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New bootstrap fixes #1329

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merged 53 commits into from
Oct 25, 2023
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sciyoshi
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@sciyoshi sciyoshi commented Oct 2, 2023

Picking up where #1290 left off to fix issues with latest nixpkgs unstable. I'm not sure what's left for this to be merged? @K900

Fixes #1291

known-build-systems.json Outdated Show resolved Hide resolved
@K900
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K900 commented Oct 2, 2023

What happened to overrides.json here? Enough of it is gone that Github just gives up on rendering the diff. Also, tests are still failing.

@sciyoshi sciyoshi force-pushed the new-bootstrap-fixes branch from 905367d to bff8658 Compare October 2, 2023 15:35
@sciyoshi
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sciyoshi commented Oct 2, 2023

What happened to overrides.json here? Enough of it is gone that Github just gives up on rendering the diff. Also, tests are still failing.

flitBuildHook was removed: https://github.com/NixOS/nixpkgs/blob/e4c7764b38930c8b99f4cea17eb367ed064abb9f/nixos/doc/manual/release-notes/rl-2311.section.md?plain=1#L406 so I replaced it with flit-core.

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K900 commented Oct 2, 2023

Now there's a lot of places that have flit-core in the overrides twice. Also, I'm pretty sure most of those overrides are generated from nixpkgs, and should be updated using the script, not manually. Also, a lot of places now have both setuptools and flit-core (and sometimes more build systems) in the same derivation - this will not break things necessarily, but is something to look at. Also, tests still fail.

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takeda commented Oct 6, 2023

It looks like it works, but for some reason I'm still get segmentation fault when I set preferWheels to true

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takeda commented Oct 10, 2023

Besides the preferWheels this is another issue. When using a minimized version of python it is also rebuilding bootstrapped tools which causes two issues:

  • those packages are no longer downloaded from cache, but rebuilt
  • their unit tests have extra dependencies which require enabling additional modules that application doesn't use (for example openssl, dbm, sqlite3 etc.

I suppose this is caused by removal of bootstrapped-pip and wheel overrides. Does the fix require this override? If the new behavior is intentional, is there a way for me to somehow fix the 2nd issue?

Here's way to reproduce the issue:

flake.nix (the inputs that work are commented)
{
  description = "Application packaged using poetry2nix";

  inputs.flake-utils.url = "github:numtide/flake-utils";
  #inputs.nixpkgs.url = "github:NixOS/nixpkgs/babf56d5b24a91526a208cad1dde3d6ddbe4878c";
  #inputs.poetry2nix.url = "github:nix-community/poetry2nix";
  inputs.nixpkgs.url = "github:NixOS/nixpkgs/nixos-unstable";
  inputs.poetry2nix.url = "github:sciyoshi/poetry2nix/129c7f3c1e01fc925f22a5e5f74c8cc99d774fe4";
  inputs.poetry2nix.inputs.nixpkgs.follows = "nixpkgs";

  outputs = { self, nixpkgs, flake-utils, poetry2nix }:
    flake-utils.lib.eachDefaultSystem (system:
      let
        # see https://github.com/nix-community/poetry2nix/tree/master#api for more functions and examples.
        inherit (poetry2nix.legacyPackages.${system}) mkPoetryApplication;
        pkgs = nixpkgs.legacyPackages.${system};
        python = pkgs.python310.override {
          self = python;
          mimetypesSupport = false;
          x11Support = false;
          stripConfig = true;
          stripIdlelib = true;
          stripTests = true;
          stripTkinter = true;
          enableLTO = false;
          rebuildBytecode = false;
          stripBytecode = true;
          includeSiteCustomize = false;
          enableOptimizations = false;
          bzip2 = null;
          #configd = null;
          #expat = null;
          libffi = pkgs.libffiBoot;
          gdbm = null;
          xz = null;
          ncurses = null;
          openssl = null;
          openssl_legacy = null;
          readline = null;
          sqlite = null;
          #zlib = null;
          tzdata = null;
        };
      in
      {
        packages = {
          myapp = mkPoetryApplication {
            inherit python;
            projectDir = self;
          };
          default = self.packages.${system}.myapp;
        };

        devShells.default = pkgs.mkShell {
          packages = [ poetry2nix.packages.${system}.poetry ];
        };
      });
}
flake.lock
{
  "nodes": {
    "flake-utils": {
      "inputs": {
        "systems": "systems"
      },
      "locked": {
        "lastModified": 1694529238,
        "narHash": "sha256-zsNZZGTGnMOf9YpHKJqMSsa0dXbfmxeoJ7xHlrt+xmY=",
        "owner": "numtide",
        "repo": "flake-utils",
        "rev": "ff7b65b44d01cf9ba6a71320833626af21126384",
        "type": "github"
      },
      "original": {
        "owner": "numtide",
        "repo": "flake-utils",
        "type": "github"
      }
    },
    "flake-utils_2": {
      "inputs": {
        "systems": "systems_2"
      },
      "locked": {
        "lastModified": 1694529238,
        "narHash": "sha256-zsNZZGTGnMOf9YpHKJqMSsa0dXbfmxeoJ7xHlrt+xmY=",
        "owner": "numtide",
        "repo": "flake-utils",
        "rev": "ff7b65b44d01cf9ba6a71320833626af21126384",
        "type": "github"
      },
      "original": {
        "owner": "numtide",
        "repo": "flake-utils",
        "type": "github"
      }
    },
    "nix-github-actions": {
      "inputs": {
        "nixpkgs": [
          "poetry2nix",
          "nixpkgs"
        ]
      },
      "locked": {
        "lastModified": 1693660503,
        "narHash": "sha256-B/g2V4v6gjirFmy+I5mwB2bCYc0l3j5scVfwgl6WOl8=",
        "owner": "nix-community",
        "repo": "nix-github-actions",
        "rev": "bd5bdbb52350e145c526108f4ef192eb8e554fa0",
        "type": "github"
      },
      "original": {
        "owner": "nix-community",
        "repo": "nix-github-actions",
        "type": "github"
      }
    },
    "nixpkgs": {
      "locked": {
        "lastModified": 1696604326,
        "narHash": "sha256-YXUNI0kLEcI5g8lqGMb0nh67fY9f2YoJsILafh6zlMo=",
        "owner": "NixOS",
        "repo": "nixpkgs",
        "rev": "87828a0e03d1418e848d3dd3f3014a632e4a4f64",
        "type": "github"
      },
      "original": {
        "owner": "NixOS",
        "ref": "nixos-unstable",
        "repo": "nixpkgs",
        "type": "github"
      }
    },
    "poetry2nix": {
      "inputs": {
        "flake-utils": "flake-utils_2",
        "nix-github-actions": "nix-github-actions",
        "nixpkgs": [
          "nixpkgs"
        ]
      },
      "locked": {
        "lastModified": 1696349210,
        "narHash": "sha256-nXjXyiJccEUKnHL4AlmtHA4GkHzvpMQQQ36OHwVMmt0=",
        "owner": "sciyoshi",
        "repo": "poetry2nix",
        "rev": "129c7f3c1e01fc925f22a5e5f74c8cc99d774fe4",
        "type": "github"
      },
      "original": {
        "owner": "sciyoshi",
        "repo": "poetry2nix",
        "rev": "129c7f3c1e01fc925f22a5e5f74c8cc99d774fe4",
        "type": "github"
      }
    },
    "root": {
      "inputs": {
        "flake-utils": "flake-utils",
        "nixpkgs": "nixpkgs",
        "poetry2nix": "poetry2nix"
      }
    },
    "systems": {
      "locked": {
        "lastModified": 1681028828,
        "narHash": "sha256-Vy1rq5AaRuLzOxct8nz4T6wlgyUR7zLU309k9mBC768=",
        "owner": "nix-systems",
        "repo": "default",
        "rev": "da67096a3b9bf56a91d16901293e51ba5b49a27e",
        "type": "github"
      },
      "original": {
        "owner": "nix-systems",
        "repo": "default",
        "type": "github"
      }
    },
    "systems_2": {
      "locked": {
        "lastModified": 1681028828,
        "narHash": "sha256-Vy1rq5AaRuLzOxct8nz4T6wlgyUR7zLU309k9mBC768=",
        "owner": "nix-systems",
        "repo": "default",
        "rev": "da67096a3b9bf56a91d16901293e51ba5b49a27e",
        "type": "github"
      },
      "original": {
        "owner": "nix-systems",
        "repo": "default",
        "type": "github"
      }
    }
  },
  "root": "root",
  "version": 7
}
pyproject.toml
[tool.poetry]
name = "minimized"
version = "0.1.0"
description = ""
authors = ["Your Name <[email protected]>"]
packages = [
  { include = "minimized.py" }
]

[tool.poetry.dependencies]
python = "^3.10"
fastapi = "^0.103.2"


[build-system]
requires = ["poetry-core"]
build-backend = "poetry.core.masonry.api"
poetry.lock
# This file is automatically @generated by Poetry 1.6.1 and should not be changed by hand.

