From 30530bd30726a60a8720e76250da92e9146b5b83 Mon Sep 17 00:00:00 2001
From: JCGoran <JCGoran@users.noreply.github.com>
Date: Wed, 13 Nov 2024 16:17:04 +0100
Subject: [PATCH] Fixes for RNG, part 1 (#137)

Fixes for the following models:

32992 180373 151731 147757 155602 189347 112685 139150 232097 168314 257027 157157 2015410 106551 128559 105507 127021 183300 51781 149739 137259 185513 119283 126640
---
 modeldb/modeldb-run.yaml | 39 +++++++++++++++++++++++++++++++++++++--
 1 file changed, 37 insertions(+), 2 deletions(-)

diff --git a/modeldb/modeldb-run.yaml b/modeldb/modeldb-run.yaml
index ab3d096..5207bf3 100644
--- a/modeldb/modeldb-run.yaml
+++ b/modeldb/modeldb-run.yaml
@@ -380,6 +380,7 @@
     - fig1a()
     - verify_graph_()
 32992:
+    github: 'pull/1'
     run:
     - verify_graph_()
     script:
@@ -442,6 +443,7 @@
     - run()
     - verify_graph_()
 51781:
+    github: 'pull/3'
     run:
     - load_file("testnet.hoc")
     - verify_graph_()
@@ -617,6 +619,7 @@
     - run()
     - verify_graph_()
 180373:
+    github: 'pull/1'
     model_dir: simulationcode
     run:
     - run()
@@ -782,6 +785,7 @@
     - run()
     - verify_graph_()
 105507:
+    github: 'pull/4'
     run:
     - load_file("batch_.hoc")
     - verify_graph_()
@@ -798,6 +802,7 @@
       - pattern: '\s*\^\s*'
         repl: ''
 106551:
+    github: 'pull/2'
     run:
     - use_mcell_ran4(1)
     - tstop=10
@@ -859,6 +864,7 @@
     - runiv()
     - verify_graph_()
 112685:
+    github: 'pull/3'
     run:
     - run()
     - verify_graph_()
@@ -1039,6 +1045,7 @@
     - run()
     - verify_graph_()
 119283:
+    github: 'pull/1'
     run:
     - use_mcell_ran4(1)
     - runi()
@@ -1289,6 +1296,7 @@
     - iconv -f ISO-8859-1 -t UTF-8 init_ClmIPSCs_GC.hoc.iconv.bak > init_ClmIPSCs_GC.hoc
     - sed -i'.bak' -e 's#ropen(#// ropen(#g;s#rseed = fscan()#rseed=424242#g' init_ClmIPSCs_GC.hoc
 149739:
+    github: 'pull/3'
     run:
     - verify_graph_()
     script:
@@ -1351,6 +1359,7 @@
 168310:
     model_dir: experiment
 168314:
+    github: 'pull/1'
     script:
     # fixup for case-sensitive filesystems
     - sed -i'.bak' 's#path = "./inputs/"#path = "./Inputs/"#g' ReadExperiments.hoc
@@ -1366,6 +1375,7 @@
     comment: ".mod files do not compile"
     skip: true
 183300:
+    github: 'pull/2'
     # Arbitrarily ignoring .mod files under early_theta_version/
     model_dir: "."
 183718:
@@ -1403,6 +1413,7 @@
     # guessed from mosinit.hoc, there are other options
     model_dir: "01_Soma-dendritic_recordings/01_Control/140311-C1/syncytium/num10"
 189347:
+    github: 'pull/1'
     script:
     # we launch with special so don't try and dlopen mechanisms too
     - sed -i'.bak' 's#nrn_load_dll#// nrn_load_dll#g' main.hoc
@@ -1444,6 +1455,7 @@
     # README suggests all should be included
     model_dir: "mechanisms/Event_stream;mechanisms/Golgi_CL;mechanisms/Granule_CL;mechanisms/Presynaptic_spike_generator;mechanisms/Synapses;mechanisms/gap"
 232097:
+    github: 'pull/2'
     script:
     - mkdir connection input
     curate_patterns:
@@ -1708,6 +1720,7 @@
     script:
     - sed -i'.bak' -e 's/tstop=/tstop=100 \/\//' Start.hoc
 157157:
+    github: 'pull/3'
     run:
     - run()
     - verify_graph_()
@@ -1886,7 +1899,7 @@
 266498:
     model_dir: 'MultiCompartmentModels/Mod'
 266578:
-    github: 'pull/2'
+    github: 'pull/3'
 33728:
     github: 'pull/1'
 2014832:
@@ -1903,5 +1916,27 @@
 2016662:
   skip: true
   comment: "Not on GitHub and dirs contain spaces"
+139150:
+  github: 'pull/1'
+185513:
+  github: 'pull/3'
+151731:
+  github: 'pull/1'
+147757:
+  github: 'pull/1'
+155602:
+  github: 'pull/3'
+257027:
+  github: 'pull/1'
+2015410:
+  github: 'pull/1'
+128559:
+  github: 'pull/1'
+127021:
+  github: 'pull/3'
+137259:
+  github: 'pull/1'
+126640:
+  github: 'pull/1'
 184732:
-  github: 'pull/2'
+  github: 'pull/2'
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