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add oncoliner tools #89

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kubranarci opened this issue Sep 25, 2024 · 0 comments
Open

add oncoliner tools #89

kubranarci opened this issue Sep 25, 2024 · 0 comments
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enhancement New feature or request not urgent

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@kubranarci
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Description of feature

ONCOLINER project as a part of EUCANCan has main 3 tools for harmonisation, assessment and improvement of somatic variant callers. All the tools can be used one another or standalone. I am thinking about adding harmonization (which is variant-extractor normalize step) and assessment for benchmarking and last step can also be added merging all the input files given. Could be a nice feature.

https://github.com/EUCANCan/oncoliner/blob/main/modules/oncoliner_assessment/example/example_main.sh

@kubranarci kubranarci added the enhancement New feature or request label Sep 25, 2024
@kubranarci kubranarci self-assigned this Oct 14, 2024
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enhancement New feature or request not urgent
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