0002050 ! embryonic structure @@ -204470,7 +204470,7 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2005093 name: nasal vein -synonym: "NV" EXACT ABBREVIATION [TAO:0005093] +synonym: "NV" EXACT OMO:0003000 [TAO:0005093] xref: ZFA:0005093 is_a: UBERON:0001638 ! vein relationship: part_of UBERON:0002200 ! vasculature of head @@ -220910,7 +220910,7 @@ id: UBERON:7500052 name: lower fourth secondary molar tooth def: "The molar tooth of the lower jaw that is phylogenetically number 4." [https://orcid.org/0000-0003-2699-3066] synonym: "lower fourth permanent molar tooth" EXACT [] -synonym: "m4" RELATED ABBREVIATION [] +synonym: "m4" RELATED OMO:0003000 [] is_a: UBERON:0003667 ! lower jaw molar is_a: UBERON:0013618 ! secondary molar tooth relationship: dc-contributor https://orcid.org/0000-0003-2699-3066 ! Meghan Balk @@ -220920,7 +220920,7 @@ id: UBERON:7500053 name: lower fourth secondary premolar tooth def: "The premolar tooth of the lower jaw that is phylogenetically number 4." [https://orcid.org/0000-0003-2699-3066] synonym: "lower fourth permanent premolar tooth" EXACT [] -synonym: "p4" RELATED ABBREVIATION [] +synonym: "p4" RELATED OMO:0003000 [] intersection_of: UBERON:0018647 ! premolar tooth 4 intersection_of: part_of UBERON:0001710 ! lower jaw region intersection_of: part_of UBERON:0007774 ! secondary dentition @@ -220931,7 +220931,7 @@ id: UBERON:7500054 name: lower third secondary premolar tooth def: "The premolar tooth of the lower jaw that is phylogenetically number 3." [https://orcid.org/0000-0003-2699-3066] synonym: "lower third permanent premolar tooth" EXACT [] -synonym: "p3" RELATED ABBREVIATION [] +synonym: "p3" RELATED OMO:0003000 [] is_a: UBERON:0016943 ! lower premolar tooth is_a: UBERON:0017270 ! secondary premolar tooth relationship: dc-contributor https://orcid.org/0000-0003-2699-3066 ! Meghan Balk @@ -220959,7 +220959,7 @@ relationship: dc-contributor https://orcid.org/0000-0003-2699-3066 ! Meghan Balk id: UBERON:7500057 name: upper fourth secondary molar tooth def: "The molar tooth of the upper jaw that is phylogenetically number 4." [https://orcid.org/0000-0003-2699-3066] -synonym: "M4" RELATED ABBREVIATION [] +synonym: "M4" RELATED OMO:0003000 [] synonym: "upper fourth permanent molar tooth" EXACT [] is_a: UBERON:0003666 ! upper jaw molar is_a: UBERON:0013618 ! secondary molar tooth @@ -220969,7 +220969,7 @@ relationship: dc-contributor https://orcid.org/0000-0003-2699-3066 ! Meghan Balk id: UBERON:7500058 name: upper fourth secondary premolar tooth def: "The premolar tooth of the upper jaw that is phylogenetically number 4." [https://orcid.org/0000-0003-2699-3066] -synonym: "P4" RELATED ABBREVIATION [] +synonym: "P4" RELATED OMO:0003000 [] synonym: "upper fourth permanent premolar tooth" EXACT [] is_a: UBERON:0016944 ! upper premolar tooth is_a: UBERON:0017270 ! secondary premolar tooth @@ -220979,7 +220979,7 @@ relationship: dc-contributor https://orcid.org/0000-0003-2699-3066 ! Meghan Balk id: UBERON:7500059 name: upper third secondary premolar tooth def: "The premolar tooth of the upper jaw that is phylogenetically number 3." [https://orcid.org/0000-0003-2699-3066] -synonym: "P3" RELATED ABBREVIATION [] +synonym: "P3" RELATED OMO:0003000 [] synonym: "upper third permanent premolar tooth" EXACT [] is_a: UBERON:0016944 ! upper premolar tooth is_a: UBERON:0017270 ! secondary premolar tooth @@ -222251,7 +222251,7 @@ relationship: dc-contributor https://orcid.org/0000-0002-2825-0621 ! Paola Ronca id: UBERON:8410037 name: high endothelial venule def: "High endothelial venules are specialized blood vessels adapted for lymphocyte trafficking. They form a spatially organized network, which controls both the type of lymphocyte and the site of