Inventory of current bridges between Uberon/CL and foreign resources #327
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name: Create new pull request | |
on: | |
workflow_dispatch: | |
issues: | |
types: [ opened, edited ] | |
jobs: | |
build: | |
runs-on: ${{ matrix.os }} | |
strategy: | |
matrix: | |
python-version: ["3.9"] | |
os: [ ubuntu-latest ] | |
steps: | |
- uses: actions/checkout@v3 | |
- name: Set up Python ${{ matrix.python-version }} | |
uses: actions/setup-python@v3 | |
with: | |
python-version: ${{ matrix.python-version }} | |
- name: Return issue number | |
id: gh-script-issue | |
uses: actions/github-script@v6 | |
with: | |
# github-token: ${{ secrets.GH_TOKEN }} | |
script: | | |
const issue_number = context.issue.number | |
const repo = context.repo.owner+"/"+context.repo.repo | |
return issue_number | |
- name: Return repository name | |
id: gh-script-repo | |
uses: actions/github-script@v6 | |
with: | |
# github-token: ${{ secrets.GH_TOKEN }} | |
script: | | |
const repo = context.repo.owner+"/"+context.repo.repo | |
return repo | |
- name: Set branch name | |
id: vars | |
run: | | |
echo "branch-name=ochange_automation_"${{ steps.gh-script-issue.outputs.result }} >> $GITHUB_ENV | |
echo "resource=src/ontology/uberon-edit.obo" >> $GITHUB_ENV | |
- name: Install dependencies | |
run: | | |
pip install ontobot-change-agent | |
- name: Run ochange | |
id: ochange | |
run: | | |
ochange process-issue ${{ env.resource }} \ | |
-r ${{ steps.gh-script-repo.outputs.result }} \ | |
-n ${{ steps.gh-script-issue.outputs.result }} \ | |
-g ${{ secrets.GH_TOKEN }} \ | |
-p UBERON | |
- name: Create Pull Request | |
uses: peter-evans/create-pull-request@v4 | |
if: ${{ env.PR_TITLE}} | |
with: | |
branch-suffix: short-commit-hash | |
labels: Automated | |
body: ${{ env.PR_BODY }} | |
title: ${{ env.PR_TITLE }} | |
author: ${{ env.ISSUE_CREATOR }} <${{ env.ISSUE_CREATOR }}@users.noreply.github.com> | |
committer: ${{ env.ISSUE_CREATOR }} <${{ env.ISSUE_CREATOR }}@users.noreply.github.com> | |
base: ${{ github.head_ref }} | |
branch: ${{ env.branch-name }} | |
# token: ${{ secrets.GH_TOKEN }} |