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ui.R
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ui.R
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ui <- fluidPage(
#########################=========================#########################
# 1. ##########========== HTML AND JAVA CODE ==========##########
useShinyjs(),
tags$head(includeScript("Hotjar.js")),
tags$head(includeScript("zoom_to_location_button.js")),
tags$head(includeScript("disable_backspace.js")),
tags$head(includeCSS("page_style.css")),
# 1.1 #####===== General style for every widget =====#####
tags$style(".popover {max-width: 650px;}"),
tags$style(".selectize-control.single .selectize-input:after {right: 0px; margin-right: 3px;}"),
tags$style(".selectize-input {min-height: 0px; height: 20px; padding: 0px 0px 20px 5px; font-size: 10px; margin-top: 7px; text-align: left;}"),
tags$style(".selectize-dropdown {font-size: 10px; text-align: left;}"),
tags$head(tags$style(HTML(".shiny-split-layout > div {overflow: visible;}"))),
tags$head(tags$style(HTML(".form-group, .selectize-control {margin-bottom: 0px;} .box-body {padding-bottom: 0px;}"))),
tags$head(tags$style(HTML(".newfileinput {width: 0.1px; height: 0.1px; opacity: 0; overflow: hidden; position: absolute; z-index: -1;}"))),
tags$head(tags$style(HTML("#initial_map_view_div .tooltip {width: 145px;}"))),
tags$head(tags$style(HTML(".shiny-input-container > label {margin-bottom: -30px;}"))),
tags$head(
tags$style(
HTML("
#author_name {height: 22px; margin-top: 7px; font-size: 10px; padding: 0px 0px 0px 5px;}
#Author {height: 22px; margin-top: 7px; font-size: 10px; padding: 0px 0px 0px 5px;}
#institution {height: 22px; margin-top: 7px; font-size: 10px; padding: 0px 0px 0px 5px;}
#author_email {height: 22px; margin-top: 7px; font-size: 10px; padding: 0px 0px 0px 5px;}
#doi {height: 22px; margin-top: 7px; font-size: 10px; padding: 0px 0px 0px 5px;}
#doi::placeholder {color: #DEDEDE;}
#paper_title {height: 22px; margin-top: 7px; font-size: 10px; padding: 0px 0px 0px 5px;}
#journal {height: 22px; margin-top: 7px; font-size: 10px; padding: 0px 0px 0px 5px;}
#coordinates {height: 22px; margin-top: 7px; font-size: 10px; padding: 0px 0px 0px 5px;}
#coordinates::placeholder {color: #DEDEDE;}
#remark {height: 22px; margin-top: 7px; font-size: 10px; padding: 0px 0px 0px 5px;}
#remark::placeholder {color: #DEDEDE;}
#filterdata_ISO3+ div>.selectize-input{height: 55px !important}
#filterdata_species+ div>.selectize-input{height: 55px !important}
#filterdata_sample_origin+ div>.selectize-input{height: 55px !important}
#filterdata_pathogen+ div>.selectize-input{height: 55px !important}
#filterdata_compound+ div>.selectize-input{height: 55px !important}
#filterdata_compound_class+ div>.selectize-input{height: 55px !important}
#filterdata_compound_class+ .selectize-control.single .selectize-input:after{content: none;}
#filterdata_compound_agisar+ div>.selectize-input{height: 55px !important}"))),
# 2. ##########========== WORLD MAP ==========##########
div(id = "map",
leafletOutput(outputId = "world_map",
width = "100%",
height = "100%"), # percentage height can be set thanks to the .css file
hidden(
absolutePanel(id = "name_Maps_panel",
fixed = TRUE,
top = 12,
left = "auto",
right = 96,
bottom = "auto",
width = "auto",
height = "auto",
h4(strong("Maps"))
)
),
hidden(
absolutePanel(id = "target_panel",
fixed = TRUE,
top = 21,
left = 10,
right = "auto",
bottom = "auto",
width = "auto",
height = "auto",
clearableTextInput(inputId = "target",
label = NULL,
value = "",
placeholder = "Country, city, address, or latitude and longitude")
)
),
conditionalPanel(condition = "input.target != ''",
absolutePanel(id = "zoom_to_location_panel",
fixed = TRUE,
top = 21.4,
left = 360,
right = "auto",
bottom = "auto",
div(id = "zoom_to_location_div",
actionButton(inputId = "zoom_to_location",
label = strong("Go!")))
)
),
hidden(
absolutePanel(id = "initial_map_view_panel",
fixed = TRUE,
top = 21.4,
left = 410,
right = "auto",
bottom = "auto",
div(id = "initial_map_view_div",
actionButton(inputId = "initial_map_view",
label = icon(name = "globe-americas",
lib = "font-awesome")),
bsTooltip(id = "initial_map_view",
title = "World map initial view",
placement = "right",
trigger = "hover"))
)
),
# 3. ##########========== PANELS ==========##########
# 3.1 #####===== Initial panel =====#####
tags$div(id = "initial_panel_division",
absolutePanel(id = "initial_panel",
fixed = TRUE,
top = "32%",
right = 0,
left = 0,
bottom = "auto",
width = "33.5%",
height = "auto",
actionButton(inputId = "close_initial_panel",
label = icon(name = "times",
lib = "font-awesome"),
style = "position: absolute;
top: 0;
right: 0;
background-color: rgba(0, 0, 0, 0);
border-width: 0px;
padding: 0px 5px 0px 0px;"),
tags$div(style = "height: 3px;"),
tags$p(strong("Welcome to resistancebank.org"),
style = "font-size: 2.6vmin;
text-align: center;"),
tags$div(style = "height: 13px;"),
tags$p("The open access repository for surveys and maps of antimicrobial resistance in animals",
style = "font-size: 1.9vmin;
text-align: center;"),
tags$div(style = "height: 32px;"),
tags$table(style = "width: 100%;",
tags$tr(tags$td(style = "width: 33.3%;",
align = "center",
actionButton(inputId = "explore_amr_map",
label = tags$img(src = "world_icon.png",
width = "96%",
height = "95%",
align = "center"),
style = "box-shadow: none!important;
outline: 0;
background-color: transparent;")
),
tags$td(style = "width: 33.3%;",
align = "center",
actionButton(inputId = "add_your_survey1",
label = tags$img(src = "location-map_icon2.png",
height = "45%",
width = "45%",
align = "center"),
style = "box-shadow: none!important;
outline: 0;
background-color: transparent;")
),
tags$td(style = "width: 33.3%;",
align = "center",
NEWdownloadButton(outputId = "download_RESBANK2",
label = tags$img(src = "download_icon.png",
height = "54%",
width = "54%",
align = "center"))
)
),
tags$tr(tags$td(style = "width: 33.3%;",
align = "center",
tags$p(strong("Maps of antimicrobial resistance"),
style = "font-size: 1.3vmin;
text-align: center;")
),
tags$td(style = "width: 33.3%;",
align = "center",
tags$p(strong("Add your survey"),
style = "font-size: 1.3vmin;
text-align: center;")
),
tags$td(style = "width: 33.3%;",
align = "center",
tags$p(strong("Download antimicrobial resistance data"),
style = "font-size: 1.3vmin;
text-align: center;")
)
)
)
)
),
# 3.2 #####===== Controls panel =====#####
hidden(
absolutePanel(id = "controls_panel",
fixed = TRUE,
top = 160,
left = "auto",
right = 10,
bottom = "auto",
width = 142,
height = "auto",
fluidRow(
column(width = 12,
align = "left",
div(id = "controls_panel_Data_text",
h4(strong("Data"))
),
actionButton(inputId = "add_your_survey2",
label = div(icon(name = "map-marker-alt",
lib = "font-awesome"),
strong("Add your survey")),
align = "left"),
hidden(
actionButton(inputId = "close_add_your_survey_controls",
label = div(icon(name = "map-marker-alt",
lib = "font-awesome"),
strong("Add your survey")),
align = "left")
),
hidden(
actionButton(inputId = "close_add_your_survey_controls2",
label = div(icon(name = "map-marker-alt",
lib = "font-awesome"),
strong("Add your survey")),
align = "left")
),
actionButton(inputId = "display_filterdata_panel",
label = div(icon(name = "filter",
lib = "font-awesome"),
strong("Filter data")),
align = "left"),
hidden(
actionButton(inputId = "close_filterdata_panel_controls",
label = div(icon(name = "filter",
lib = "font-awesome"),
strong("Remove filter")),
align = "left")
),
actionButton(inputId = "display_Country_report_panel",
