COBRA is out on bioRxiv! #308
soelmicheletti
started this conversation in
Show and tell
Replies: 0 comments
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
-
Our newest method Co-expression Batch Reduction Adjustment (COBRA) is out on bioRxiv!
Leveraging the modularity in gene expression data, COBRA estimates the gene co-expression matrix as a function of sample covariates. COBRA can be applied for batch correction, covariate-specific co-expression analysis, and to study the effect of various parameters on the observed patterns of co-expression.
Feel free to check out the implementations in netZooR v1.5 and netZooPy v0.9.16, as well as the R Tutorial and Python Tutorial to start integrating COBRA in your analyses. For the impatient, we provide an even shorter introduction with minimal examples in our GitHub repo.
Enjoy your reading, and don't hesitate to drop us a line for any constructive discussion.
Beta Was this translation helpful? Give feedback.
All reactions