From bcb7cb4e5f5b4aaa418504d7960815adb10bf9d1 Mon Sep 17 00:00:00 2001 From: cmungall Date: Thu, 27 Jul 2023 19:32:13 -0700 Subject: [PATCH] Changing contains to be location_of. See https://github.com/oborel/obo-relations/pull/739 --- src/ontology/uberon-edit.obo | 20 ++++++++++---------- 1 file changed, 10 insertions(+), 10 deletions(-) diff --git a/src/ontology/uberon-edit.obo b/src/ontology/uberon-edit.obo index 6fb7b62d61..dc036f98a8 100644 --- a/src/ontology/uberon-edit.obo +++ b/src/ontology/uberon-edit.obo @@ -4283,7 +4283,7 @@ xref: UMLS:C0230976 {source="ncithesaurus:Amniotic_Cavity"} xref: VHOG:0000855 xref: Wikipedia:Amniotic_cavity is_a: UBERON:0000464 ! anatomical space -relationship: contains UBERON:0000173 ! amniotic fluid +relationship: location_of UBERON:0000173 ! amniotic fluid relationship: develops_from UBERON:0000087 {source="EHDAA2"} ! inner cell mass relationship: develops_from UBERON:0009742 {source="cjm"} ! proamniotic cavity relationship: has_quality PATO:0000608 ! closed @@ -4526,8 +4526,8 @@ xref: Wikipedia:Subarachnoid_space intersection_of: UBERON:0000464 ! anatomical space intersection_of: adjacent_to UBERON:0002361 ! pia mater intersection_of: adjacent_to UBERON:0002362 ! arachnoid mater -relationship: contains UBERON:0001359 ! cerebrospinal fluid -relationship: contains UBERON:0001981 {source="ISBN:0471888893"} ! blood vessel +relationship: location_of UBERON:0001359 ! cerebrospinal fluid +relationship: location_of UBERON:0001981 {source="ISBN:0471888893"} ! blood vessel relationship: part_of UBERON:0010743 ! meningeal cluster property_value: depicted_by "http://upload.wikimedia.org/wikipedia/commons/5/5f/Gray769-en.svg" xsd:anyURI property_value: depicted_by "http://upload.wikimedia.org/wikipedia/commons/f/f8/Gray769.png" xsd:anyURI @@ -12312,7 +12312,7 @@ xref: ZFA:0001655 is_a: UBERON:0002323 {source="MA"} ! coelemic cavity lumen intersection_of: UBERON:0002553 ! anatomical cavity intersection_of: luminal_space_of UBERON:0002406 ! pericardial sac -relationship: contains UBERON:0002409 ! pericardial fluid +relationship: location_of UBERON:0002409 ! pericardial fluid relationship: develops_from UBERON:0003887 {source="Wikipedia"} ! intraembryonic coelom relationship: part_of UBERON:0002406 {source="FMA"} ! pericardial sac relationship: present_in_taxon NCBITaxon:7718 {source="PMID:20959416"} ! Ciona @@ -114841,7 +114841,7 @@ xref: FMA:54721 xref: neuronames:2359 xref: SCTID:264194004 is_a: UBERON:0002553 {source="FMA"} ! anatomical cavity -relationship: contains UBERON:0000007 ! pituitary gland +relationship: location_of UBERON:0000007 ! pituitary gland relationship: part_of UBERON:0003689 ! sella turcica [Term] @@ -133455,7 +133455,7 @@ def: "An organ that contains spermaceti." [Wikipedia:Spermaceti_organ] subset: organ_slim xref: Wikipedia:Spermaceti_organ intersection_of: UBERON:0000062 ! organ -intersection_of: contains UBERON:0009755 ! spermaceti +intersection_of: location_of UBERON:0009755 ! spermaceti relationship: part_of UBERON:0000033 ! head property_value: depicted_by "http://upload.wikimedia.org/wikipedia/commons/3/3b/Sperm_whale_head_anatomy.svg" xsd:anyURI @@ -163816,7 +163816,7 @@ xref: Wikipedia:Virchow-Robin_space intersection_of: UBERON:0000464 ! anatomical space intersection_of: adjacent_to UBERON:0001981 ! blood vessel intersection_of: adjacent_to UBERON:0002361 ! pia mater -relationship: contains UBERON:0001359 ! cerebrospinal fluid +relationship: location_of UBERON:0001359 ! cerebrospinal fluid relationship: part_of UBERON:0010743 ! meningeal cluster property_value: depicted_by "https://static-content.springer.com/image/art%3A10.1007%2Fs11064-015-1581-6/MediaObjects/11064_2015_1581_Fig3_HTML.gif" xsd:anyURI @@ -169449,7 +169449,7 @@ synonym: "fossa ovarica" EXACT LATIN [Wikipedia:Ovarian_fossa] xref: FMA:21030 xref: Wikipedia:Ovarian_fossa is_a: UBERON:0000464 ! anatomical space -relationship: contains UBERON:0000992 ! ovary +relationship: location_of UBERON:0000992 ! ovary relationship: part_of UBERON:0002355 ! pelvic region of trunk relationship: part_of UBERON:0005449 ! greater sac @@ -181635,7 +181635,7 @@ synonym: "sinuses of vibrissae" RELATED PLURAL [] synonym: "upper cavernous sinus" NARROW SENSU [] synonym: "vibrissa sinus" EXACT [] is_a: UBERON:0000064 ! organ part -relationship: contains UBERON:0000178 ! blood +relationship: has_part UBERON:0000178 ! blood relationship: innervated_by UBERON:0001027 ! sensory nerve relationship: part_of UBERON:0011933 ! vibrissa unit relationship: surrounds UBERON:0011937 ! vibrissa root sheath @@ -186831,7 +186831,7 @@ xref: FMA:18274 xref: SCTID:367722009 intersection_of: UBERON:0000464 ! anatomical space intersection_of: luminal_space_of UBERON:0001301 ! epididymis -relationship: contains UBERON:0006530 {source="FMA"} ! seminal fluid +relationship: location_of UBERON:0006530 {source="FMA"} ! seminal fluid [Term] id: UBERON:0035957