From f8b5ff4b913794194a18171aa90ad983a7147897 Mon Sep 17 00:00:00 2001 From: Aleix Puig <94959119+aleixpuigb@users.noreply.github.com> Date: Mon, 4 Nov 2024 09:07:54 +0000 Subject: [PATCH] Refresh imports after obo PR slim update (#3400) Refresh imports after obo PR slim update --- src/ontology/bridge/cl-bridge-to-caro.owl | 2 +- src/ontology/bridge/cl-bridge-to-ehdaa2.owl | 2 +- src/ontology/bridge/cl-bridge-to-emapa.owl | 2 +- src/ontology/bridge/cl-bridge-to-fbbt.owl | 2 +- src/ontology/bridge/cl-bridge-to-fma.owl | 2 +- src/ontology/bridge/cl-bridge-to-go.owl | 2 +- src/ontology/bridge/cl-bridge-to-kupo.owl | 2 +- src/ontology/bridge/cl-bridge-to-ma.owl | 2 +- src/ontology/bridge/cl-bridge-to-ncit.owl | 2 +- src/ontology/bridge/cl-bridge-to-sctid.owl | 2 +- src/ontology/bridge/cl-bridge-to-wbbt.owl | 2 +- src/ontology/bridge/cl-bridge-to-xao.owl | 2 +- src/ontology/bridge/cl-bridge-to-zfa.owl | 2 +- src/ontology/bridge/uberon-bridge-to-aeo.owl | 2 +- src/ontology/bridge/uberon-bridge-to-bfo.owl | 2 +- src/ontology/bridge/uberon-bridge-to-caro.owl | 2 +- src/ontology/bridge/uberon-bridge-to-dhba.owl | 2 +- .../bridge/uberon-bridge-to-ehdaa2.owl | 2 +- .../bridge/uberon-bridge-to-emapa.owl | 2 +- src/ontology/bridge/uberon-bridge-to-fbbt.owl | 2 +- src/ontology/bridge/uberon-bridge-to-fbdv.owl | 2 +- src/ontology/bridge/uberon-bridge-to-fma.owl | 2 +- src/ontology/bridge/uberon-bridge-to-go.owl | 2 +- src/ontology/bridge/uberon-bridge-to-hao.owl | 2 +- src/ontology/bridge/uberon-bridge-to-hba.owl | 2 +- .../bridge/uberon-bridge-to-hsapdv.owl | 2 +- src/ontology/bridge/uberon-bridge-to-kupo.owl | 2 +- src/ontology/bridge/uberon-bridge-to-ma.owl | 2 +- .../bridge/uberon-bridge-to-mmusdv.owl | 2 +- src/ontology/bridge/uberon-bridge-to-ncit.owl | 2 +- src/ontology/bridge/uberon-bridge-to-oges.owl | 2 +- src/ontology/bridge/uberon-bridge-to-pba.owl | 2 +- .../bridge/uberon-bridge-to-sctid.owl | 2 +- src/ontology/bridge/uberon-bridge-to-spd.owl | 2 +- src/ontology/bridge/uberon-bridge-to-tads.owl | 2 +- src/ontology/bridge/uberon-bridge-to-tgma.owl | 2 +- src/ontology/bridge/uberon-bridge-to-wbbt.owl | 2 +- src/ontology/bridge/uberon-bridge-to-wbls.owl | 2 +- src/ontology/bridge/uberon-bridge-to-xao.owl | 2 +- src/ontology/bridge/uberon-bridge-to-zfa.owl | 2 +- src/ontology/bridge/uberon-bridge-to-zfs.owl | 2 +- src/ontology/imports/merged_import.owl | 61 ++++++++++--------- 42 files changed, 72 insertions(+), 71 deletions(-) diff --git a/src/ontology/bridge/cl-bridge-to-caro.owl b/src/ontology/bridge/cl-bridge-to-caro.owl index 0bad313de..2c55049aa 100644 --- a/src/ontology/bridge/cl-bridge-to-caro.owl +++ b/src/ontology/bridge/cl-bridge-to-caro.owl @@ -8,7 +8,7 @@ xmlns:xsd="http://www.w3.org/2001/XMLSchema#" xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"> - + diff --git a/src/ontology/bridge/cl-bridge-to-ehdaa2.owl b/src/ontology/bridge/cl-bridge-to-ehdaa2.owl index 7b45eb66d..7ef80ef77 100644 --- a/src/ontology/bridge/cl-bridge-to-ehdaa2.owl +++ b/src/ontology/bridge/cl-bridge-to-ehdaa2.owl @@ -9,7 +9,7 @@ xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#" xmlns:terms="http://purl.org/dc/terms/"> - + Jonathan Bard CL editors Equivalence axioms between EHDAA2 and CL. EHDAA2 replaces EHDAA. diff --git a/src/ontology/bridge/cl-bridge-to-emapa.owl b/src/ontology/bridge/cl-bridge-to-emapa.owl index 0bb3592df..7c2d50d95 100644 --- a/src/ontology/bridge/cl-bridge-to-emapa.owl +++ b/src/ontology/bridge/cl-bridge-to-emapa.owl @@ -9,7 +9,7 @@ xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#" xmlns:terms="http://purl.org/dc/terms/"> - + Anne Niknejad Aurelie Comte CL editors diff --git a/src/ontology/bridge/cl-bridge-to-fbbt.owl