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Fixes #2417 make neck general #3060

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Sep 11, 2023
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Fixes #2417 make neck general #3060

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c493188
Fixes #2417 make neck general
aleixpuigb Sep 7, 2023
ffb1b31
Remove part of craniocervical region
aleixpuigb Sep 7, 2023
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9 changes: 4 additions & 5 deletions src/ontology/uberon-edit.obo
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Original file line number Diff line number Diff line change
Expand Up @@ -4283,10 +4283,10 @@ xref: UMLS:C0230976 {source="ncithesaurus:Amniotic_Cavity"}
xref: VHOG:0000855
xref: Wikipedia:Amniotic_cavity
is_a: UBERON:0000464 ! anatomical space
relationship: location_of UBERON:0000173 ! amniotic fluid
relationship: develops_from UBERON:0000087 {source="EHDAA2"} ! inner cell mass
relationship: develops_from UBERON:0009742 {source="cjm"} ! proamniotic cavity
relationship: has_quality PATO:0000608 ! closed
relationship: location_of UBERON:0000173 ! amniotic fluid
relationship: part_of UBERON:0016887 ! entire extraembryonic component
relationship: surrounded_by UBERON:0005971 {source="cjm"} ! amniotic fold
property_value: depicted_by "http://upload.wikimedia.org/wikipedia/commons/5/55/Gray31.png" xsd:anyURI
Expand Down Expand Up @@ -9394,9 +9394,7 @@ xref: Wikipedia:Neck
is_a: UBERON:0000475 ! organism subdivision
relationship: anteriorly_connected_to UBERON:0000033 ! head
relationship: dubious_for_taxon NCBITaxon:32443 {source="ISBN:9780674021839"} ! Teleostei
relationship: only_in_taxon NCBITaxon:8287 ! Sarcopterygii
relationship: part_of UBERON:0000153 ! anterior region of body
relationship: part_of UBERON:0007811 ! craniocervical region
relationship: posteriorly_connected_to UBERON:0002100 ! trunk
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Given this comment, should relationship: part_of UBERON:0007811 ! craniocervical region be removed?

property_value: curator_notes "true necks are considered to be present when the pectoral girdle is separate from the skull - Tiktaalik is the earliest known fish to have a true neck." xsd:string
property_value: depicted_by "https://upload.wikimedia.org/wikipedia/commons/9/99/Female_neck.jpg" xsd:anyURI
Expand Down Expand Up @@ -12311,8 +12309,8 @@ xref: ZFA:0001655
is_a: UBERON:0002323 {source="MA"} ! coelemic cavity lumen
intersection_of: UBERON:0002553 ! anatomical cavity
intersection_of: luminal_space_of UBERON:0002406 ! pericardial sac
relationship: location_of UBERON:0002409 ! pericardial fluid
relationship: develops_from UBERON:0003887 {source="Wikipedia"} ! intraembryonic coelom
relationship: location_of UBERON:0002409 ! pericardial fluid
relationship: part_of UBERON:0002406 {source="FMA"} ! pericardial sac
relationship: present_in_taxon NCBITaxon:7718 {source="PMID:20959416"} ! Ciona
relationship: surrounded_by UBERON:0002357 ! serous pericardium
Expand Down Expand Up @@ -73139,8 +73137,8 @@ id: UBERON:0003532
name: hindlimb skin
def: "A zone of skin that is part of a hindlimb [Automatically generated definition]." [OBOL:automatic]
synonym: "hind limb skin" EXACT [OBOL:automatic]
synonym: "lower limb skin" EXACT [FMA:23102]
synonym: "lower limb skin" EXACT [https://orcid.org/0000-0002-0819-0473]
synonym: "lower limb skin" EXACT [FMA:23102]
synonym: "skin of hind limb" EXACT [OBOL:automatic]
synonym: "skin of hindlimb" EXACT [OBOL:automatic]
synonym: "skin of lower extremity" EXACT [OBOL:automatic]
Expand Down Expand Up @@ -90908,6 +90906,7 @@ xref: Wikipedia:Jugular_vein
is_a: UBERON:0001638 ! vein
relationship: drains UBERON:0000033 ! head
relationship: part_of UBERON:0000974 {gci_filler="NCBITaxon:40674", gci_relation="in_taxon"} ! neck
relationship: part_of UBERON:0000974 {gci_filler="NCBITaxon:8287", gci_relation="in_taxon"} ! neck
property_value: depicted_by "http://upload.wikimedia.org/wikipedia/commons/f/f8/Gray558.png" xsd:anyURI

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