entry into lymphoid tissues. Uniquely, high endothelial venules express vascular addressins that regulate lymphocyte entry into lymphoid organs. They perform this function in all lymphoid organs except the spleen." [http://orcid.org/0000-0003-3440-1876, PMID:28217126] -synonym: "HEV" BROAD ABBREVIATION [] +synonym: "HEV" BROAD OMO:0003000 [] xref: BTO:0004528 xref: NCIT:C32739 is_a: UBERON:0035428 ! postcapillary venule @@ -222819,10 +222819,10 @@ comment: This term was split out from primary visual cortex as many of the axiom synonym: "area 17 of Brodmann" RELATED [Wikipedia:Visual_cortex] synonym: "area 17 of Brodmann-1909" EXACT [BIRNLEX:1748] synonym: "area striata" RELATED [] -synonym: "B09-17" BROAD ABBREVIATION [BIRNLEX:1748, NIFSTD:SumsDB_abbrevSource] +synonym: "B09-17" BROAD OMO:0003000 [BIRNLEX:1748, NIFSTD:SumsDB_abbrevSource] synonym: "b09-17" EXACT [BIRNLEX:1748] -synonym: "BA17" EXACT ABBREVIATION [] -synonym: "BA17" RELATED ABBREVIATION [Wikipedia:Visual_cortex] +synonym: "BA17" EXACT OMO:0003000 [] +synonym: "BA17" RELATED OMO:0003000 [Wikipedia:Visual_cortex] synonym: "Brodmann area 17" EXACT [Wikipedia:Visual_cortex] synonym: "Brodmann area 17" RELATED [Wikipedia:Visual_cortex] synonym: "Brodmann area 17, striate" EXACT [BIRNLEX:1748] @@ -223007,7 +223007,7 @@ def: "A group of neurons in the floor of the fourth ventricle, in close proximit synonym: "nuclei perihypoglossales" EXACT [WikipediaVersioned:Perihypoglossal_nuclei&oldid=821664008] synonym: "perihypoglossal complex" EXACT [WikipediaVersioned:Perihypoglossal_nuclei&oldid=821664008] synonym: "perihypoglossal nuclear complex" EXACT [WikipediaVersioned:Perihypoglossal_nuclei&oldid=821664008] -synonym: "PHY" EXACT ABBREVIATION [MBA:154] +synonym: "PHY" EXACT OMO:0003000 [MBA:154] synonym: "satellite nuclei" EXACT [WikipediaVersioned:Perihypoglossal_nuclei&oldid=821664008] xref: MBA:154 is_a: UBERON:0002308 ! nucleus of brain @@ -223443,7 +223443,7 @@ relationship: part_of UBERON:0002104 ! visual system id: UBERON:8440072 name: lateral tegmental nucleus def: "A nucleus of the brain that is embedded in the pontine tegmentum, it is defined on the basis of inputs from the lateral hypothalamic area and central amygdalar nucleus, it is located ventral to the locus ceruleus, dorsal to Barrington's nucleus, lateral to the laterodorsal tegmental nucleus, and medial to the midbrain trigeminal nucleus." [neuronames:1957] -synonym: "LTN" EXACT ABBREVIATION [MBA:283] +synonym: "LTN" EXACT OMO:0003000 [MBA:283] xref: MBA:283 xref: neuronames:1957 is_a: UBERON:0002308 ! nucleus of brain @@ -223456,7 +223456,7 @@ relationship: ventral_to UBERON:0002148 ! locus ceruleus id: UBERON:8440073 name: magnocellular reticular nucleus def: "A nucleus of the brain that is the most ventral portion of the gigantocellular nucleus in the medullary reticular formation, between the lateral paragigantocellular nucleus and the midline or nucleus raphe magnus. Functionally it belongs to the reticular formation (functional) of the subcortical motor system." [NeuroNames:1801] -synonym: "MARN" EXACT ABBREVIATION [MBA:307] +synonym: "MARN" EXACT OMO:0003000 [MBA:307] xref: MBA:307 is_a: UBERON:0002308 ! nucleus of brain relationship: dc-contributor https://orcid.org/0000-0001-7258-9596 ! Shawn Zheng Kai Tan @@ -223468,8 +223468,8 @@ id: UBERON:8440074 name: interstitial nucleus of the vestibular nerve def: "A cluster of large nerve cells distributed in the vestibular component of vestibulocochlear nerve fibers that functionally belong to the vestibulomotor regions of the behavioral control column." [NeuroNames:719] comment: Interstitial nucleus of the vestibular nerve is revealed in Nissl stained sections and stain for