diff --git a/tests/test_normalize_vcfs.yml b/tests/test_normalize_vcfs.yml index 71cb59a64..5a1f5413d 100644 --- a/tests/test_normalize_vcfs.yml +++ b/tests/test_normalize_vcfs.yml @@ -1,5 +1,5 @@ - name: Run all variant callers and check for existence of normalized vcf-files - command: nextflow run main.nf -profile test,docker --input ./tests/csv/3.0/mapped_joint_bam.csv --normalize_vcfs --tools deepvariant,freebayes,haplotypecaller,manta,mpileup,strelka,tiddit --step variant_calling --outdir results + command: nextflow run main.nf -profile test --input ./tests/csv/3.0/mapped_joint_bam.csv --normalize_vcfs --tools deepvariant,freebayes,haplotypecaller,manta,mpileup,strelka,tiddit --step variant_calling --outdir results tags: - normalize_vcfs files: