diff --git a/.github/workflows/lint.yml b/.github/workflows/lint.yml new file mode 100644 index 0000000..24354e3 --- /dev/null +++ b/.github/workflows/lint.yml @@ -0,0 +1,34 @@ +name: lint +on: [push] + +# https://stackoverflow.com/a/72408109 +concurrency: + group: ${{ github.workflow }}-${{ github.event.pull_request.number || github.ref }} + cancel-in-progress: true + +jobs: + lint: + runs-on: ubuntu-latest + name: lint + steps: + - uses: actions/checkout@v2 + + - name: Create conda environment + uses: mamba-org/provision-with-micromamba@main + with: + environment-file: environment.yml + environment-name: deidentify + cache-env: true + + - name: Install dev dependencies + shell: bash -l {0} + run: | + micromamba activate deidentify + pip install -r requirements-dev.txt + pip install -e . + + - name: Run lint + shell: bash -l {0} + run: | + micromamba activate deidentify + make lintci diff --git a/.github/workflows/test.yml b/.github/workflows/test.yml new file mode 100644 index 0000000..de58cff --- /dev/null +++ b/.github/workflows/test.yml @@ -0,0 +1,56 @@ +name: test +on: [push] + +# https://stackoverflow.com/a/72408109 +concurrency: + group: ${{ github.workflow }}-${{ github.event.pull_request.number || github.ref }} + cancel-in-progress: true + +jobs: + test: + runs-on: ubuntu-latest + name: test + steps: + - uses: actions/checkout@v2 + + - name: Create conda environment + uses: mamba-org/provision-with-micromamba@main + with: + environment-file: environment.yml + environment-name: deidentify + cache-env: true + + - name: Install dev dependencies + shell: bash -l {0} + run: | + micromamba activate deidentify + pip install -r requirements-dev.txt + pip install -e . + + - name: Run tests + shell: bash -l {0} + run: | + micromamba activate deidentify + make test + + integration: + runs-on: ubuntu-latest + strategy: + matrix: + python-version: ["3.7", "3.8", "3.9"] + + steps: + - uses: actions/checkout@v4 + - name: Set up Python ${{ matrix.python-version }} + uses: actions/setup-python@v4 + with: + python-version: ${{ matrix.python-version }} + + - name: Run demo + shell: bash -l {0} + run: | + sudo apt-get install -y locales + sudo locale-gen nl_NL.UTF-8 de_DE.UTF-8 + pip install -e . --progress-bar off + python -m spacy download nl_core_news_sm + python demo.py