label = div(icon(name = "file-contract",
lib = "font-awesome"),
strong("Country report")),
align = "left"),
hidden(
actionButton(inputId = "close_country_report_panel_controls",
label = div(icon(name = "file-contract",
lib = "font-awesome"),
strong("Country report")),
align = "left")
),
br(),
downloadButton(outputId = "download_RESBANK",
label = strong("Resistance bank"),
align = "left"),
br(),
downloadButton(outputId = "download_P50",
label = strong("AMR hotspots map"),
align = "left"),
br(),
br(),
br(),
div(id = "controls_panel_Data_text",
h4(strong("Info"))
),
actionButton(inputId = "display_about_panel",
label = div(icon(name = "info-circle",
lib = "font-awesome"),
strong("About")),
align = "left"),
hidden(
actionButton(inputId = "close_about_panel_controls",
label = div(icon(name = "info-circle",
lib = "font-awesome"),
strong("About")),
align = "left")
),
actionButton(inputId = "display_limitations_panel",
label = div(icon(name = "exclamation-triangle",
lib = "font-awesome"),
strong("Limitations")),
align = "left"),
hidden(
actionButton(inputId = "close_limitations_panel_controls",
label = div(icon(name = "exclamation-triangle",
lib = "font-awesome"),
strong("Limitations")),
align = "left")
),
actionButton(inputId = "open_GitHub_repository",
label = div(icon(name = "github",
lib = "font-awesome"),
strong("GitHub")),
onclick ="window.open('https://github.com/hegep-eth/resistancebank.org', '_blank')",
align = "left"),
actionButton(inputId = "open_Youtube_video",
label = div(icon(name = "youtube",
lib = "font-awesome"),
strong("Tutorial")),
onclick ="window.open('https://youtu.be/TpMQ_3JLJ2I', '_blank')",
align = "left")
)
)
)
),
# 3.3 #####===== Add your survey panel =====#####
hidden(
div(id = "add_your_survey_division",
absolutePanel(id = "add_your_survey_panel",
fixed = TRUE,
draggable = FALSE,
top = 11,
right = 160,
left = "auto",
bottom = "auto",
width = "30%",
height = "auto",
actionButton(inputId = "close_add_your_survey_division",
label = icon(name = "times",
lib = "font-awesome"),
style = "position: absolute;
top: 0;
right: 0;
background-color: rgba(0, 0, 0, 0);
border-width: 0px;
padding: 0px 5px 0px 0px;"),
tags$div(style = "height: 20px;"),
tags$table(style = "width: 100%",
tags$tr(tags$td(style = "width: 33.3%;",
align = "center",
actionButton(inputId = "fill_form",
label = img(src = "form.png",
height = "85.5%",
width = "85.5%",
align = "center"),
style = "border-width: 0px;
box-shadow: none!important;
outline: 0;
background-color: transparent;")
),
tags$td(style = "width: 33.3%;",
align = "center",
NEWfileInput(inputId = "upload_resistancebank_template",
label = tags$img(src = "upload_template.png",
height = "81.3%",
width = "81.3%",
align = "center"),
labelIcon = NULL,
accept = c(".xlsx"),
progress = FALSE)
),
tags$td(style = "width: 33.3%;",
align = "center",
a(actionButton(inputId = "contact_us_for_survey",
label = img(src = "contact_us.png",
height = "85.5%",
width = "85.5%",
align = "center"),
style = "border-width: 0px;
box-shadow: none!important;
outline: 0;
background-color: transparent;"),
href = "mailto:[email protected]")
)
),
tags$tr(tags$td(style = "width: 33.3%",
align = "center",
h5("Fill a form")
),
tags$td(style = "width: 33.3%",
align = "center",
h5(HTML('Use this <a href="https://amr-hegep-bucket.s3.eu-central-1.amazonaws.com/Downloads/resistancebank_template.zip" download>.xslx template</a>'))
),
tags$td(style = "width: 33.3%",
align = "center",
h5("Contact us")
)
)
)
)
)
),
# 3.3.1 ###= Form panel =#####
hidden(
tags$div(id = "form",
absolutePanel(id = "form_panel", ###!!!!!! ricordati che deve essere lo stesso su ogni schermo!!!
