quarto-publish.yml

# Simple workflow for deploying static content to GitHub Pages
name: Publish Quarto page to GitHub Pages

on:
  # Runs on pushes targeting the default branch
  push:
    branches: ["main"]

  # Allows you to run this workflow manually from the Actions tab
  workflow_dispatch:

# Sets permissions of the GITHUB_TOKEN to allow deployment to GitHub Pages
permissions:
  contents: read
  pages: write
  id-token: write

# Allow one concurrent deployment
concurrency:
  group: "pages"
  cancel-in-progress: true

jobs:
  # Single deploy job since we're just deploying
  publish-site:
    environment:
      name: github-pages
      url: ${{ steps.deployment.outputs.page_url }}
    runs-on: ubuntu-latest
    container:
      image: ghcr.io/nhs-r-community/r_gh_actions:latest
    steps:
      - uses: actions/checkout@v4
      
      - uses: actions/cache@v4
        with:
          key: packages
          path: /usr/local/lib/R/site-library
      
      - name: Install Missing Packages
        run: |
          missing = checklist::install_missing_pkgs(dir = "./", glob = "*.qmd")
        shell: Rscript {0}
        
      - name: Install NHSRpostcodetools
        run: |
          remotes::install_github("nhs-r-community/NHSRpostcodetools")
        shell: Rscript {0}
        env:
          GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}

      - name: Install NHSRpopulation
        run: |
          remotes::install_github("nhs-r-community/NHSRpopulation")
        shell: Rscript {0}
        env:
          GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}

      - name: Build site
        run: |
          quarto render
      
      - name: Setup Pages
        uses: actions/configure-pages@v3
      
      - name: Upload artifact
        uses: actions/upload-pages-artifact@v1
        with:
          path: '_book/'
      
      - name: Deploy to GitHub Pages
        id: deployment
        uses: actions/deploy-pages@v1