acetylcholinesterase. {xref="NeuroNames:719"} -synonym: "INV" EXACT ABBREVIATION [MBA:76] -synonym: "ISVe" EXACT ABBREVIATION [NeuroNames:719] +synonym: "INV" EXACT OMO:0003000 [MBA:76] +synonym: "ISVe" EXACT OMO:0003000 [NeuroNames:719] xref: MBA:76 xref: NeuroNames:719 is_a: UBERON:0000125 ! neural nucleus @@ -224498,7 +224498,7 @@ id: UBERON:8600018 name: neuroendocrine system def: "A regulatory system of the body that integrates the nervous system and the endocrine system. This system is formed by specialized neuroendocrine cells located mainly in the nervous system and neuroendocrine glands. However, they can also be found as either single cells or small clusters of cells dispersed throughout the surface epithelium of different tissues. The neuroendocrine system functions through the release of neurotransmitters and neurohormones, enabling communication between the endocrine and nervous systems to govern vitally important processes that include growth, reproduction, metabolism and energy homeostasis, electrolyte and water balance, and responses to stress." [doi:10.1016/B978-0-12-375097-6.10001-0, PMID:15481802, PMID:17003257, PMID:25905254, Wikipedia:endocrinology] comment: In vertebrates, the hypothalamic-pituitary-target organ axis (H-P axis), the autonomic nervous system (ANS) and the diffuse neuroendocrine or APUD system contribute to the neuroendocrine system. {xref="PMID:15481802"} -synonym: "NES" RELATED ABBREVIATION [PMID:15481802] +synonym: "NES" RELATED OMO:0003000 [PMID:15481802] is_a: UBERON:0000467 ! anatomical system relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 relationship: overlaps UBERON:0000949 ! endocrine system @@ -224509,7 +224509,7 @@ property_value: dcterms-date "2023-08-29T10:49:45Z" xsd:dateTime id: UBERON:8600019 name: placental basal plate def: "A maternal facing structure of the placenta, adjacent to the intervillous space. Major components of the placental basal plate include decidua basalis, fibrinoid, connective tissue, extravillous trophoblasts, and residues of degenerating villi and maternal vessels." [PMID:17059842, PMID:32108320] -synonym: "PBP" RELATED ABBREVIATION [PMID:31002314] +synonym: "PBP" RELATED OMO:0003000 [PMID:31002314] synonym: "placenta basal plate" EXACT [PMID:32108320] is_a: UBERON:0010000 ! multicellular anatomical structure relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 From 1d60aba29e0603742ba97c9a5c129130e71433d2 Mon Sep 17 00:00:00 2001 From: Charles Tapley Hoyt Date: Sun, 1 Oct 2023 13:12:03 +0200 Subject: [PATCH 2/6] Update uberon-edit.obo --- src/ontology/uberon-edit.obo | 1 + 1 file changed, 1 insertion(+) diff --git a/src/ontology/uberon-edit.obo b/src/ontology/uberon-edit.obo index 30a8997d0f..b79c9311f1 100644 --- a/src/ontology/uberon-edit.obo +++ b/src/ontology/uberon-edit.obo @@ -96,6 +96,7 @@ property_value: dc-contributor https://orcid.org/0000-0003-1980-3228 property_value: dc-contributor https://orcid.org/0000-0003-2105-2283 property_value: dc-contributor https://orcid.org/0000-0003-2338-2550 property_value: dc-contributor https://orcid.org/0000-0003-3691-0324 +property_value: dc-contributor https://orcid.org/0000-0003-4423-4370 property_value: dc-contributor https://www.wikidata.org/wiki/Q11695472 property_value: dc-contributor https://www.wikidata.org/wiki/Q23809253 property_value: dc-contributor https://www.wikidata.org/wiki/Q4964264 From 85b57531a6826eb0f2d332593723874b2952529f Mon Sep 17 00:00:00 2001 From: Anita Caron Date: Mon, 16 Oct 2023 21:07:35 +0100 Subject: [PATCH 3/6] update abbreviation annotation in sparql_test check --- src/sparql/label-synonym-polysemy-violation.sparql | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/src/sparql/label-synonym-polysemy-violation.sparql