fixed = TRUE,
top = 11,
left = 130,
bottom = 30,
right = 160,
width = "auto",
height = "auto",
actionButton(inputId = "close_form",
label = icon(name = "times",
lib = "font-awesome"),
style = "position: absolute;
top: 0;
right: 0;
background-color: rgba(0, 0, 0, 0);
border-width: 0px;
padding: 0px 5px 0px 0px;
z-index: 100000;"),
# 3.3.1.1 ###= User information =#####
fluidRow(
column(width = 6,
hidden(
actionButton(inputId = "show_user_information_panel",
label = icon(name = "plus",
class = "plus_investigator",
lib = "font-awesome"),
style = "border-radius: 50%; border: 1.5px solid #2D2D2D; background-color:#2D2D2D; padding: 0.5px 3px 0.5px 3px; margin-bottom: 7px; font-size: 65%;"),
tags$style(".plus_investigator {color: #FFFFFF;}")
),
actionButton(inputId = "hide_user_information_panel",
label = icon(name = "minus",
class = "minus_investigator",
lib = "font-awesome"),
style = "border-radius: 50%; border: 1.5px solid #2D2D2D; background-color:#2D2D2D; padding: 0.5px 3px 0.5px 3px; margin-bottom: 7px; font-size: 65%;"),
tags$style(".minus_investigator {color: #FFFFFF;}"),
div(style = "display: inline-block; margin-left: 5px;",
h3(strong(" Investigator")))
)
),
div(id = "user_information_panel",
fluidRow(
column(width = 2,
textInput(inputId = "author_name",
label = h6(mandatory_asterisk("First name")),
value = "")
),
column(width = 2,
textInput(inputId = "Author",
label = h6(mandatory_asterisk("Last name")),
value = "")
),
column(width = 2,
textInput(inputId = "institution",
label = h6("Institution"),
value = "")
),
column(width = 2,
textInput(inputId = "author_email",
label = h6(mandatory_asterisk("e-mail")),
value = "")
)
)
),
br(),
# 3.3.1.2 ###= Survey information =#####
fluidRow(
column(width = 6,
hidden(
actionButton(inputId = "show_study_information_panel",
label = icon(name = "plus",
class = "plus_study_information",
lib = "font-awesome"),
style = "border-radius: 50%; border: 1.5px solid #2D2D2D; background-color:#2D2D2D; padding: 0.5px 3px 0.5px 3px; margin-bottom: 7px; font-size: 65%;"),
tags$style(".plus_study_information {color: #FFFFFF;}")
),
actionButton(inputId = "hide_study_information_panel",
label = icon(name = "minus",
class = "minus_study_information",
lib = "font-awesome"),
style = "border-radius: 50%; border: 1.5px solid #2D2D2D; background-color:#2D2D2D; padding: 0.5px 3px 0.5px 3px; margin-bottom: 7px; font-size: 65%;"),
tags$style(".minus_study_information {color: #FFFFFF;}"),
div(style = "display: inline-block; margin-left: 5px;",
h3(strong(" Survey information")))
)
),
tags$div(id = "study_information_panel",
# DOI
tags$table(style = "width: 100%;
table-layout: fixed;",
tags$tr(tags$td(style = "width: 14.28%;",
align = "left",
textInput(inputId = "doi",
label = h6("Digital Object Identifier"),
placeholder = "10.1126/science.aao1495",
value = "",
width = "95%")
),
# PUBLICATION YEAR
tags$td(style = "width: 14.28%;",
align = "left",
selectizeInput(inputId = "PubDate",
label = h6("Publication year"),
choices = "",
selected = "",
multiple = FALSE,
width = "95%",
options = list(maxItems = 1,
create = FALSE,
closeAfterSelect = TRUE))
),
# Study Title
tags$td(style = "width: 14.28%;",
align = "left",
textInput(inputId = "paper_title",
label = h6("Title"),
value = "",
width = "95%")
),
