From 014c6b6227713f2df9e602a970490f2707b31954 Mon Sep 17 00:00:00 2001
From: Hai Nguyen <hainm.comp@gmail.com>
Date: Wed, 4 Dec 2024 13:28:00 -0500
Subject: [PATCH] more

---
 notebooks/trajectory_player.ipynb | 68 +++++++++++++------------------
 1 file changed, 28 insertions(+), 40 deletions(-)

diff --git a/notebooks/trajectory_player.ipynb b/notebooks/trajectory_player.ipynb
index de44ca0d..91c438d4 100644
--- a/notebooks/trajectory_player.ipynb
+++ b/notebooks/trajectory_player.ipynb
@@ -8,7 +8,7 @@
     {
      "data": {
       "application/vnd.jupyter.widget-view+json": {
-       "model_id": "13fe7a0340e640caac615d7c098176a3",
+       "model_id": "3de104bc16ba4fdba33696d94704831c",
        "version_major": 2,
        "version_minor": 0
       },
@@ -20,7 +20,7 @@
     {
      "data": {
       "application/vnd.jupyter.widget-view+json": {
-       "model_id": "747cd969ad49416694cd336d3e99806f",
+       "model_id": "c32624f79dc1454e97a7b79f474f9dd1",
        "version_major": 2,
        "version_minor": 0
       },
@@ -55,16 +55,24 @@
   },
   {
    "cell_type": "code",
-   "execution_count": null,
+   "execution_count": 2,
    "metadata": {},
-   "outputs": [],
+   "outputs": [
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "frame_range is not provided. Do not serialize coordinates. Default to use current frame.\n"
+     ]
+    }
+   ],
    "source": [
     "nv.write_html('index.html', view)"
    ]
   },
   {
    "cell_type": "code",
-   "execution_count": null,
+   "execution_count": 3,
    "metadata": {},
    "outputs": [],
    "source": [
@@ -73,7 +81,7 @@
   },
   {
    "cell_type": "code",
-   "execution_count": null,
+   "execution_count": 4,
    "metadata": {},
    "outputs": [],
    "source": [
@@ -82,7 +90,7 @@
   },
   {
    "cell_type": "code",
-   "execution_count": null,
+   "execution_count": 5,
    "metadata": {},
    "outputs": [],
    "source": [
@@ -98,25 +106,13 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 1,
+   "execution_count": 6,
    "metadata": {},
    "outputs": [
     {
      "data": {
       "application/vnd.jupyter.widget-view+json": {
-       "model_id": "9169c19f8f55401bae1667d0b37c1166",
-       "version_major": 2,
-       "version_minor": 0
-      },
-      "text/plain": []
-     },
-     "metadata": {},
-     "output_type": "display_data"
-    },
-    {
-     "data": {
-      "application/vnd.jupyter.widget-view+json": {
-       "model_id": "b773c0465d4f4b28bf1fca34861ac8ff",
+       "model_id": "739b42afb8224eca83241b55d30f8eec",
        "version_major": 2,
        "version_minor": 0
       },
@@ -124,9 +120,8 @@
        "MolstarView()"
       ]
      },
-     "execution_count": 1,
      "metadata": {},
-     "output_type": "execute_result"
+     "output_type": "display_data"
     }
    ],
    "source": [
@@ -146,34 +141,27 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 6,
+   "execution_count": 8,
    "metadata": {},
    "outputs": [],
    "source": [
-    "params = {\n",
-    "    \"type\": \"spacefill\",\n",
-    "    \"typeParams\": { \"sizeFactor\": 0.5 },\n",
-    "    \"color\": \"hydrophobicity\",\n",
-    "    \"colorParams\": { \"scale\": \"DGwoct\" },\n",
-    "}\n",
-    "view._remote_call(\"addRepresentation\", args=[params, 0])"
+    "view.add_trajectory(traj)"
    ]
   },
   {
    "cell_type": "code",
-   "execution_count": 2,
+   "execution_count": 9,
    "metadata": {},
    "outputs": [],
    "source": [
-    "view.add_trajectory(traj)"
+    "params = {\n",
+    "    \"type\": \"spacefill\",\n",
+    "    \"typeParams\": { \"sizeFactor\": 0.5 },\n",
+    "    \"color\": \"hydrophobicity\",\n",
+    "    \"colorParams\": { \"scale\": \"DGwoct\" },\n",
+    "}\n",
+    "view._remote_call(\"addRepresentation\", args=[params, 0])"
    ]
-  },
-  {
-   "cell_type": "code",
-   "execution_count": null,
-   "metadata": {},
-   "outputs": [],
-   "source": []
   }
  ],
  "metadata": {