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Changing contains to be location_of. See https://github.com/oborel/obo-relations/pull/739 #2998

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merged 3 commits into from
Sep 5, 2023
Merged

Changing contains to be location_of. See https://github.com/oborel/obo-relations/pull/739 #2998

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bcb7cb4
Changing contains to be location_of. See https://github.com/oborel/ob…
cmungall Jul 28, 2023
4f741a3
Merge branch 'master' into ro-pr-739
anitacaron Aug 18, 2023
91be6f3
Merge branch 'master' into ro-pr-739
Sep 4, 2023
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20 changes: 10 additions & 10 deletions src/ontology/uberon-edit.obo
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Original file line number Diff line number Diff line change
Expand Up @@ -4283,7 +4283,7 @@ xref: UMLS:C0230976 {source="ncithesaurus:Amniotic_Cavity"}
xref: VHOG:0000855
xref: Wikipedia:Amniotic_cavity
is_a: UBERON:0000464 ! anatomical space
relationship: contains UBERON:0000173 ! amniotic fluid
relationship: location_of UBERON:0000173 ! amniotic fluid
relationship: develops_from UBERON:0000087 {source="EHDAA2"} ! inner cell mass
relationship: develops_from UBERON:0009742 {source="cjm"} ! proamniotic cavity
relationship: has_quality PATO:0000608 ! closed
Expand Down Expand Up @@ -4526,8 +4526,8 @@ xref: Wikipedia:Subarachnoid_space
intersection_of: UBERON:0000464 ! anatomical space
intersection_of: adjacent_to UBERON:0002361 ! pia mater
intersection_of: adjacent_to UBERON:0002362 ! arachnoid mater
relationship: contains UBERON:0001359 ! cerebrospinal fluid
relationship: contains UBERON:0001981 {source="ISBN:0471888893"} ! blood vessel
relationship: location_of UBERON:0001359 ! cerebrospinal fluid
relationship: location_of UBERON:0001981 {source="ISBN:0471888893"} ! blood vessel
relationship: part_of UBERON:0010743 ! meningeal cluster
property_value: depicted_by "http://upload.wikimedia.org/wikipedia/commons/5/5f/Gray769-en.svg" xsd:anyURI
property_value: depicted_by "http://upload.wikimedia.org/wikipedia/commons/f/f8/Gray769.png" xsd:anyURI
Expand Down Expand Up @@ -12311,7 +12311,7 @@ xref: ZFA:0001655
is_a: UBERON:0002323 {source="MA"} ! coelemic cavity lumen
intersection_of: UBERON:0002553 ! anatomical cavity
intersection_of: luminal_space_of UBERON:0002406 ! pericardial sac
relationship: contains UBERON:0002409 ! pericardial fluid
relationship: location_of UBERON:0002409 ! pericardial fluid
relationship: develops_from UBERON:0003887 {source="Wikipedia"} ! intraembryonic coelom
relationship: part_of UBERON:0002406 {source="FMA"} ! pericardial sac
relationship: present_in_taxon NCBITaxon:7718 {source="PMID:20959416"} ! Ciona
Expand Down Expand Up @@ -114844,7 +114844,7 @@ xref: FMA:54721
xref: neuronames:2359
xref: SCTID:264194004
is_a: UBERON:0002553 {source="FMA"} ! anatomical cavity
relationship: contains UBERON:0000007 ! pituitary gland
relationship: location_of UBERON:0000007 ! pituitary gland
relationship: part_of UBERON:0003689 ! sella turcica

[Term]
Expand Down Expand Up @@ -133458,7 +133458,7 @@ def: "An organ that contains spermaceti." [Wikipedia:Spermaceti_organ]
subset: organ_slim
xref: Wikipedia:Spermaceti_organ
intersection_of: UBERON:0000062 ! organ
intersection_of: contains UBERON:0009755 ! spermaceti
intersection_of: location_of UBERON:0009755 ! spermaceti
relationship: part_of UBERON:0000033 ! head
property_value: depicted_by "http://upload.wikimedia.org/wikipedia/commons/3/3b/Sperm_whale_head_anatomy.svg" xsd:anyURI

Expand Down Expand Up @@ -163821,7 +163821,7 @@ xref: Wikipedia:Virchow-Robin_space
intersection_of: UBERON:0000464 ! anatomical space
intersection_of: adjacent_to UBERON:0001981 ! blood vessel
intersection_of: adjacent_to UBERON:0002361 ! pia mater
relationship: contains UBERON:0001359 ! cerebrospinal fluid
relationship: location_of UBERON:0001359 ! cerebrospinal fluid
relationship: part_of UBERON:0010743 ! meningeal cluster
property_value: depicted_by "https://static-content.springer.com/image/art%3A10.1007%2Fs11064-015-1581-6/MediaObjects/11064_2015_1581_Fig3_HTML.gif" xsd:anyURI

Expand Down Expand Up @@ -169454,7 +169454,7 @@ synonym: "fossa ovarica" EXACT LATIN [Wikipedia:Ovarian_fossa]
xref: FMA:21030
xref: Wikipedia:Ovarian_fossa
is_a: UBERON:0000464 ! anatomical space
relationship: contains UBERON:0000992 ! ovary
relationship: location_of UBERON:0000992 ! ovary
relationship: part_of UBERON:0002355 ! pelvic region of trunk
relationship: part_of UBERON:0005449 ! greater sac

Expand Down Expand Up @@ -181640,7 +181640,7 @@ synonym: "sinuses of vibrissae" RELATED PLURAL []
synonym: "upper cavernous sinus" NARROW SENSU []
synonym: "vibrissa sinus" EXACT []
is_a: UBERON:0000064 ! organ part
relationship: contains UBERON:0000178 ! blood
relationship: has_part UBERON:0000178 ! blood
relationship: innervated_by UBERON:0001027 ! sensory nerve
relationship: part_of UBERON:0011933 ! vibrissa unit
relationship: surrounds UBERON:0011937 ! vibrissa root sheath
Expand Down Expand Up @@ -186837,7 +186837,7 @@ xref: FMA:18274
xref: SCTID:367722009
intersection_of: UBERON:0000464 ! anatomical space
intersection_of: luminal_space_of UBERON:0001301 ! epididymis
relationship: contains UBERON:0006530 {source="FMA"} ! seminal fluid
relationship: location_of UBERON:0006530 {source="FMA"} ! seminal fluid

[Term]
id: UBERON:0035957
Expand Down
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