Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

nb_vocab.ttl file is missing classes in current data model #88

Closed
Tracked by #167
alyssadai opened this issue Oct 10, 2024 · 1 comment · Fixed by #89
Closed
Tracked by #167

nb_vocab.ttl file is missing classes in current data model #88

alyssadai opened this issue Oct 10, 2024 · 1 comment · Fixed by #89
Assignees
@alyssadai
Labels
released This issue/pull request has been released.

Comments

@alyssadai
Copy link
Contributor

We have not regenerated the Neurobagel vocab file after recent-ish updates to the data model including the imaging/phenotypic session split, and addition of pipeline-related attributes in neurobagel/bagel-cli#347.

As a result, even if JSONLD files generated using this new data model are uploaded to a graph, the Neurobagel APIs cannot successfully fetch instances of the new classes because it does not know about their class relationships yet.

Steps to resolve

  • Regenerate nb_vocab.ttl using the latest models.py in bagel-cli
@alyssadai alyssadai self-assigned this Oct 10, 2024
@alyssadai alyssadai moved this to Implement - Active in Neurobagel Oct 10, 2024
@alyssadai alyssadai mentioned this issue Oct 11, 2024
Merged
7 tasks
@alyssadai alyssadai moved this from Implement - Active to Implement - Done in Neurobagel Oct 11, 2024
@alyssadai alyssadai mentioned this issue Oct 11, 2024
Closed
23 tasks
@github-project-automation github-project-automation bot moved this from Review - Active to Review - Done in Neurobagel Oct 15, 2024
@neurobagel-bot Neurobagel Bot
Copy link
Contributor

🚀 Issue was released in v0.3.0 🚀

@neurobagel-bot neurobagel-bot bot added the released This issue/pull request has been released. label Oct 31, 2024
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Assignees

@alyssadai alyssadai

Labels
released This issue/pull request has been released.
Projects
Neurobagel
Archived in project
Milestone
No milestone
Development

Successfully merging a pull request may close this issue.

[FIX] Update nb_vocab.ttl with imaging/phenotypic sessions and pipeline classes neurobagel/recipes
1 participant
@alyssadai