diff --git a/conf/modules.config b/conf/modules.config index f969491..dc1a4c8 100644 --- a/conf/modules.config +++ b/conf/modules.config @@ -38,6 +38,10 @@ process { ext.args = { "--reverse -m${params.last_split_mismap}" } } + withName: 'LAST_TRAIN' { + ext.args = { "--revsym ${params.lastal_args}" } + } + withName: 'LAST_LASTAL_M2O' { ext.prefix = { "${meta.id}.m2o_aln" } ext.args = { "--split-f=MAF+ ${params.lastal_args} ${params.lastal_extr_args}" }