[[package]]
name = "annotated-types"
version = "0.6.0"
description = "Reusable constraint types to use with typing.Annotated"
optional = false
python-versions = ">=3.8"
files = [
    {file = "annotated_types-0.6.0-py3-none-any.whl", hash = "sha256:0641064de18ba7a25dee8f96403ebc39113d0cb953a01429249d5c7564666a43"},
    {file = "annotated_types-0.6.0.tar.gz", hash = "sha256:563339e807e53ffd9c267e99fc6d9ea23eb8443c08f112651963e24e22f84a5d"},
]

[[package]]
name = "anyio"
version = "3.7.1"
description = "High level compatibility layer for multiple asynchronous event loop implementations"
optional = false
python-versions = ">=3.7"
files = [
    {file = "anyio-3.7.1-py3-none-any.whl", hash = "sha256:91dee416e570e92c64041bd18b900d1d6fa78dff7048769ce5ac5ddad004fbb5"},
    {file = "anyio-3.7.1.tar.gz", hash = "sha256:44a3c9aba0f5defa43261a8b3efb97891f2bd7d804e0e1f56419befa1adfc780"},
]

[package.dependencies]
exceptiongroup = {version = "*", markers = "python_version < \"3.11\""}
idna = ">=2.8"
sniffio = ">=1.1"

[package.extras]
doc = ["Sphinx", "packaging", "sphinx-autodoc-typehints (>=1.2.0)", "sphinx-rtd-theme (>=1.2.2)", "sphinxcontrib-jquery"]
test = ["anyio[trio]", "coverage[toml] (>=4.5)", "hypothesis (>=4.0)", "mock (>=4)", "psutil (>=5.9)", "pytest (>=7.0)", "pytest-mock (>=3.6.1)", "trustme", "uvloop (>=0.17)"]
trio = ["trio (<0.22)"]

[[package]]
name = "exceptiongroup"
version = "1.1.3"
description = "Backport of PEP 654 (exception groups)"
optional = false
python-versions = ">=3.7"
files = [
    {file = "exceptiongroup-1.1.3-py3-none-any.whl", hash = "sha256:343280667a4585d195ca1cf9cef84a4e178c4b6cf2274caef9859782b567d5e3"},
    {file = "exceptiongroup-1.1.3.tar.gz", hash = "sha256:097acd85d473d75af5bb98e41b61ff7fe35efe6675e4f9370ec6ec5126d160e9"},
]

[package.extras]
test = ["pytest (>=6)"]

[[package]]
name = "fastapi"
version = "0.103.2"
description = "FastAPI framework, high performance, easy to learn, fast to code, ready for production"
optional = false
python-versions = ">=3.7"
files = [
    {file = "fastapi-0.103.2-py3-none-any.whl", hash = "sha256:3270de872f0fe9ec809d4bd3d4d890c6d5cc7b9611d721d6438f9dacc8c4ef2e"},
    {file = "fastapi-0.103.2.tar.gz", hash = "sha256:75a11f6bfb8fc4d2bec0bd710c2d5f2829659c0e8c0afd5560fdda6ce25ec653"},
]

[package.dependencies]
anyio = ">=3.7.1,<4.0.0"
pydantic = ">=1.7.4,<1.8 || >1.8,<1.8.1 || >1.8.1,<2.0.0 || >2.0.0,<2.0.1 || >2.0.1,<2.1.0 || >2.1.0,<3.0.0"
starlette = ">=0.27.0,<0.28.0"
typing-extensions = ">=4.5.0"

