From 80a221f189d01d58d396ad9a08f3b09bd4a9bcc3 Mon Sep 17 00:00:00 2001 From: Victor Lin <13424970+victorlin@users.noreply.github.com> Date: Wed, 1 Nov 2023 17:25:47 -0700 Subject: [PATCH 1/2] Update mpox repo name Related-to: --- .github/workflows/ci.yaml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/.github/workflows/ci.yaml b/.github/workflows/ci.yaml index fc8e051..d52a4a7 100644 --- a/.github/workflows/ci.yaml +++ b/.github/workflows/ci.yaml @@ -128,7 +128,7 @@ jobs: - { pathogen: avian-flu, build-args: auspice/flu_avian_h5n1_ha.json } - { pathogen: ebola } - { pathogen: lassa } - - { pathogen: monkeypox } + - { pathogen: mpox } - { pathogen: mumps } - { pathogen: ncov, build-args: all_regions -j 2 --profile nextstrain_profiles/nextstrain-ci } - { pathogen: rsv } From f259d68daa8109665d03f327a764fd72e311ad8e Mon Sep 17 00:00:00 2001 From: Victor Lin <13424970+victorlin@users.noreply.github.com> Date: Wed, 1 Nov 2023 17:26:27 -0700 Subject: [PATCH 2/2] Temporarily disable monkeypox CI Reasoning is the same as in https://github.com/nextstrain/augur/commit/5aba7ec9b3b1c3c676c3f2b850d1148061de7340. --- .github/workflows/ci.yaml | 4 +++- 1 file changed, 3 insertions(+), 1 deletion(-) diff --git a/.github/workflows/ci.yaml b/.github/workflows/ci.yaml index d52a4a7..c92c449 100644 --- a/.github/workflows/ci.yaml +++ b/.github/workflows/ci.yaml @@ -128,7 +128,9 @@ jobs: - { pathogen: avian-flu, build-args: auspice/flu_avian_h5n1_ha.json } - { pathogen: ebola } - { pathogen: lassa } - - { pathogen: mpox } + # Disable mpox CI until pathogen-repo-ci supports custom build directories + # TODO: Re-enable once issue is resolved: https://github.com/nextstrain/.github/issues/63 + # - { pathogen: mpox } - { pathogen: mumps } - { pathogen: ncov, build-args: all_regions -j 2 --profile nextstrain_profiles/nextstrain-ci } - { pathogen: rsv }