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28 Open 16 Closed
28 Open 16 Closed
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Issues list

Single cell data and spatial data matching requirement
#44 opened Dec 3, 2024 by Chrisdoan9
Using Celltrek on non-matching data ST and SC data.
#42 opened May 27, 2024 by Dillon214
[Question] Is it possible to superimpose a network on spatial image?
#41 opened May 16, 2024 by MatteoRiva95
Error: package or namespace load failed for ‘CellTrek’
#40 opened Mar 26, 2024 by Jia-Shen-1212
Error in rownames(st_data[[st_assay]]@data) : no slot of name "data" for this object of class "Assay5", Possible Seurat v5.0 error
#39 opened Dec 28, 2023 by tsoruu
8
ERROR
#38 opened Dec 16, 2023 by haitianyisee
1
celltrek_vis Error
#37 opened Dec 13, 2023 by a365485265
Errors in CellTrek::traint on example data from README
#36 opened Nov 3, 2023 by katherine-benjamin
3
Customized Plot
#34 opened Sep 22, 2023 by awesomedeer
Normalization methods
#33 opened Sep 21, 2023 by awesomedeer
Request for cell type annotation of mouse kidney and DCIS1 datasets
#32 opened Sep 21, 2023 by shiy-shiy
Dealing with spatial data with merged samples
#31 opened Jul 26, 2023 by Kennyluo4
Celltrek output to spot and cell mapping
#30 opened Jul 5, 2023 by smk5g5
"Celltrek"_Simualtion dataset
#29 opened May 15, 2023 by 13198910213
lack of single-cell transcriptome data from the same patient
#28 opened May 6, 2023 by ozuoano
1
selection of Edge cut-off threshold for spatial colocalisation of cells
#26 opened Mar 1, 2023 by pratapstat
2
keep raw data in celltrek object
#25 opened Oct 13, 2022 by kguion1
1
celltrek_vis error
#24 opened Oct 12, 2022 by wang0430
1
Error while running CellTrek:celltrek function
#23 opened Oct 4, 2022 by pratapstat
1
Error: 'DT_boot_mst' is not an exported object from 'namespace:CellTrek'
#22 opened Sep 17, 2022 by kaizen89
Assigning all single cells
#21 opened Aug 28, 2022 by cadyyuheng
1
clarification on overall method
#20 opened Aug 12, 2022 by kguion1
2
Error: invalid character indexing
#19 opened Aug 2, 2022 by AteeqMKhaliq
1
Question about Supplementary Figure 7e
#16 opened Jul 5, 2022 by Chuang1118
1
How to keep all the metadata from the seurat traint object after running CellTrek::celltrek()
#15 opened Jul 1, 2022 by AF788
1
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