[package.extras]
all = ["email-validator (>=2.0.0)", "httpx (>=0.23.0)", "itsdangerous (>=1.1.0)", "jinja2 (>=2.11.2)", "orjson (>=3.2.1)", "pydantic-extra-types (>=2.0.0)", "pydantic-settings (>=2.0.0)", "python-multipart (>=0.0.5)", "pyyaml (>=5.3.1)", "ujson (>=4.0.1,!=4.0.2,!=4.1.0,!=4.2.0,!=4.3.0,!=5.0.0,!=5.1.0)", "uvicorn[standard] (>=0.12.0)"]

[[package]]
name = "idna"
version = "3.4"
description = "Internationalized Domain Names in Applications (IDNA)"
optional = false
python-versions = ">=3.5"
files = [
    {file = "idna-3.4-py3-none-any.whl", hash = "sha256:90b77e79eaa3eba6de819a0c442c0b4ceefc341a7a2ab77d7562bf49f425c5c2"},
    {file = "idna-3.4.tar.gz", hash = "sha256:814f528e8dead7d329833b91c5faa87d60bf71824cd12a7530b5526063d02cb4"},
]

[[package]]
name = "pydantic"
version = "2.4.2"
description = "Data validation using Python type hints"
optional = false
python-versions = ">=3.7"
files = [
    {file = "pydantic-2.4.2-py3-none-any.whl", hash = "sha256:bc3ddf669d234f4220e6e1c4d96b061abe0998185a8d7855c0126782b7abc8c1"},
    {file = "pydantic-2.4.2.tar.gz", hash = "sha256:94f336138093a5d7f426aac732dcfe7ab4eb4da243c88f891d65deb4a2556ee7"},
]

[package.dependencies]
annotated-types = ">=0.4.0"
pydantic-core = "2.10.1"
typing-extensions = ">=4.6.1"

[package.extras]
email = ["email-validator (>=2.0.0)"]

[[package]]
name = "pydantic-core"
version = "2.10.1"
description = ""
optional = false
python-versions = ">=3.7"
files = [
    {file = "pydantic_core-2.10.1-cp310-cp310-macosx_10_7_x86_64.whl", hash = "sha256:d64728ee14e667ba27c66314b7d880b8eeb050e58ffc5fec3b7a109f8cddbd63"},
    {file = "pydantic_core-2.10.1-cp310-cp310-macosx_11_0_arm64.whl", hash = "sha256:48525933fea744a3e7464c19bfede85df4aba79ce90c60b94d8b6e1eddd67096"},
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python-versions = "^3.10"
content-hash = "1e26becac1426091d33001aa1af55452533597fee9f139be0da6ba518109bd0a"

@bouk
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bouk commented Oct 12, 2023

I can confirm this fixes the segfault for me. @sciyoshi please look at the failing checks:

https://github.com/nix-community/poetry2nix/actions/runs/6395553049/job/17359497715?pr=1329

https://github.com/nix-community/poetry2nix/actions/runs/6395553049/job/17359498784?pr=1329

And try to resolve them

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This pull request has been mentioned on NixOS Discourse. There might be relevant details there:

https://discourse.nixos.org/t/function-anonymous-lambda-called-with-unexpected-argument/34267/2

"flit",
"flit-core",
"pbr",
"flitBuildHook",
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It's kinda hard to tell that this is the only line which changed without ignoring whitespace. Would it be possible to either move the whitespace change to a separate commit or omit it entirely?

@cpcloud cpcloud force-pushed the new-bootstrap-fixes branch 2 times, most recently from 94771b4 to 4cbc407 Compare October 24, 2023 10:33
@cpcloud cpcloud requested review from adisbladis and K900 October 25, 2023 09:03
@K900 K900 mentioned this pull request Oct 25, 2023
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@adisbladis adisbladis added this pull request to the merge queue Oct 25, 2023
@adisbladis adisbladis removed this pull request from the merge queue due to the queue being cleared Oct 25, 2023
@adisbladis adisbladis merged commit e40ed93 into nix-community:master Oct 25, 2023
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@takeda
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takeda commented Oct 26, 2023

@cpcloud one of latest commits in this PR removed this from flake.nix:

legacyPackages = poetry2nix;

Is there a better way to include poetry2nix from another flake than using overlay? I try to not use overlays unnecessary due to recommendations here: https://zimbatm.com/notes/1000-instances-of-nixpkgs

@K900
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K900 commented Oct 26, 2023

import poetry2nix { inherit pkgs; } should work. Also, we should probably update the example...

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takeda commented Oct 26, 2023

That works, thank you!

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