b/src/ontology/bridge/cl-bridge-to-fbbt.owl index 80dad8077..ecddb7b95 100644 --- a/src/ontology/bridge/cl-bridge-to-fbbt.owl +++ b/src/ontology/bridge/cl-bridge-to-fbbt.owl @@ -9,7 +9,7 @@ xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#" xmlns:terms="http://purl.org/dc/terms/"> - + David Osumi-Sutherland CL editors Taxonomic equivalence axioms between the Drosophila Anatomy Ontology and CL. diff --git a/src/ontology/bridge/cl-bridge-to-fma.owl b/src/ontology/bridge/cl-bridge-to-fma.owl index de73a5e0b..e8b20665b 100644 --- a/src/ontology/bridge/cl-bridge-to-fma.owl +++ b/src/ontology/bridge/cl-bridge-to-fma.owl @@ -9,7 +9,7 @@ xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#" xmlns:terms="http://purl.org/dc/terms/"> - + Onard Mejino Terry Hayamizu CL editors diff --git a/src/ontology/bridge/cl-bridge-to-go.owl b/src/ontology/bridge/cl-bridge-to-go.owl index b6dd5efde..5238e9417 100644 --- a/src/ontology/bridge/cl-bridge-to-go.owl +++ b/src/ontology/bridge/cl-bridge-to-go.owl @@ -8,7 +8,7 @@ xmlns:xsd="http://www.w3.org/2001/XMLSchema#" xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"> - + diff --git a/src/ontology/bridge/cl-bridge-to-kupo.owl b/src/ontology/bridge/cl-bridge-to-kupo.owl index 011916905..65596a98a 100644 --- a/src/ontology/bridge/cl-bridge-to-kupo.owl +++ b/src/ontology/bridge/cl-bridge-to-kupo.owl @@ -8,7 +8,7 @@ xmlns:xsd="http://www.w3.org/2001/XMLSchema#" xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"> - + diff --git a/src/ontology/bridge/cl-bridge-to-ma.owl b/src/ontology/bridge/cl-bridge-to-ma.owl index 62583abf1..cec7ed53a 100644 --- a/src/ontology/bridge/cl-bridge-to-ma.owl +++ b/src/ontology/bridge/cl-bridge-to-ma.owl @@ -9,7 +9,7 @@ xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#" xmlns:terms="http://purl.org/dc/terms/"> - + George Gkoutos CL editors Terry Hayamizu diff --git a/src/ontology/bridge/cl-bridge-to-ncit.owl b/src/ontology/bridge/cl-bridge-to-ncit.owl index 743c2223a..ed48b276b 100644 --- a/src/ontology/bridge/cl-bridge-to-ncit.owl +++ b/src/ontology/bridge/cl-bridge-to-ncit.owl @@ -8,7 +8,7 @@ xmlns:xsd="http://www.w3.org/2001/XMLSchema#" xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"> - + diff --git a/src/ontology/bridge/cl-bridge-to-sctid.owl b/src/ontology/bridge/cl-bridge-to-sctid.owl index 2558f4740..cf98fde51 100644 --- a/src/ontology/bridge/cl-bridge-to-sctid.owl +++ b/src/ontology/bridge/cl-bridge-to-sctid.owl @@ -9,7 +9,7 @@ xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#" xmlns:terms="http://purl.org/dc/terms/"> - + OBOL CL editors Rough subclass axioms between SNOMED-CT and CL. Note that SNOMED is not open, unlike other ontologies used in bridges here. Consequently, the mappings here are not verified to the same degree. diff --git a/src/ontology/bridge/cl-bridge-to-wbbt.owl b/src/ontology/bridge/cl-bridge-to-wbbt.owl index 76bd14117..03bec9597 100644 --- a/src/ontology/bridge/cl-bridge-to-wbbt.owl +++ b/src/ontology/bridge/cl-bridge-to-wbbt.owl @@ -8,7 +8,7 @@ xmlns:xsd="http://www.w3.org/2001/XMLSchema#" xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"> - + diff --git a/src/ontology/bridge/cl-bridge-to-xao.owl b/src/ontology/bridge/cl-bridge-to-xao.owl index 1c8b69171..b31d4a2db 100644 --- a/src/ontology/bridge/cl-bridge-to-xao.owl +++ b/src/ontology/bridge/cl-bridge-to-xao.owl @@ -9,7 +9,7 @@ xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#" xmlns:terms="http://purl.org/dc/terms/"> - + Erik Segerdell VG Ponferrada CL editors diff --git a/src/ontology/bridge/cl-bridge-to-zfa.owl b/src/ontology/bridge/cl-bridge-to-zfa.owl index a2212e037..6262ff1b0 100644 --- a/src/ontology/bridge/cl-bridge-to-zfa.owl +++ b/src/ontology/bridge/cl-bridge-to-zfa.owl @@ -9,7 +9,7 @@ xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#" xmlns:terms="http://purl.org/dc/terms/"> - + Melissa Haendel Veri Van Slyke Yvonne Bradford diff --git a/src/ontology/bridge/uberon-bridge-to-aeo.owl b/src/ontology/bridge/uberon-bridge-to-aeo.owl index 32886bc70..f4a914ed0 100644 --- a/src/ontology/bridge/uberon-bridge-to-aeo.owl +++ b/src/ontology/bridge/uberon-bridge-to-aeo.owl @@ -8,7 +8,7 @@ xmlns:xsd="http://www.w3.org/2001/XMLSchema#" xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"> - + diff --git a/src/ontology/bridge/uberon-bridge-to-bfo.owl b/src/ontology/bridge/uberon-bridge-to-bfo.owl index ab02af6d1..d511a5e6e 100644 --- a/src/ontology/bridge/uberon-bridge-to-bfo.owl +++ b/src/ontology/bridge/uberon-bridge-to-bfo.owl @@ -8,7 +8,7 @@ xmlns:xsd="http://www.w3.org/2001/XMLSchema#" xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"> - + diff --git a/src/ontology/bridge/uberon-bridge-to-caro.owl b/src/ontology/bridge/uberon-bridge-to-caro.owl index b16019522..8b4ab8d2a 100644 --- a/src/ontology/bridge/uberon-bridge-to-caro.owl +++ b/src/ontology/bridge/uberon-bridge-to-caro.owl @@ -8,7 +8,7 @@ xmlns:xsd="http://www.w3.org/2001/XMLSchema#" xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"> - + diff --git a/src/ontology/bridge/uberon-bridge-to-dhba.owl b/src/ontology/bridge/uberon-bridge-to-dhba.owl index ec3a6fb5d..3a97bca0a 100644 --- a/src/ontology/bridge/uberon-bridge-to-dhba.owl +++ b/src/ontology/bridge/uberon-bridge-to-dhba.owl @@ -8,7 +8,7 @@ xmlns:xsd="http://www.w3.org/2001/XMLSchema#" xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"> - + diff --git a/src/ontology/bridge/uberon-bridge-to-ehdaa2.owl b/src/ontology/bridge/uberon-bridge-to-ehdaa2.owl index 6b9dad429..f55bc387b 100644 --- a/src/ontology/bridge/uberon-bridge-to-ehdaa2.owl +++ b/src/ontology/bridge/uberon-bridge-to-ehdaa2.owl @@ -9,7 +9,7 @@ xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#" xmlns:terms="http://purl.org/dc/terms/"> - + Jonathan Bard Uberon editors Equivalence axioms between EHDAA2 and Uberon. EHDAA2 replaces EHDAA. diff --git a/src/ontology/bridge/uberon-bridge-to-emapa.owl b/src/ontology/bridge/uberon-bridge-to-emapa.owl index 91b8cd090..191941fb6 100644 --- a/src/ontology/bridge/uberon-bridge-to-emapa.owl +++ b/src/ontology/bridge/uberon-bridge-to-emapa.owl @@ -9,7 +9,7 @@ xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#" xmlns:terms="http://purl.org/dc/terms/"> - + Anne Niknejad Aurelie Comte Uberon editors diff --git a/src/ontology/bridge/uberon-bridge-to-fbbt.owl b/src/ontology/bridge/uberon-bridge-to-fbbt.owl index 21cb29708..2e89e82da 100644 --- a/src/ontology/bridge/uberon-bridge-to-fbbt.owl +++ b/src/ontology/bridge/uberon-bridge-to-fbbt.owl @@ -9,7 +9,7 @@ xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#" xmlns:terms="http://purl.org/dc/terms/"> - + David Osumi-Sutherland Uberon editors Taxonomic equivalence axioms between the Drosophila Anatomy Ontology and Uberon. diff --git a/src/ontology/bridge/uberon-bridge-to-fbdv.owl b/src/ontology/bridge/uberon-bridge-to-fbdv.owl index 9a3a98caa..743ff0003 100644 --- a/src/ontology/bridge/uberon-bridge-to-fbdv.owl +++ b/src/ontology/bridge/uberon-bridge-to-fbdv.owl @@ -8,7 +8,7 @@ xmlns:xsd="http://www.w3.org/2001/XMLSchema#" xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"> - + diff --git a/src/ontology/bridge/uberon-bridge-to-fma.owl b/src/ontology/bridge/uberon-bridge-to-fma.owl index 8cff0cf11..8f14071a6 100644 --- a/src/ontology/bridge/uberon-bridge-to-fma.owl +++ b/src/ontology/bridge/uberon-bridge-to-fma.owl @@ -9,7 +9,7 @@ xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#" xmlns:terms="http://purl.org/dc/terms/"> - + Onard Mejino Terry Hayamizu Uberon editors diff --git a/src/ontology/bridge/uberon-bridge-to-go.owl b/src/ontology/bridge/uberon-bridge-to-go.owl index e17aa457b..019669906 100644 --- a/src/ontology/bridge/uberon-bridge-to-go.owl +++ b/src/ontology/bridge/uberon-bridge-to-go.owl @@ -8,7 +8,7 @@ xmlns:xsd="http://www.w3.org/2001/XMLSchema#" xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"> - + diff --git a/src/ontology/bridge/uberon-bridge-to-hao.owl b/src/ontology/bridge/uberon-bridge-to-hao.owl index c98007861..406e37fe0 100644 --- a/src/ontology/bridge/uberon-bridge-to-hao.owl +++ b/src/ontology/bridge/uberon-bridge-to-hao.owl @@ -8,7 +8,7 @@ xmlns:xsd="http://www.w3.org/2001/XMLSchema#" xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"> - + diff --git a/src/ontology/bridge/uberon-bridge-to-hba.owl b/src/ontology/bridge/uberon-bridge-to-hba.owl index eda849561..8596f2295 100644 --- a/src/ontology/bridge/uberon-bridge-to-hba.owl +++ b/src/ontology/bridge/uberon-bridge-to-hba.owl @@ -8,7 +8,7 @@ xmlns:xsd="http://www.w3.org/2001/XMLSchema#" xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"> - + diff --git a/src/ontology/bridge/uberon-bridge-to-hsapdv.owl b/src/ontology/bridge/uberon-bridge-to-hsapdv.owl index d7af6df56..175028844 100644 --- a/src/ontology/bridge/uberon-bridge-to-hsapdv.owl +++ b/src/ontology/bridge/uberon-bridge-to-hsapdv.owl @@ -8,7 +8,7 @@ xmlns:xsd="http://www.w3.org/2001/XMLSchema#" xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"> - + diff --git a/src/ontology/bridge/uberon-bridge-to-kupo.owl b/src/ontology/bridge/uberon-bridge-to-kupo.owl index f724dceeb..0a39f66c9 100644 --- a/src/ontology/bridge/uberon-bridge-to-kupo.owl +++ b/src/ontology/bridge/uberon-bridge-to-kupo.owl @@ -8,7 +8,7 @@ xmlns:xsd="http://www.w3.org/2001/XMLSchema#" xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"> - + diff --git a/src/ontology/bridge/uberon-bridge-to-ma.owl b/src/ontology/bridge/uberon-bridge-to-ma.owl index b58d3a6d2..511baf1f0 100644 --- a/src/ontology/bridge/uberon-bridge-to-ma.owl +++ b/src/ontology/bridge/uberon-bridge-to-ma.owl @@ -9,7 +9,7 @@ xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#" xmlns:terms="http://purl.org/dc/terms/"> - + George Gkoutos Terry Hayamizu Uberon editors diff --git a/src/ontology/bridge/uberon-bridge-to-mmusdv.owl b/src/ontology/bridge/uberon-bridge-to-mmusdv.owl index 03e7a8730..a5238df9f 100644 --- a/src/ontology/bridge/uberon-bridge-to-mmusdv.owl +++ b/src/ontology/bridge/uberon-bridge-to-mmusdv.owl @@ -8,7 +8,7 @@ xmlns:xsd="http://www.w3.org/2001/XMLSchema#" xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"> - + diff --git a/src/ontology/bridge/uberon-bridge-to-ncit.owl b/src/ontology/bridge/uberon-bridge-to-ncit.owl index 4c4fbb299..a5fbb4951 100644 --- a/src/ontology/bridge/uberon-bridge-to-ncit.owl +++ b/src/ontology/bridge/uberon-bridge-to-ncit.owl @@ -8,7 +8,7 @@ xmlns:xsd="http://www.w3.org/2001/XMLSchema#" xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"> - + diff --git a/src/ontology/bridge/uberon-bridge-to-oges.owl b/src/ontology/bridge/uberon-bridge-to-oges.owl index 02afa9b93..726c3423c 100644 --- a/src/ontology/bridge/uberon-bridge-to-oges.owl +++ b/src/ontology/bridge/uberon-bridge-to-oges.owl @@ -8,7 +8,7 @@ xmlns:xsd="http://www.w3.org/2001/XMLSchema#" xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"> - + diff --git a/src/ontology/bridge/uberon-bridge-to-pba.owl b/src/ontology/bridge/uberon-bridge-to-pba.owl index 93197f2db..f69eb45b6 100644 --- a/src/ontology/bridge/uberon-bridge-to-pba.owl +++ b/src/ontology/bridge/uberon-bridge-to-pba.owl @@ -8,7 +8,7 @@ xmlns:xsd="http://www.w3.org/2001/XMLSchema#" xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"> - + diff --git a/src/ontology/bridge/uberon-bridge-to-sctid.owl b/src/ontology/bridge/uberon-bridge-to-sctid.owl index ccde2e0ba..5298fd17a 100644 --- a/src/ontology/bridge/uberon-bridge-to-sctid.owl +++ b/src/ontology/bridge/uberon-bridge-to-sctid.owl @@ -9,7 +9,7 @@ xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#" xmlns:terms="http://purl.org/dc/terms/"> - + OBOL Uberon editors Rough subclass axioms between SNOMED-CT and Uberon. Note that SNOMED is not open, unlike other ontologies used in bridges here. Consequently, the mappings here are not verified to the same degree. diff --git a/src/ontology/bridge/uberon-bridge-to-spd.owl b/src/ontology/bridge/uberon-bridge-to-spd.owl index 96826a60b..0300d89de 100644 --- a/src/ontology/bridge/uberon-bridge-to-spd.owl +++ b/src/ontology/bridge/uberon-bridge-to-spd.owl @@ -8,7 +8,7 @@ xmlns:xsd="http://www.w3.org/2001/XMLSchema#" xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"> - + diff --git a/src/ontology/bridge/uberon-bridge-to-tads.owl b/src/ontology/bridge/uberon-bridge-to-tads.owl index 8fe929e6f..4ed612c67 100644 --- a/src/ontology/bridge/uberon-bridge-to-tads.owl +++ b/src/ontology/bridge/uberon-bridge-to-tads.owl @@ -8,7 +8,7 @@ xmlns:xsd="http://www.w3.org/2001/XMLSchema#" xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"> - + diff --git a/src/ontology/bridge/uberon-bridge-to-tgma.owl b/src/ontology/bridge/uberon-bridge-to-tgma.owl index 900e2d572..63340eb98 100644 --- a/src/ontology/bridge/uberon-bridge-to-tgma.owl +++ b/src/ontology/bridge/uberon-bridge-to-tgma.owl @@ -8,7 +8,7 @@ xmlns:xsd="http://www.w3.org/2001/XMLSchema#" xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"> - + diff --git a/src/ontology/bridge/uberon-bridge-to-wbbt.owl b/src/ontology/bridge/uberon-bridge-to-wbbt.owl index 34e001cf4..122198347 100644 --- a/src/ontology/bridge/uberon-bridge-to-wbbt.owl +++ b/src/ontology/bridge/uberon-bridge-to-wbbt.owl @@ -8,7 +8,7 @@ xmlns:xsd="http://www.w3.org/2001/XMLSchema#" xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"> - + diff --git a/src/ontology/bridge/uberon-bridge-to-wbls.owl b/src/ontology/bridge/uberon-bridge-to-wbls.owl index 8c7255c3f..91b75c9dc 100644 --- a/src/ontology/bridge/uberon-bridge-to-wbls.owl +++ b/src/ontology/bridge/uberon-bridge-to-wbls.owl @@ -8,7 +8,7 @@ xmlns:xsd="http://www.w3.org/2001/XMLSchema#" xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"> - + diff --git a/src/ontology/bridge/uberon-bridge-to-xao.owl b/src/ontology/bridge/uberon-bridge-to-xao.owl index 275f3c39f..04196f2f7 100644 --- a/src/ontology/bridge/uberon-bridge-to-xao.owl +++ b/src/ontology/bridge/uberon-bridge-to-xao.owl @@ -9,7 +9,7 @@ xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#" xmlns:terms="http://purl.org/dc/terms/"> - + Erik Segerdell VG Ponferrada Uberon editors diff --git a/src/ontology/bridge/uberon-bridge-to-zfa.owl b/src/ontology/bridge/uberon-bridge-to-zfa.owl index f1e6f2927..b0182da05 100644 --- a/src/ontology/bridge/uberon-bridge-to-zfa.owl +++ b/src/ontology/bridge/uberon-bridge-to-zfa.owl @@ -9,7 +9,7 @@ xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#" xmlns:terms="http://purl.org/dc/terms/"> - + Melissa Haendel Veri Van Slyke Yvonne Bradford diff --git a/src/ontology/bridge/uberon-bridge-to-zfs.owl b/src/ontology/bridge/uberon-bridge-to-zfs.owl index 3da18df5b..5c573d423 100644 --- a/src/ontology/bridge/uberon-bridge-to-zfs.owl +++ b/src/ontology/bridge/uberon-bridge-to-zfs.owl @@ -8,7 +8,7 @@ xmlns:xsd="http://www.w3.org/2001/XMLSchema#" xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"> - + diff --git a/src/ontology/imports/merged_import.owl b/src/ontology/imports/merged_import.owl index be1344e81..851d0e728 100644 --- a/src/ontology/imports/merged_import.owl +++ b/src/ontology/imports/merged_import.owl @@ -7,8 +7,8 @@ Prefix(rdfs:=) Ontology( - -Annotation(owl:versionInfo "2024-10-31") + +Annotation(owl:versionInfo "2024-11-02") Declaration(Class()) Declaration(Class()) @@ -10723,6 +10723,7 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -152492,11 +152493,11 @@ AnnotationAssertion(Annotation( "IEDB:BP") "native protein") AnnotationAssertion( "protein") AnnotationAssertion( "PR:000000001") -AnnotationAssertion(rdfs:comment "The definition above excludes protein complexes, which some also consider a protein. Those who wish to refer to a class representing both senses of the word are directed to CHEBI:36080. Note that the definition allows for experimentally-manipulated genes, and allows for artifically-produced derivatives that mimic those found naturally. Proteins (in the sense defined here) that descended from a common ancestor can be classified into families and superfamilies composed of products of evolutionarily-related genes. The domain architecture of a protein is described by the order of its constituent domains. Proteins with the same domains in the same order are defined as homeomorphic [PRO:WCB].") +AnnotationAssertion(rdfs:comment "The definition above excludes protein complexes, which some also consider a protein. Those who wish to refer to a class representing both senses of the word are directed to CHEBI:36080. Note that the definition allows for experimentally-manipulated genes, and allows for artifically-produced derivatives that mimic those found naturally. Proteins (in the sense defined here) that descended from a common ancestor can be classified into families and superfamilies composed of products of evolutionarily-related genes. The domain architecture of a protein is described by the order of its constituent domains. Proteins with the same domains in the same order are defined as homeomorphic [PRO:WCB).") AnnotationAssertion(rdfs:label "protein") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf( ) -SubClassOf( ) +SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -153129,7 +153130,6 @@ SubClassOf( (prominin) AnnotationAssertion(Annotation( "InterPro:IPR008795") Annotation( "PMID:11467842") "A protein with core architecture consisting of one Prominin (Pfam:PF05478) domain. The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and human prominin and prominin-like 1 are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain.") -AnnotationAssertion( "PANTHER:PTHR22730") AnnotationAssertion( "PIRSF:PIRSF017831") AnnotationAssertion( "protein") AnnotationAssertion( "PR:000001785") @@ -154558,20 +154558,20 @@ AnnotationAssertion(rdfs:comment " AnnotationAssertion(rdfs:label "receptor-type tyrosine-protein phosphatase C isoform CD45R") SubClassOf( ) -# Class: (protein-containing material entity) - -AnnotationAssertion(Annotation( "PRO:DAN") "A material entity that minimally consists of a protein.") -AnnotationAssertion(Annotation( "PRO:DAN") "protein") -AnnotationAssertion(Annotation( "PRO:DAN") "protein aggregate") -AnnotationAssertion(Annotation( "PRO:DAN") "protein complex") -AnnotationAssertion(Annotation( "PRO:DAN") "protein-containing complex") -AnnotationAssertion( "protein") -AnnotationAssertion( "PR:000050567") -AnnotationAssertion(rdfs:comment "Note: This includes single proteins and derivatives thereof (PR:000000001), protein-containing complexes (GO:0032991), and protein aggregates (PR:000050566).") -AnnotationAssertion(rdfs:label "protein-containing material entity") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf( ) -SubClassOf( ObjectSomeValuesFrom( )) +# Class: (protein-containing molecular entity) + +AnnotationAssertion(Annotation( "PRO:DAN") "A molecular entity that minimally consists of a protein.") +AnnotationAssertion(Annotation( "PRO:DAN") "protein") +AnnotationAssertion(Annotation( "PRO:DAN") "protein aggregate") +AnnotationAssertion(Annotation( "PRO:DAN") "protein complex") +AnnotationAssertion(Annotation( "PRO:DAN") "protein-containing complex") +AnnotationAssertion( "protein") +AnnotationAssertion( "PR:000064867") +AnnotationAssertion(rdfs:comment "Note: This includes single proteins and derivatives thereof (PR:000000001), protein-containing complexes (GO:0032991), and protein aggregates (PR:000050565).") +AnnotationAssertion(rdfs:label "protein-containing molecular entity") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (interleukin-7 receptor alpha chain (chicken)) @@ -154640,6 +154640,7 @@ AnnotationAssertion(Annotation( "UniProtKB:E1C9E2") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-PROM1") AnnotationAssertion( "protein") +AnnotationAssertion(Annotation( "PRO:DAN") Annotation( ) "PROM1") AnnotationAssertion( "PR:E1C9E2") AnnotationAssertion(rdfs:comment "Category=organism-gene.") AnnotationAssertion(rdfs:label "uncharacterized protein, PROM1 translation product (chicken)") @@ -155919,7 +155920,7 @@ SubClassOf( ObjectSomeValuesFrom( (prolactin (chicken)) -AnnotationAssertion(Annotation( "OMA:P14676") Annotation( "PANTHER:PTHR11417:SF4") Annotation( "PRO:DNx") "A prolactin that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:P14676") Annotation( "PRO:DNx") "A prolactin that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:P14676") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-PRL") AnnotationAssertion( "protein") @@ -156025,7 +156026,7 @@ SubClassOf( ObjectSomeValuesFrom( (myelin basic protein (chicken)) -AnnotationAssertion(Annotation( "PANTHER:PTHR11429:SF0") Annotation( "PRO:DNx") "A myelin basic protein that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "PRO:DNx") "A myelin basic protein that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:P15720") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-MBP") AnnotationAssertion( "protein") @@ -156642,7 +156643,7 @@ SubClassOf( ObjectSomeValuesFrom( (GATA-binding factor 2 (chicken)) -AnnotationAssertion(Annotation( "OMA:P23824") Annotation( "PANTHER:PTHR10071:SF107") Annotation( "PRO:DNx") "An endothelial transcription factor GATA-2 that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:P23824") Annotation( "PRO:DNx") "An endothelial transcription factor GATA-2 that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:P23824") AnnotationAssertion(Annotation( "UniProtKB:P23824") "GATA-2 (chicken)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-GATA2") @@ -156864,7 +156865,7 @@ AnnotationAssertion(Annotation( "ADP-ribosyl cyclase 1 (human)") AnnotationAssertion(Annotation( "UniProtKB:P28907") "ADPRC 1 (human)") AnnotationAssertion(Annotation( "UniProtKB:P28907") "T10 (human)") -AnnotationAssertion(Annotation( "UniProtKB:P28907") "cADPr hydrolase 1 (human)") +AnnotationAssertion(Annotation( "UniProtKB:P28907") "cADPR hydrolase 1 (human)") AnnotationAssertion(Annotation( "UniProtKB:P28907") "cyclic ADP-ribose hydrolase 1 (human)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "hCD38") AnnotationAssertion( "protein") @@ -157334,7 +157335,7 @@ AnnotationAssertion(Annotation( "UniProtKB:P56528") "CD38 (mouse)") AnnotationAssertion(Annotation( "UniProtKB:P56528") "I-19 (mouse)") AnnotationAssertion(Annotation( "UniProtKB:P56528") "NIM-R5 