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perserve the qc pdf from hic pro #118

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yinshiyi opened this issue Feb 9, 2022 · 0 comments
Open

perserve the qc pdf from hic pro #118

yinshiyi opened this issue Feb 9, 2022 · 0 comments
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enhancement New feature or request

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@yinshiyi
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yinshiyi commented Feb 9, 2022

hicpro give five pdf for QC metrics, those added to 100% of the reads, so users know exact where reads go, eg. pairs with singleton
see my attached examples.
image
image

The nextflow pipeline have a multiqc output, but the total reads, does not add up, it is confusing where the reads got filtered out. see my attached examples.
image
image

in the hic pro portion, simply preserve the five pdf will help users like me a lot
@yinshiyi yinshiyi added the enhancement New feature or request label Feb 9, 2022
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