NAMESPACE

# Generated by roxygen2: do not edit by hand

export(bam_to)
export(bed_to)
export(call_peaks)
export(condense_granges)
export(construct_searches)
export(create_trackhub)
export(dt_to_granges)
export(example_bam)
export(example_bg_bw)
export(filter_chrom)
export(find_links)
export(get_genome)
export(import_peaks)
export(liftover_grlist)
export(merge_bam)
export(peaks_metadata_encode)
export(pooled_peaks)
export(search_annotationhub)
export(search_encode)
export(search_roadmap)
export(translate_genome)
importFrom(AnnotationHub,AnnotationHub)
importFrom(AnnotationHub,query)
importFrom(BiocGenerics,"%in%")
importFrom(GEOquery,getGEOSuppFiles)
importFrom(GenomeInfoDb,mapGenomeBuilds)
importFrom(GenomeInfoDb,seqlevelsInUse)
importFrom(GenomeInfoDb,seqlevelsStyle)
importFrom(GenomeInfoDb,seqnames)
importFrom(GenomeInfoDb,sortSeqlevels)
importFrom(GenomicRanges,GRanges)
importFrom(GenomicRanges,GRangesList)
importFrom(GenomicRanges,coverage)
importFrom(GenomicRanges,elementMetadata)
importFrom(GenomicRanges,end)
importFrom(GenomicRanges,makeGRangesFromDataFrame)
importFrom(GenomicRanges,mcols)
importFrom(GenomicRanges,resize)
importFrom(GenomicRanges,seqnames)
importFrom(GenomicRanges,start)
importFrom(GenomicRanges,trim)
importFrom(MACSr,bdgpeakcall)
importFrom(MACSr,callpeak)
importFrom(R.utils,gunzip)
importFrom(R.utils,isGzipped)
importFrom(Rsamtools,mergeBam)
importFrom(data.table,":=")
importFrom(data.table,.SD)
importFrom(data.table,dcast)
importFrom(data.table,fread)
importFrom(data.table,setnames)
importFrom(echoconda,cmd_print)
importFrom(echoconda,find_packages)
importFrom(echoconda,yaml_to_env)
importFrom(httr,config)
importFrom(httr,set_config)
importFrom(methods,is)
importFrom(methods,new)
importFrom(parallel,mclapply)
importFrom(regioneR,filterChromosomes)
importFrom(regioneR,getGenome)
importFrom(rtracklayer,export)
importFrom(rtracklayer,export.bedGraph)
importFrom(rtracklayer,export.bw)
importFrom(rtracklayer,import)
importFrom(rtracklayer,import.bed)
importFrom(rtracklayer,import.bedGraph)
importFrom(rtracklayer,import.bw)
importFrom(rtracklayer,liftOver)
importFrom(stats,median)
importFrom(stats,setNames)
importFrom(stringr,str_sort)
importFrom(stringr,str_to_sentence)
importFrom(tools,R_user_dir)
importFrom(utils,capture.output)
importFrom(utils,data)
importFrom(utils,download.file)
importFrom(utils,tail)