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[tox] | ||
requires = | ||
tox>=4 | ||
envlist = | ||
py3{9,10,11,12,13}-none # Test nipype functionality on all versions | ||
py3{9,12,13}-full # Test with extra dependencies on oldest and two newest | ||
py39-min # Test with minimal dependencies | ||
py3{11,12,13}-pre # Test with pre-release on SPEC0-supported Python | ||
skip_missing_interpreters = true | ||
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# Configuration that allows us to split tests across GitHub runners effectively | ||
[gh-actions] | ||
python = | ||
3.9: py39 | ||
3.10: py310 | ||
3.11: py311 | ||
3.12: py312 | ||
3.13: py313 | ||
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||
[gh-actions:env] | ||
DEPENDS = | ||
min: min | ||
none: none | ||
full: full | ||
pre: pre | ||
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||
[testenv] | ||
description = Pytest with coverage | ||
labels = test | ||
pip_pre = | ||
pre: true | ||
pass_env = | ||
# Parsed from `git grep getenv` and `git grep os.environ` | ||
# May not all be needed | ||
NIPYPE_NO_ET | ||
NO_ET | ||
ANTSPATH | ||
CI_SKIP_TEST | ||
FREESURFER_HOME | ||
USER | ||
FSLDIR | ||
FSLOUTPUTTYPE | ||
FSL_COURSE_DATA | ||
NIPYPE_NO_MATLAB | ||
OMP_NUM_THREADS | ||
NIPYPE_NO_R | ||
SPMMCRCMD | ||
FORCE_SPMMCR | ||
LOGNAME | ||
AWS_ACCESS_KEY_ID | ||
AWS_SECRET_ACCESS_KEY | ||
MATLABCMD | ||
MRTRIX3_HOME | ||
RCMD | ||
ETS_TOOLKIT | ||
NIPYPE_CONFIG_DIR | ||
DISPLAY | ||
PATHEXT | ||
# getpass.getuser() sources for Windows: | ||
LOGNAME | ||
USER | ||
LNAME | ||
USERNAME | ||
# Pass user color preferences through | ||
PY_COLORS | ||
FORCE_COLOR | ||
NO_COLOR | ||
CLICOLOR | ||
CLICOLOR_FORCE | ||
PYTHON_GIL | ||
deps = | ||
py313: traits @ git+https://github.com/enthought/traits.git@10954eb | ||
full: dipy @ git+https://github.com/dipy/dipy@master | ||
extras = | ||
tests | ||
full: doc | ||
full: profiler | ||
full: duecredit | ||
full: ssh | ||
full: nipy | ||
setenv = | ||
FSLOUTPUTTYPE=NIFTI_GZ | ||
pre: PIP_EXTRA_INDEX_URL=https://pypi.anaconda.org/scientific-python-nightly-wheels/simple | ||
pre: UV_EXTRA_INDEX_URL=https://pypi.anaconda.org/scientific-python-nightly-wheels/simple | ||
uv_resolution = | ||
min: lowest-direct | ||
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commands = | ||
python -c "import nipype; print(nipype.__version__)" | ||
pytest --durations=20 --durations-min=1.0 --cov-report term-missing {posargs:-n auto} |