diff --git a/docs/hello_nextflow/09_hello_nf-core.md b/docs/hello_nextflow/09_hello_nf-core.md index ea05ac34..b2531ebe 100644 --- a/docs/hello_nextflow/09_hello_nf-core.md +++ b/docs/hello_nextflow/09_hello_nf-core.md @@ -1045,7 +1045,7 @@ Lastly, `sample` is information about the files that we want to attach and pass This sets the key name as `id` and the value that is in the `sample` column, for example `SAMPLE1_PE`: -```console title=meta +```console title="meta" [id: SAMPLE1_PE] ``` @@ -1092,7 +1092,7 @@ nextflow run . -profile docker,test --outdir results The meta map now has a new key `sequencer`, that is empty because we did not specify a value yet: -```console title="Output" +```console title="output" [['id':'SAMPLE1_PE', 'sequencer':[], 'single_end':false], ... ] [['id':'SAMPLE2_PE', 'sequencer':[], 'single_end':false], ... ] [['id':'SAMPLE3_SE', 'sequencer':[], 'single_end':true], ... ] @@ -1104,9 +1104,9 @@ We have also prepared a new samplesheet, that has the `sequencer` column. You ca nextflow run . -profile docker,test --outdir results --input ../data/sequencer_samplesheet.csv ``` -This populates the `sequencer` and we could access it in the pipeline: +This populates the `sequencer` and we can see it in the pipeline, when `view`ing the samplesheet channel: -```console +```console title="output" [['id':'SAMPLE1_PE', 'sequencer':'sequencer1', 'single_end':false], ... ] [['id':'SAMPLE2_PE', 'sequencer':'sequencer2', 'single_end':false], ... ] [['id':'SAMPLE3_SE', 'sequencer':'sequencer3', 'single_end':true], ... ]