b/src/sparql/label-synonym-polysemy-violation.sparql index df9dd183c5..a2e17243ee 100644 --- a/src/sparql/label-synonym-polysemy-violation.sparql +++ b/src/sparql/label-synonym-polysemy-violation.sparql @@ -21,7 +21,7 @@ SELECT ?entity ?property ?value WHERE { owl:annotatedSource ?entity; owl:annotatedProperty oboInOwl:hasExactSynonym; owl:annotatedTarget ?name; - oboInOwl:hasSynonymType . + oboInOwl:hasSynonymType . } BIND(UCASE((?name)) AS ?iname) From 981aaca9fdf14ec8f1ce3aa5b4273c36c87f649e Mon Sep 17 00:00:00 2001 From: Anita Caron Date: Thu, 26 Oct 2023 11:59:33 +0100 Subject: [PATCH 4/6] normalize uberon-edit --- src/ontology/uberon-edit.obo | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/src/ontology/uberon-edit.obo b/src/ontology/uberon-edit.obo index 055c7b5bb0..f5d838bc25 100644 --- a/src/ontology/uberon-edit.obo +++ b/src/ontology/uberon-edit.obo @@ -27,7 +27,6 @@ subsetdef: uberon_slim "Uberon slim - subset that excludes obscure terms and dee subsetdef: unverified_taxonomic_grouping "Indicates that the class encompasses classes from other AOs that have not been verified" subsetdef: upper_level "abstract upper-level terms not directly useful for analysis" subsetdef: vertebrate_core "core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO" -synonymtypedef: OMO:0003000 "abbreviation" synonymtypedef: BRAIN_NAME_ABV "brain name abbreviations (drosophila)" synonymtypedef: COMPARATIVE_PREFERRED "preferred term in the context of comparative anatomy" synonymtypedef: DEPRECATED "A historic synonym, no longer encouraged" @@ -40,6 +39,7 @@ synonymtypedef: LATIN "latin term" synonymtypedef: MISSPELLING "a mis-spelling that is in common use and thus recorded" synonymtypedef: NON_AMNIOTE "synonym that is inappropriate for amniotes" synonymtypedef: NON_MAMMAL "synonym that is inappropriate for mammals" +synonymtypedef: OMO:0003000 "abbreviation" synonymtypedef: PENDING_REVIEW "expert consultation and attribution required" synonymtypedef: PLURAL "plural term" synonymtypedef: SENSU "taxonomic disambiguation" From 79bae49585564bd3567fb759a20566cf1100240a Mon Sep 17 00:00:00 2001 From: Anita Caron Date: Thu, 26 Oct 2023 13:23:39 +0100 Subject: [PATCH 5/6] remove `synonymtypedef: ABBREVIATION` in uberon-edit --- src/ontology/uberon-edit.obo | 1 - 1 file changed, 1 deletion(-) diff --git a/src/ontology/uberon-edit.obo b/src/ontology/uberon-edit.obo index f5d838bc25..a21e372dba 100644 --- a/src/ontology/uberon-edit.obo +++ b/src/ontology/uberon-edit.obo @@ -39,7 +39,6 @@ synonymtypedef: LATIN "latin term" synonymtypedef: MISSPELLING "a mis-spelling that is in common use and thus recorded" synonymtypedef: NON_AMNIOTE "synonym that is inappropriate for amniotes" synonymtypedef: NON_MAMMAL "synonym that is inappropriate for mammals" -synonymtypedef: OMO:0003000 "abbreviation" synonymtypedef: PENDING_REVIEW "expert consultation and attribution required" synonymtypedef: PLURAL "plural term" synonymtypedef: SENSU "taxonomic disambiguation" From b18f33ff1df1b90bcee947539128bd65713f96d4 Mon Sep 17 00:00:00 2001 From: Anita Caron Date: Thu, 26 Oct 2023 13:56:02 +0100 Subject: [PATCH 6/6] lower missing_synonymtype_declaration's severity to WARN --- src/ontology/profile.txt | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/src/ontology/profile.txt b/src/ontology/profile.txt index f8fe415222..1e35565903 100644 --- a/src/ontology/profile.txt +++ b/src/ontology/profile.txt @@ -27,6 +27,6 @@ ERROR equivalent_class_axiom_no_genus ERROR illegal_use_of_built_in_vocabulary ERROR invalid_entity_uri ERROR missing_subset_declaration -ERROR missing_synonymtype_declaration +WARN missing_synonymtype_declaration ERROR misused_replaced_by ERROR multiple_equivalent_class_definitions