# Study Journal
tags$td(style = "width: 14.28%;",
align = "left",
textInput(inputId = "journal",
label = h6("Journal"),
value = "",
width = "95%")
),
# Country of study
tags$td(style = "width: 14.28%;",
align = "left",
selectizeInput(inputId = "country_study",
label = h6(mandatory_asterisk("Country")),
choices = c("China" = "",
countries_list),
selected = "",
multiple = TRUE,
width = "95%",
options = list(maxItems = 1,
create = FALSE,
closeAfterSelect = TRUE))
),
# Coordinates
tags$td(style = "width: 14.28%;",
align = "left",
textInput(inputId = "coordinates",
label = h6(mandatory_asterisk("Location")),
value = "",
placeholder = "Place name or latitude/longitude",
width = "95%")
),
# Sampling scheme
tags$td(style = "width: 14.28%;",
align = "left",
selectizeInput(inputId = "sampling_scheme",
label = h6("Sampling scheme"),
choices = c("Routine" = "",
"Longitudinal study",
"Mandated study",
"One-time research survey",
"Routine"),
selected = "",
multiple = FALSE,
width = "95%",
options = list(maxItems = 1,
create = FALSE,
closeAfterSelect = TRUE))
)
)
)
),
br(),
# 3.3.1.3 ###= Antimicrobial resistance =#####
fluidRow(
column(width = 6,
hidden(
actionButton(inputId = "show_amr_panel",
label = icon(name = "plus",
class = "plus_antimicrobial_resistance",
lib = "font-awesome"),
style = "border-radius: 50%; border: 1.5px solid #2D2D2D; background-color:#2D2D2D; padding: 0.5px 3px 0.5px 3px; margin-bottom: 7px; font-size: 65%;"),
tags$style(".plus_antimicrobial_resistance {color: #FFFFFF;}")
),
actionButton(inputId = "hide_amr_panel",
label = icon(name = "minus",
class = "minus_antimicrobial_resistance",
lib = "font-awesome"),
style = "border-radius: 50%; border: 1.5px solid #2D2D2D; background-color:#2D2D2D; padding: 0.5px 3px 0.5px 3px; margin-bottom: 7px; font-size: 65%;"),
tags$style(".minus_antimicrobial_resistance {color: #FFFFFF;}"),
div(style = "display: inline-block; margin-left: 5px;",
h3(strong(" Antimicrobial resistance")))
)
),
source(file = "modules/ui_antimicrobial-resistance-form.R",
local = TRUE)$value,
br(),
# 3.3.1.4 ###= Comments =#####
fluidRow(
column(width = 6,
actionButton(inputId = "show_remark_panel",
label = icon(name = "plus",
class = "plus_remark",
lib = "font-awesome"),
style = "border-radius: 50%; border: 1.5px solid #2D2D2D; background-color:#2D2D2D; padding: 0.5px 3px 0.5px 3px; margin-bottom: 7px; font-size: 65%;"),
tags$style(".plus_remark {color: #FFFFFF;}"),
hidden(
actionButton(inputId = "hide_remark_panel",
label = icon(name = "minus",
class = "minus_remark",
lib = "font-awesome"),
style = "border-radius: 50%; border: 1.5px solid #2D2D2D; background-color:#2D2D2D; padding: 0.5px 3px 0.5px 3px; margin-bottom: 7px; font-size: 65%;"),
tags$style(".minus_remark {color: #FFFFFF;}")
),
div(style = "display: inline-block; margin-left: 5px;",
h3(strong(" Comments")))
)
),
hidden(
div(id = "remark_panel",
fluidRow(
column(width = 12,
textInput(inputId = "remark",
label = "",
value = "",
placeholder = "General comments about the samples, methodologies, guidelines and/or results",
width = "100%")
)
)
)
),
br(),
br(),
# 3.3.1.5 ###= Submit =#####
fluidRow(id = "submit_button",
column(width = 12,
align = "center",
actionButton(inputId = "submit",
label = "Add your survey",
icon(name = "upload",
lib = "font-awesome"))
