Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Non-informative message for file-path format that should be file-path-pattern #67

Closed
toniher opened this issue Oct 23, 2024 · 1 comment
Labels
bug Something isn't working enhancement New feature or request

Comments

@toniher
Copy link

toniher commented Oct 23, 2024

I was unable to validate a parameter that was denied as file-path and should be file-path-pattern instead. Example that needed to be changed:

        "genomes": {
          "type": "string",
          "description": "Path to fasta genome files",
          "format": "file-path",
          "default": "./test/GENOMES/*_gDNA-subsetted.fasta.gz"
        },
d'oct.-23 12:32:26.733 [main] DEBUG nextflow.Session - Session aborted -- Cause: No signature of method: java.util.LinkedList.getFileSystem() is applicable for argument types: () values: []
d'oct.-23 12:32:26.747 [main] ERROR nextflow.cli.Launcher - @unknown
@nvnieuwk nvnieuwk added bug Something isn't working enhancement New feature or request labels Oct 23, 2024
@nvnieuwk
Copy link
Collaborator

Added in #73

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
bug Something isn't working enhancement New feature or request
Projects
None yet
Development

No branches or pull requests

2 participants