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While running bam2pat on ML and MM tag containing bam file ,reads information is printed on the terminal. #53

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vinodsinghjnu opened this issue Oct 2, 2023 · 1 comment
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While running bam2pat on ML and MM tag containing bam file ,reads information is printed on the terminal. #53

vinodsinghjnu opened this issue Oct 2, 2023 · 1 comment

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@vinodsinghjnu
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@ Hi, I am getting read information printed on the terminal while running the bam2pat command, is there any way to stop this printing? Or this is due to the presence of ''Unknown CIGAR character: = ' in the BAM file which is not recognised by WGBStools.
Screenshot 2023-10-02 at 17 09 26
@nloyfer
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nloyfer commented Dec 24, 2023

Same problem as in #52

@nloyfer nloyfer closed this as completed Dec 24, 2023
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@nloyfer @vinodsinghjnu