Merge branch 'master' into 3016-dont-add-obo-shorthands-to-ro-mirror

src/ontology/uberon-edit.obo

@@ -91082,17 +91082,15 @@ property_value: taxon_notes "Piriform cortical regions are present in the brains
 [Term]
 id: UBERON:0004726
 name: vasa recta
-def: "In the blood supply of the kidney, the vasa recta renis (or straight arteries of kidney, or straight arterioles of kidney) form a series of straight capillaries in the medulla. They lie parallel to the loop of Henle. These vessels branch off the efferent arterioles of juxtamedullary nephrons (those nephrons closest to the medulla), enter the medulla, and surround the loop of Henle." [Wikipedia:Vasa_recta]
+def: "A group of microvessels that are part of the kidney. A vasa recta has a hairpin-like shape, entering the renal medulla as the straight arterioles and surrounds the loop of Henle, forming a capillary network. Finally it leaves the renal medulla to ascend to the cortex as the straight venules. The primary function of the vasa recta is to facilitate countercurrent exchange, which is essential for the kidney's ability to concentrate urine" [PMID:23126245, Wikipedia:Vasa_recta]
 subset: pheno_slim
-synonym: "arteria recta" RELATED [Wikipedia:Vasa_recta]
-synonym: "arteriae rectae" RELATED [Wikipedia:Vasa_recta]
-synonym: "arteriolae rectae renis" EXACT OMO:0003011 [FMA:72006, FMA:TA]
+synonym: "arteriolae rectae renis" NARROW OMO:0003011 [FMA:72006, FMA:TA]
 synonym: "arteriolae rectae renis" RELATED OMO:0003011 [Wikipedia:Vasa_recta]
 synonym: "arteriolae recti" RELATED [Wikipedia:Vasa_recta]
 synonym: "kidney vasa recta" EXACT [MP:0011324]
-synonym: "renal medullary capillary" EXACT [EMAPA:30043]
-synonym: "set of straight arterioles of kidney" EXACT [FMA:72006]
-synonym: "straight arterioles of kidney" EXACT [FMA:72006]
+synonym: "renal medullary capillary" NARROW [EMAPA:30043]
+synonym: "set of straight arterioles of kidney" NARROW [FMA:72006]
+synonym: "straight arterioles of kidney" NARROW [FMA:72006]
 synonym: "vasa recta of kidney" EXACT [FMA:72006]
 synonym: "vasa recta renis" EXACT OMO:0003011 [FMA:72006, FMA:TA]
 synonym: "vasa rectae" RELATED [Wikipedia:Vasa_recta]
@@ -91101,9 +91099,8 @@ xref: FMA:72006
 xref: galen:ArteriaeRectae
 xref: MA:0002595
 xref: Wikipedia:Vasa_recta
-is_a: UBERON:0001140 ! renal vein
+is_a: UBERON:0006544 ! kidney vasculature
 property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/2/21/Kidney_nephron.png" xsd:anyURI
-property_value: editor_note "TODO - is this a vein or set of veins? in MA it is a venous blood vessel" xsd:string
 
 [Term]
 id: UBERON:0004727
@@ -130066,39 +130063,39 @@ relationship: part_of UBERON:0009074 ! syrinx organ
 
 [Term]
 id: UBERON:0009089
-name: inner medulla vasa recta descending limb
+name: inner medulla descending vasa recta
 xref: KUPO:0001003
 is_a: UBERON:0000064 ! organ part
 relationship: part_of UBERON:0004776 {source="KUPO"} ! inner renal medulla vasa recta
 property_value: external_ontology_notes "This class was created in order to align KUPO with CL. The original class was undefined, and the intended meaning is not clear, may be obsoleted in future. The vasa recta is parallel to the loop of Henles, this may refer to the portion of the vasa recta in the inner medullar parallel to the descending limb" xsd:string {external_ontology="CL"}
 
 [Term]
 id: UBERON:0009090
-name: outer medulla vasa recta descending limb
+name: outer medulla descending vasa recta
 xref: KUPO:0001004
 is_a: UBERON:0000064 ! organ part
 relationship: part_of UBERON:0004775 {source="KUPO"} ! outer renal medulla vasa recta
 property_value: external_ontology_notes "This class was created in order to align KUPO with CL. The original class was undefined, and the intended meaning is not clear, may be obsoleted in future. The vasa recta is parallel to the loop of Henles, this may refer to the portion of the vasa recta in the outer medullar parallel to the descending limb" xsd:string {external_ontology="CL"}
 
 [Term]
 id: UBERON:0009091
-name: vasa recta ascending limb
+name: ascending vasa recta
 xref: KUPO:0001005
 is_a: UBERON:0000064 ! organ part
 relationship: part_of UBERON:0004726 {source="KUPO"} ! vasa recta
 property_value: external_ontology_notes "This class was created in order to align KUPO with CL. The original class was undefined, and the intended meaning is not clear, may be obsoleted in future. The vasa recta is parallel to the loop of Henles, this may refer to the portion of the vasa recta parallel to the ascending limb" xsd:string {external_ontology="CL"}
 
 [Term]
 id: UBERON:0009092
-name: inner medulla vasa recta ascending limb
+name: inner medulla ascending vasa recta
 xref: KUPO:0001006
 is_a: UBERON:0000064 ! organ part
 relationship: part_of UBERON:0004776 {source="KUPO"} ! inner renal medulla vasa recta
 property_value: external_ontology_notes "This class was created in order to align KUPO with CL. The original class was undefined, and the intended meaning is not clear, may be obsoleted in future. The vasa recta is parallel to the loop of Henles, this may refer to the portion of the vasa recta in the inner medulla parallel to the ascending limb" xsd:string {external_ontology="CL"}
 
 [Term]
 id: UBERON:0009093
-name: outer medulla vasa recta ascending limb
+name: outer medulla ascending vasa recta
 xref: KUPO:0001007
 is_a: UBERON:0000064 ! organ part
 relationship: part_of UBERON:0004775 {source="KUPO"} ! outer renal medulla vasa recta
@@ -130697,7 +130694,7 @@ relationship: part_of UBERON:0002113 ! kidney
 
 [Term]
 id: UBERON:0009202
-name: vasa recta descending limb
+name: descending vasa recta
 xref: KUPO:0001002
 is_a: UBERON:0000064 ! organ part
 relationship: part_of UBERON:0004726 {source="KUPO"} ! vasa recta