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minimus2 exited with status:1 #3

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xxz19900 opened this issue Dec 7, 2017 · 2 comments
Open

minimus2 exited with status:1 #3

xxz19900 opened this issue Dec 7, 2017 · 2 comments

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@xxz19900
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xxz19900 commented Dec 7, 2017

minimus2 exited with status: 1

@alienzj
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alienzj commented Mar 13, 2018

!!! 2018-03-12 11:19:17 Doing step 20: Getting overlaps
!!! 2018-03-12 11:19:17 Running: nucmer -maxmatch -c 100 292S_more2kb_contigs_nr.ref.seq 292S_more2kb_contigs_nr.qry.seq -p 292S_more2kb_contigs_nr
1: PREPARING DATA
2,3: RUNNING mummer AND CREATING CLUSTERS
reading input file "292S_more2kb_contigs_nr.ntref" of length 32244835963
construct suffix tree for sequence of length 32244835963
(maximum reference length is 2305843009213693948)
(maximum query length is 18446744073709551615)
process 322448359 characters per dot
file "construct.c", line 878: allocandusespaceviaptr(8,48367253946) failed:not enough memory
ERROR: mummer and/or mgaps returned non-zero
!!! 2018-03-12 12:11:09 Command: nucmer -maxmatch -c 100 292S_more2kb_contigs_nr.ref.seq 292S_more2kb_contigs_nr.qry.seq -p 292S_more2kb_contigs_nr exited with status: 1
!!! END - Elapsed time: 0d 0h 51m 52s

@alienzj
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alienzj commented Mar 13, 2018

30Gb contigs vs 30Gb contigs, how much memory will be used?

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