.travis.yml

# R for travis: see documentation at https://docs.travis-ci.com/user/languages/r

language: r
r: bioc-release
cache: packages
warnings_are_errors: false
use_bioc: true
bioc_required: true
cran: http://cran.rstudio.com

bioc_packages:
  - graph
  - Rgraphviz

os:
- linux
- osx
osx_image: xcode9.4
r:
- release
- devel
matrix:
  allow_failures:
  - r: devel
env:
  global:
  - R_BUILD_ARGS="--no-manual"
  - R_CHECK_ARGS="--as-cran --install-args=--build"

#before_cache: Rscript -e 'remotes::install_cran("pkgdown")'
#deploy:
#  provider: script
#  script: Rscript -e 'pkgdown::deploy_site_github()'
#  skip_cleanup: true

r_github_packages:
  - r-lib/covr
after_success:
- if [[ "${TRAVIS_OS_NAME}" == "linux" && ${TRAVIS_R_VERSION_STRING} = "release" ]];
  then echo 'covr::codecov(type = "all", quiet = FALSE)' > neuroc_covr.R ; travis_wait
  100 Rscript neuroc_covr.R ; rm neuroc_covr.R ; fi
before_deploy:
- if [ "$TRAVIS_OS_NAME" = "osx" ]; then PKG_TARBALL=$(ls -1t *.tgz | head -n 1);
  PKG_TARBALL_WITH_R=`echo $PKG_TARBALL | sed 's/.tgz/_'"R${rver}"'.tgz/'` ; mv ${PKG_TARBALL}
  ${PKG_TARBALL_WITH_R} ; echo "Built tarball is ${PKG_TARBALL_WITH_R}" ; fi
- if [ "$TRAVIS_OS_NAME" = "linux" ]; then PKG_TARBALL=$(ls -1t *.tar.gz | head -n
  1); PKG_TARBALL_WITH_R=`echo $PKG_TARBALL | sed 's/.tar.gz/_'"R${rver}"'.tar.gz/'`
  ; mv ${PKG_TARBALL} ${PKG_TARBALL_WITH_R} ; echo "Built tarball is ${PKG_TARBALL_WITH_R}"
  ; fi
- if [[ "${TRAVIS_OS_NAME}" = "osx" ]]; then rm -f *.tar.gz; fi