From 3a9f354d65fc68e5c58a103b3bdba74bf843ab5c Mon Sep 17 00:00:00 2001
From: andreashorn <mail@andreas-horn.de>
Date: Wed, 4 May 2016 16:08:25 -0400
Subject: [PATCH] amend to last commit

---
 tools/acpc2mni/ea_native2acpc.m | 7 ++++---
 1 file changed, 4 insertions(+), 3 deletions(-)

diff --git a/tools/acpc2mni/ea_native2acpc.m b/tools/acpc2mni/ea_native2acpc.m
index bf978e0d4..c96c36a85 100644
--- a/tools/acpc2mni/ea_native2acpc.m
+++ b/tools/acpc2mni/ea_native2acpc.m
@@ -41,9 +41,10 @@
     
     fidpoints_vox=ea_getfidpoints(fidpoints_mm,tempfile);
     
-    [~,ptname]=fileparts(uidir{pt});
-    options.prefs=ea_prefs(ptname);
-    
+    [options.root,options.patientname]=fileparts(uidir{pt});
+    options.root=[options.root,filesep];
+    options.prefs=ea_prefs(options.patientname);
+    options=ea_assignpretra(options);
     % warp into patient space:
     
     [fpinsub_mm] = ea_map_coords(fidpoints_vox', tempfile, [directory,'y_ea_normparams.nii'], '');