index.rst

NEURON Python documentation

(Switch to HOC documentation)

Quick Links

• :ref:`genindex`

• Commonly used:

  :class:`Deck`, File, Glyph, Graph, GUIMath, List, Matrix, Pointer, PtrVector, PWManager, Random, StringFunctions, SymChooser, TextEditor, Timer, ValueFieldEditor, :class:`VBox`, Vector

  BBSaveState, CVode, :class:`FInitializeHandler`, Impedance, KSChan, LinearMechanism, MechanismStandard, MechanismType, NetCon, ParallelContext, ParallelNetManager, PlotShape, Python, RangeVarPlot, SaveState, SectionBrowser, SectionList, SectionRef, Shape, StateTransitionEvent

  :ref:`panel`, :ref:`funfit`, :ref:`geometry`, :ref:`printf_doc`, :ref:`ockeywor`, :ref:`math`, :ref:`nmodl2`, :ref:`nmodl`, :ref:`mech`, :ref:`predec`, :ref:`standardruntools`, :ref:`ocsyntax`, :ref:`topology`

  :ref:`neuron_rxd`

Basic Programming

.. toctree::
    :maxdepth: 1

    NEURON Python tutorial <https://neuronsimulator.github.io/nrn/tutorials/scripting-neuron-basics.html>
    programming/hoc.rst
    programming/mathematics.rst
    programming/strings.rst
    programming/guidesign.rst
    programming/references.rst
    programming/timer.rst
    programming/system.rst
    programming/errors.rst
    programming/dynamiccode.rst
    programming/projectmanagement.rst
    programming/internals.rst

Model Specification

.. toctree::
    :maxdepth: 1

    modelspec/guitools.rst
    modelspec/programmatic.rst

Simulation Control

.. toctree::
    :maxdepth: 1

    simctrl/programmatic.rst
    simctrl/stdrun.rst
    compilationoptions.rst
    envvariables.rst
    simctrl/interpretermanagement.rst

Visualization

.. toctree::
    :maxdepth: 1

    visualization/glyph.rst
    visualization/graph.rst
    visualization/grapher.rst
    visualization/plotshapeclass.rst
    visualization/plotshape.rst
    visualization/rvarplt.rst
    visualization/shape.rst
    visualization/notify.rst
    visualization/gui.rst
    visualization/shapebox.rst
    visualization/oldgrph.rst

Analysis

.. toctree::
    :maxdepth: 1

    analysis/programmatic.rst
    analysis/guitools.rst