quarto-publish.yml

# Simple workflow for deploying static content to GitHub Pages
name: Publish Quarto page to GitHub Pages

on:
  # Runs on pushes targeting the default branch
  push:
    branches: ["main"]

  # Allows you to run this workflow manually from the Actions tab
  workflow_dispatch:

# Sets permissions of the GITHUB_TOKEN to allow deployment to GitHub Pages
permissions:
  contents: read
  pages: write
  id-token: write

# Allow one concurrent deployment
concurrency:
  group: "pages"
  cancel-in-progress: true

jobs:
  # Single deploy job since we're just deploying
  publish-site:
    environment:
      name: github-pages
      url: ${{ steps.deployment.outputs.page_url }}
    runs-on: ubuntu-latest
    container:
      image: ghcr.io/dukestatsci/r_gh_actions:latest
    steps:
      - name: Dependencies
        uses: r-lib/actions/setup-r-dependencies@v2
        with:
         packages:
           any::knitr
           any::rmarkdown
           any::gt
           any::PHEindicatormethods
           any::tidyverse
           any::PostcodesioR
           any::remotes
      - name: Install packages
          run:
           remotes::install_github("nhs-r-community/NHSRpopulation")
           remotes::install_github("nhs-r-community/NHSRpostcodetools")
    
      - name: Checkout
        uses: actions/checkout@v4

      - name: Build site
        run: |
          quarto render
      
      - name: Setup Pages
        uses: actions/configure-pages@v3
      
      - name: Upload artifact
        uses: actions/upload-pages-artifact@v1
        with:
          path: '_book/'
      
      - name: Deploy to GitHub Pages
        id: deployment
        uses: actions/deploy-pages@v1