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Inventory of current bridges between Uberon/CL and foreign resources #327

Inventory of current bridges between Uberon/CL and foreign resources

Inventory of current bridges between Uberon/CL and foreign resources #327

name: Create new pull request
on:
workflow_dispatch:
issues:
types: [ opened, edited ]
jobs:
build:
runs-on: ${{ matrix.os }}
strategy:
matrix:
python-version: ["3.9"]
os: [ ubuntu-latest ]
steps:
- uses: actions/checkout@v3
- name: Set up Python ${{ matrix.python-version }}
uses: actions/setup-python@v3
with:
python-version: ${{ matrix.python-version }}
- name: Return issue number
id: gh-script-issue
uses: actions/github-script@v6
with:
# github-token: ${{ secrets.GH_TOKEN }}
script: |
const issue_number = context.issue.number
const repo = context.repo.owner+"/"+context.repo.repo
return issue_number
- name: Return repository name
id: gh-script-repo
uses: actions/github-script@v6
with:
# github-token: ${{ secrets.GH_TOKEN }}
script: |
const repo = context.repo.owner+"/"+context.repo.repo
return repo
- name: Set branch name
id: vars
run: |
echo "branch-name=ochange_automation_"${{ steps.gh-script-issue.outputs.result }} >> $GITHUB_ENV
echo "resource=src/ontology/uberon-edit.obo" >> $GITHUB_ENV
- name: Install dependencies
run: |
pip install ontobot-change-agent
- name: Run ochange
id: ochange
run: |
ochange process-issue ${{ env.resource }} \
-r ${{ steps.gh-script-repo.outputs.result }} \
-n ${{ steps.gh-script-issue.outputs.result }} \
-g ${{ secrets.GH_TOKEN }} \
-p UBERON
- name: Create Pull Request
uses: peter-evans/create-pull-request@v4
if: ${{ env.PR_TITLE}}
with:
branch-suffix: short-commit-hash
labels: Automated
body: ${{ env.PR_BODY }}
title: ${{ env.PR_TITLE }}
author: ${{ env.ISSUE_CREATOR }} <${{ env.ISSUE_CREATOR }}@users.noreply.github.com>
committer: ${{ env.ISSUE_CREATOR }} <${{ env.ISSUE_CREATOR }}@users.noreply.github.com>
base: ${{ github.head_ref }}
branch: ${{ env.branch-name }}
# token: ${{ secrets.GH_TOKEN }}