)
)
)
)
),
# 3.4 #####===== Filter data panel =====#####
hidden(
absolutePanel(id = "filterdata_panel",
fixed = TRUE,
draggable = FALSE,
top = 11,
right = 160,
left = "auto",
bottom = "auto",
width = "48%",
height = "auto",
tags$p(".",
style = "color: white;"),
hidden(
actionButton(inputId = "show_filterdata_panel_inputs",
label = icon(name = "plus",
lib = "font-awesome"),
style = "position: absolute;
top: 0;
right: 0;
background-color: rgba(0, 0, 0, 0);
border-width: 0px;
padding: 0px 30px 0px 0px;")
),
actionButton(inputId = "hide_filterdata_panel_inputs",
label = icon(name = "minus",
lib = "font-awesome"),
style = "position: absolute;
top: 0;
right: 0;
background-color: rgba(0, 0, 0, 0);;
border-width: 0px;
padding: 0px 30px 40px 0px;"),
actionButton(inputId = "close_filterdata_panel",
label = icon(name = "times",
lib = "font-awesome"),
style = "position: absolute;
top: 0;
right: 0;
background-color: rgba(0, 0, 0, 0);
border-width: 0px;
padding: 0px 5px 0px 0px;"),
tags$div(id = "filterdata_panel_inputs",
tags$table(style = "width: 100%;",
tags$tr(tags$td(style = "width: 10%;",
align = "center",
img(src = "filter-figures/world-americas.png",
width = "75%")
),
tags$td(style = "width: 40%;",
align = "left",
selectizeInput(inputId = "filterdata_ISO3",
label = h5("Countries"),
choices = c("India" = "",
as.list(setNames(object = Countries_PPS$ISO3,
nm = Countries_PPS$Country))),
selected = "",
multiple = TRUE,
width = "94%",
options = list(create = FALSE,
closeAfterSelect = FALSE))
),
tags$td(style = "width: 10%;",
align = "center",
tags$img(src = "filter-figures/compound.png",
width = "75%")
),
tags$td(style = "width: 40%;",
align = "left",
selectizeInput(inputId = "filterdata_compound",
label = h5("Antibiotics"),
choices = c("Penicillin" = "",
lapply(X = Antibiotics_list,
FUN = function(i) {
i[-c(1, 3, 4, 5, 6, 7, 8)]
})),
selected = "",
multiple = TRUE,
width = "94%",
options = list(create = FALSE,
closeAfterSelect = FALSE))
)
),
tags$tr(tags$td(style = "width: 10%;
padding-top: 10px;",
align = "center",
img(src = "filter-figures/species.png",
width = "75%")
),
tags$td(style = "width: 40%;
padding-top: 10px;",
align = "left",
selectizeInput(inputId = "filterdata_species",
label = h5("Species"),
choices = c("Chicken" = "",
sort(unique(resistancebank$Species))),
selected = "",
multiple = TRUE,
width = "94%",
options = list(create = FALSE,
closeAfterSelect = FALSE))
),
tags$td(style = "width: 10%
padding-top: 10px;",
align = "center",
img(src = "filter-figures/compound_class.png",
width = "75%")
),
tags$td(style = "width: 40%;
padding-top: 10px;",
align = "left",
selectizeInput(inputId = "filterdata_compound_class",
label = h5("Antibiotics class (WHO)"),
choices = c(sort(unique(resistancebank$Class_WHO[resistancebank$Class_WHO != "NA (NA)"]))),
selected = NULL,
multiple = TRUE,
width = "94%",
options = list(placeholder = "3rd Generation Cephalosporin (Critically important)",
create = FALSE,
closeAfterSelect = TRUE,
maxItems = 1))
)
),
tags$tr(tags$td(style = "width: 10%;
padding-top: 10px;",
align = "center",
img(src = "filter-figures/sample_origin.png",
width = "75%")
),
tags$td(style = "width: 40%;
padding-top: 10px;",
align = "left",
selectizeInput(inputId = "filterdata_sample_origin",
label = h5("Samples origin"),
