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ONCOLINER project as a part of EUCANCan has main 3 tools for harmonisation, assessment and improvement of somatic variant callers. All the tools can be used one another or standalone. I am thinking about adding harmonization (which is variant-extractor normalize step) and assessment for benchmarking and last step can also be added merging all the input files given. Could be a nice feature.
Description of feature
ONCOLINER project as a part of EUCANCan has main 3 tools for harmonisation, assessment and improvement of somatic variant callers. All the tools can be used one another or standalone. I am thinking about adding harmonization (which is variant-extractor normalize step) and assessment for benchmarking and last step can also be added merging all the input files given. Could be a nice feature.
https://github.com/EUCANCan/oncoliner/blob/main/modules/oncoliner_assessment/example/example_main.sh
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