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question regarding computational power #1724

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mggrami opened this issue Nov 4, 2024 · 1 comment
Open

question regarding computational power #1724

mggrami opened this issue Nov 4, 2024 · 1 comment

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@mggrami
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mggrami commented Nov 4, 2024

I have a question regarding computational power. I'd like to know how much RAM is sufficient to run each tool in sarek pipeline.
I am analyzing exome derived from cancerous cell lines using typical command running in a docker. I was only able to run preprocessing and strelka with 34 GB RAM, any other tool employed for a job was halted due to insufficient amount of RAM.

Sincerely,
Michał
@allyssonallan
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@mggrami you can check the default sarek resources for each step using nextflow config sarek.

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@allyssonallan @mggrami