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Irreproducible Discovery Rate (IDR) for 3 replicates #63

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lipc20052006 opened this issue Nov 30, 2022 · 3 comments
Open

Irreproducible Discovery Rate (IDR) for 3 replicates #63

lipc20052006 opened this issue Nov 30, 2022 · 3 comments

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@lipc20052006
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Hello, I was trying to measure the reproducibility of the 3 set of peaks identified from three replicates. And noticing the "Irreproducible discovery rate (IDR)" maybe only suitable for 2 sets of peaks. How to check the reproducibility among three replicates? Thank you very much

@wangxu1990
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I am also curious about this issue, anyone can help?

@CHENyiru3
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Do you solve this problem now? Thank u!

@jjp55
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jjp55 commented Jul 18, 2024

This seems to be a problem that has persisted for a few years. There are some recommendations in the issue thread linked below.

#35

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4 participants