From e1a9f2b290a89364df79ce0e348654aab024d916 Mon Sep 17 00:00:00 2001 From: Dinindu Senanayake Date: Thu, 16 May 2024 11:14:16 +1200 Subject: [PATCH] configuring environment for Intro to Nextflow workshop --- vars/ondemand-config.yml.example | 11 +++++++++-- 1 file changed, 9 insertions(+), 2 deletions(-) diff --git a/vars/ondemand-config.yml.example b/vars/ondemand-config.yml.example index 477d5cf..cccb312 100644 --- a/vars/ondemand-config.yml.example +++ b/vars/ondemand-config.yml.example @@ -4,7 +4,7 @@ # number of training users num_users_create: 2 # number of trainer users -num_trainers_create: 2 +num_trainers_create: 3 # control plane flavour, usually set to # - "balanced1.2cpu4ram" for testing @@ -23,7 +23,7 @@ cluster_worker_count: 1 worker_flavour: balanced1.8cpu16ram # worker disksize is the size of the drive on the worker node, whichh is used # for pulling the docker images -worker_disksize: 60 +worker_disksize: 40 # apps config # - `k8s_container` should be the container that will be used by the app, usually @@ -93,6 +93,13 @@ ood_apps: enabled: false pre_pull: false + nextflow: + k8s_container: ghcr.io/nesi/training-environment-jupyter-intronextflow-app:v0.1.0 + repo: https://github.com/nesi/training-environment-jupyter-intronextflow-app.git + version: 'v0.1.0' + enabled: true + pre_pull: false + # this is currently required for containers app to run properly (fakeroot) # Note: you should probably set to false unless you are running a containers workshop enable_privileged_pods: false