choices = list("Food products" = "",
"Fecal" = "Environment",
"Food products" = "Product",
"Live animal" = "LivingAnimal",
"Slaughtered" = "KilledAnimal"),
selected = "",
multiple = TRUE,
width = "94%",
options = list(create = FALSE,
closeAfterSelect = FALSE))
),
tags$td(style = "width: 10%;
padding-top: 10px;",
align = "center",
img(src = "filter-figures/compound_agisar.png",
width = "75%")
),
tags$td(style = "width: 40%;
padding-top: 10px;",
align = "left",
selectizeInput(inputId = "filterdata_compound_agisar",
label = h5("AGISAR combination"),
choices = c("E. coli - Tetracycline" = "",
sort(unique(resistancebank_amr$pathogen_compound))),
selected = "",
multiple = TRUE,
width = "94%",
options = list(create = FALSE,
closeAfterSelect = FALSE)))
),
tags$tr(tags$td(style = "width: 10%;
padding-top: 10px;",
align = "center",
img(src = "filter-figures/pathogen.png",
width = "75%")
),
tags$td(style = "width: 40%;
padding-top: 10px;",
align = "left",
selectizeInput(inputId = "filterdata_pathogen",
label = h5("Pathogens"),
choices = c("E. coli" = "",
if ("Enterococcus" %in% unique(sort(resistancebank$Pathogens))) {
setNames(object = as.list(unique(sort(resistancebank$Pathogens))),
nm = c("Campylobacter spp.",
"E. coli",
"Enterococcus spp.",
"S. aureus",
"Salmonella spp. (non-typhoidal)"))
} else {
setNames(object = as.list(unique(sort(resistancebank$Pathogens))),
nm = c("Campylobacter spp.",
"E. coli",
"S. aureus",
"Salmonella spp. (non-typhoidal)"))
}),
selected = "",
multiple = TRUE,
width = "94%",
options = list(create = FALSE,
closeAfterSelect = FALSE))
),
tags$td(colspan = 2,
style = "width: 50%;",
uiOutput(outputId = "filterdata_buttons_and_info")
)
)
),
tags$br(),
fluidRow(
column(width = 12,
DT::dataTableOutput(outputId = "filterdata_papers",
width = "100%")
)
)
)
)
),
# 3.5 #####===== Country report panel =====#####
hidden(
absolutePanel(id = "download_Country_report_panel",
fixed = TRUE,
draggable = FALSE,
top = 11,
right = 160,
left = "auto",
bottom = "auto",
width = "55%",
height = "auto",
actionButton(inputId = "close_country_report_panel",
label = icon(name = "times",
lib = "font-awesome"),
style = "position: absolute;
top: 0;
right: 0;
background-color: rgba(0, 0, 0, 0);
border-width: 0px;
padding: 0px 5px 0px 0px;"),
br(),
tags$table(style = "width: 100%;",
tags$tr(tags$td(style = "width: 30%",
align = "left",
h5("Country"),
shinyWidgets::pickerInput(inputId = "Country_report_nation",
label = NULL,
choices = c(Countries$Country_ISO3),
multiple = FALSE,
options = list(
size = 10,
`live-search` = TRUE
))
),
tags$td(style = "width: 28%;"),
tags$td(style = "width: 21%;",
align = "right",
withBusyIndicatorUI(
downloadButton(outputId = "download_Country_report",
label = h5("Download as PDF",
style = "display: inline-block;"),
style = "box-shadow: none!important;
outline: 0;
border-width: 0px;
padding: 0px 5px 0px 5px;"))
),
tags$td(style = "width: 21%",
align = "left",
withBusyIndicatorUI(
downloadButton(outputId = "download_Country_data",
label = h5("Download data",
style = "display: inline-block;"),
style = "box-shadow: none!important;
outline: 0;
border-width: 0px;
padding: 0px 5px 0px 5px;"))
)
)
),
div(style = "height: 0.5vh;"),
fluidRow(
column(width = 12,
uiOutput(outputId = "country_report_images")
)