antigen (mouse)") -AnnotationAssertion(Annotation( "UniProtKB:P56528") "cADPr hydrolase 1 (mouse)") +AnnotationAssertion(Annotation( "UniProtKB:P56528") "cADPR hydrolase 1 (mouse)") AnnotationAssertion(Annotation( "UniProtKB:P56528") "cyclic ADP-ribose hydrolase 1 (mouse)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "mCD38") AnnotationAssertion( "protein") @@ -157573,7 +157574,7 @@ SubClassOf( ObjectSomeValuesFrom( (mast/stem cell growth factor receptor Kit (chicken)) -AnnotationAssertion(Annotation( "OMA:Q08156") Annotation( "PANTHER:PTHR24416:SF238") Annotation( "PRO:DNx") "A mast/stem cell growth factor receptor that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:Q08156") Annotation( "PRO:DNx") "A mast/stem cell growth factor receptor that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:Q08156") AnnotationAssertion(Annotation( "UniProtKB:Q08156") "SCFR (chicken)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-KIT") @@ -157822,7 +157823,7 @@ SubClassOf( ObjectSomeValuesFrom( (cadherin-5 (chicken)) -AnnotationAssertion(Annotation( "OMA:Q8AYD0") Annotation( "PANTHER:PTHR24027:SF44") Annotation( "PRO:DNx") "A cadherin-5 that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:Q8AYD0") Annotation( "PRO:DNx") "A cadherin-5 that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:Q8AYD0") AnnotationAssertion(Annotation( "UniProtKB:Q8AYD0") "VE-cadherin (chicken)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-CDH5") @@ -157888,7 +157889,7 @@ SubClassOf( ObjectSomeValuesFrom( (fibroblast growth factor 8 (chicken)) -AnnotationAssertion(Annotation( "OMA:Q90722") Annotation( "PANTHER:PTHR11486:SF2") Annotation( "PRO:DNx") "A fibroblast growth factor 8 that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:Q90722") Annotation( "PRO:DNx") "A fibroblast growth factor 8 that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:Q90722") AnnotationAssertion(Annotation( "UniProtKB:Q90722") "FGF-8 (chicken)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-FGF8") @@ -157906,7 +157907,7 @@ SubClassOf( ObjectSomeValuesFrom( (transferrin receptor protein 1 (chicken)) -AnnotationAssertion(Annotation( "PANTHER:PTHR10404:SF26") Annotation( "PRO:DNx") "A transferrin receptor protein 1 that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "PRO:WCB") "A transferrin receptor protein 1 that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:Q90997") AnnotationAssertion(Annotation( "UniProtKB:Q90997") "TR (chicken)") AnnotationAssertion(Annotation( "UniProtKB:Q90997") "TfR (chicken)") @@ -157925,7 +157926,7 @@ SubClassOf( ObjectSomeValuesFrom( (sonic hedgehog protein (chicken)) -AnnotationAssertion(Annotation( "PANTHER:PTHR11889:SF16") Annotation( "PRO:DNx") "A sonic hedgehog protein that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:Q91035") Annotation( "PRO:DNx") "A sonic hedgehog protein that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:Q91035") AnnotationAssertion(Annotation( "UniProtKB:Q91035") "Shh unprocessed N-terminal signaling and C-terminal autoprocessing domains (chicken)") AnnotationAssertion(Annotation( "UniProtKB:Q91035") "ShhNC (chicken)") @@ -158124,7 +158125,7 @@ SubClassOf( ObjectSomeValuesFrom( (spondin-1 (chicken)) -AnnotationAssertion(Annotation( "PANTHER:PTHR11311:SF2") Annotation( "PRO:DNx") "A spondin-1 that is encoded in the genome of chicken.") +AnnotationAssertion(Annotation( "OMA:Q9W770") Annotation( "PRO:DNx") "A spondin-1 that is encoded in the genome of chicken.") AnnotationAssertion( "UniProtKB:Q9W770") AnnotationAssertion(Annotation( "UniProtKB:Q9W770") "F-spondin (chicken)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "chick-SPON1")