From b64054e145272c3b8005716277ef4b629c594290 Mon Sep 17 00:00:00 2001 From: Wolf Vollprecht Date: Wed, 10 Apr 2024 06:01:34 -0400 Subject: [PATCH] docs: add rstudio docs (#1144) Co-authored-by: Ruben Arts Co-authored-by: Ruben Arts --- docs/ide_integration/r_studio.md | 61 + examples/r/example-plot.R | 11 + examples/r/pixi.lock | 6153 ++++++++++++++++++++++++++++++ examples/r/pixi.toml | 23 + mkdocs.yml | 1 + 5 files changed, 6249 insertions(+) create mode 100644 docs/ide_integration/r_studio.md create mode 100644 examples/r/example-plot.R create mode 100644 examples/r/pixi.lock create mode 100644 examples/r/pixi.toml diff --git a/docs/ide_integration/r_studio.md b/docs/ide_integration/r_studio.md new file mode 100644 index 000000000..3da89d85b --- /dev/null +++ b/docs/ide_integration/r_studio.md @@ -0,0 +1,61 @@ +# Developing R scripts in RStudio + +You can use `pixi` to manage your R dependencies. The conda-forge channel contains a wide range of R packages that can be installed using `pixi`. + +## Installing R packages + +R packages are usually prefixed with `r-` in the conda-forge channel. To install an R package, you can use the following command: + +```bash +pixi add r- +# for example +pixi add r-ggplot2 +``` + +## Using R packages in RStudio + +To use the R packages installed by `pixi` in RStudio, you need to run `rstudio` from an activated environment. This can be achieved by running RStudio from `pixi shell` or from a task in the `pixi.toml` file. + +## Full example + +The full example can be found here: [RStudio example](https://github.com/prefix-dev/pixi/tree/main/examples/r). +Here is an example of a `pixi.toml` file that sets up an RStudio task: + +```toml +[project] +name = "r" +channels = ["conda-forge"] +platforms = ["linux-64", "osx-64", "osx-arm64"] + +[target.linux.tasks] +rstudio = "rstudio" + +[target.osx.tasks] +rstudio = "open -a rstudio" +# or alternatively with the full path: +# rstudio = "/Applications/RStudio.app/Contents/MacOS/RStudio" + +[dependencies] +r = ">=4.3,<5" +r-ggplot2 = ">=3.5.0,<3.6" +``` + +Once RStudio has loaded, you can execute the following R code that uses the `ggplot2` package: + +```R +# Load the ggplot2 package +library(ggplot2) + +# Load the built-in 'mtcars' dataset +data <- mtcars + +# Create a scatterplot of 'mpg' vs 'wt' +ggplot(data, aes(x = wt, y = mpg)) + + geom_point() + + labs(x = "Weight (1000 lbs)", y = "Miles per Gallon") + + ggtitle("Fuel Efficiency vs. Weight") +``` + +!!! Note + This example assumes that you have installed RStudio system-wide. + We are working on updating RStudio as well as the R interpreter builds on Windows for maximum compatibility with `pixi`. diff --git a/examples/r/example-plot.R b/examples/r/example-plot.R new file mode 100644 index 000000000..d4cc2efb1 --- /dev/null +++ b/examples/r/example-plot.R @@ -0,0 +1,11 @@ +# Load the ggplot2 package +library(ggplot2) + +# Load the built-in 'mtcars' dataset +data <- mtcars + +# Create a scatterplot of 'mpg' vs 'wt' +ggplot(data, aes(x = wt, y = mpg)) + + geom_point() + + labs(x = "Weight (1000 lbs)", y = "Miles per Gallon") + + ggtitle("Fuel Efficiency vs. Weight") diff --git a/examples/r/pixi.lock b/examples/r/pixi.lock new file mode 100644 index 000000000..dd6552861 --- /dev/null +++ b/examples/r/pixi.lock @@ -0,0 +1,6153 @@ +version: 4 +environments: + default: + channels: + - url: https://conda.anaconda.org/conda-forge/ + packages: + linux-64: + - conda: https://conda.anaconda.org/conda-forge/linux-64/_libgcc_mutex-0.1-conda_forge.tar.bz2 + - 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Basic Usage: basic_usage.md - IDE Integration: - PyCharm: ide_integration/pycharm.md + - RStudio: ide_integration/r_studio.md - Tutorials: - ROS 2: tutorials/ros2.md - Examples: