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Update code snippet for dataget #431

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surchs opened this issue Jan 8, 2025 · 0 comments · May be fixed by #435
Open

Update code snippet for dataget #431

surchs opened this issue Jan 8, 2025 · 0 comments · May be fixed by #435
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@surchs
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quick fix Minimal planning and/or implementation work required.

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@surchs
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surchs commented Jan 8, 2025 •
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Should include -u flag to change user to current user

Change it to

docker run -t -u $(id -u):$(id -g) -v $(pwd):/data neurobagel/dataget:latest /data/neurobagel-query-results.tsv /data/output

this should work
@surchs surchs mentioned this issue Jan 8, 2025
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@alyssadai alyssadai added the flag:schedule Flag issue that should go on the roadmap or backlog. label Jan 9, 2025
@surchs surchs moved this to Backlog in Neurobagel Jan 9, 2025
@surchs surchs removed the flag:schedule Flag issue that should go on the roadmap or backlog. label Jan 9, 2025
@surchs surchs moved this from Backlog to Specify - Active in Neurobagel Jan 9, 2025
@rmanaem rmanaem added the quick fix Minimal planning and/or implementation work required. label Jan 10, 2025
@surchs surchs moved this from Specify - Active to Specify - Done in Neurobagel Jan 11, 2025
@surchs surchs moved this from Specify - Done to Implement - Active in Neurobagel Jan 11, 2025
@surchs surchs self-assigned this Jan 11, 2025
@surchs surchs linked a pull request Jan 11, 2025 that will close this issue
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@surchs surchs moved this from Implement - Active to Implement - Done in Neurobagel Jan 11, 2025
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quick fix Minimal planning and/or implementation work required.
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Neurobagel
Status: Implement - Done
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[ENH] Add -u flag to dataget instruction neurobagel/query-tool
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@surchs @alyssadai @rmanaem