imaxt-multiscale-plugin.json

{
  "name": "imaxt-multiscale-plugin",
  "display_name": "IMAXT Multiscale Image Napari Plugin",
  "visibility": "public",
  "icon": "",
  "categories": [],
  "schema_version": "0.2.1",
  "on_activate": null,
  "on_deactivate": null,
  "contributions": {
    "commands": [
      {
        "id": "imaxt-multiscale-plugin.get_reader",
        "title": "Open data with IMAXT Multiscale Image Napari Plugin",
        "python_name": "imaxt_multiscale_plugin._reader:napari_get_reader",
        "short_title": null,
        "category": null,
        "icon": null,
        "enablement": null
      },
      {
        "id": "imaxt-multiscale-plugin.write_multiple",
        "title": "Save multi-layer data with IMAXT Multiscale Image Napari Plugin",
        "python_name": "imaxt_multiscale_plugin._writer:write_multiple",
        "short_title": null,
        "category": null,
        "icon": null,
        "enablement": null
      },
      {
        "id": "imaxt-multiscale-plugin.write_single_image",
        "title": "Save image data with IMAXT Multiscale Image Napari Plugin",
        "python_name": "imaxt_multiscale_plugin._writer:write_single_image",
        "short_title": null,
        "category": null,
        "icon": null,
        "enablement": null
      },
      {
        "id": "imaxt-multiscale-plugin.write_screenshot",
        "title": "Save Screenshot",
        "python_name": "imaxt_multiscale_plugin._writer:write_screenshot",
        "short_title": null,
        "category": null,
        "icon": null,
        "enablement": null
      },
      {
        "id": "imaxt-multiscale-plugin.make_qwidget",
        "title": "Utilities Widget",
        "python_name": "imaxt_multiscale_plugin._widget:UtilsQWidget",
        "short_title": null,
        "category": null,
        "icon": null,
        "enablement": null
      }
    ],
    "readers": [
      {
        "command": "imaxt-multiscale-plugin.get_reader",
        "filename_patterns": [
          "*"
        ],
        "accepts_directories": true
      }
    ],
    "writers": [
      {
        "command": "imaxt-multiscale-plugin.write_single_image",
        "layer_types": [
          "image"
        ],
        "filename_extensions": [
          ".npy"
        ],
        "display_name": ""
      },
      {
        "command": "imaxt-multiscale-plugin.write_screenshot",
        "layer_types": [
          "image*",
          "labels*"
        ],
        "filename_extensions": [
          ".tif",
          ".tiff"
        ],
        "display_name": ""
      }
    ],
    "widgets": [
      {
        "command": "imaxt-multiscale-plugin.make_qwidget",
        "display_name": "Utilities Widget",
        "autogenerate": false
      }
    ],
    "sample_data": null,
    "themes": null,
    "menus": {},
    "submenus": null,
    "keybindings": null,
    "configuration": []
  },
  "package_metadata": {
    "metadata_version": "2.1",
    "name": "imaxt-multiscale-plugin",
    "version": "0.3.1",
    "dynamic": null,
    "platform": null,
    "supported_platform": null,
    "summary": "A simple plugin to use with napari",
    "description": "# IMAXT multiscale napari plugin\n\n[![License GNU LGPL v3.0](https://img.shields.io/pypi/l/imaxt-multiscale-plugin.svg?color=green)](https://github.com/eg266/imaxt-multiscale-plugin/raw/main/LICENSE)\n[![PyPI](https://img.shields.io/pypi/v/imaxt-multiscale-plugin.svg?color=green)](https://pypi.org/project/imaxt-multiscale-plugin)\n[![Python Version](https://img.shields.io/pypi/pyversions/imaxt-multiscale-plugin.svg?color=green)](https://python.org)\n[![napari hub](https://img.shields.io/endpoint?url=https://api.napari-hub.org/shields/imaxt-multiscale-plugin)](https://napari-hub.org/plugins/imaxt-multiscale-plugin)\n\nA napari plugin to visualize multi-resolution images created with the IMAXT mosaic pipeline.\n\n----------------------------------------------------\n\n## Installation\n\nYou can install `imaxt-multiscale-plugin` via [pip]:\n\n    pip install imaxt-multiscale-plugin\n\n\n## Usage\n\nRun [napari] with the name of the sample to visualize either a local path:\n\n    napari /storage/imaxt/eglez/processed/stpt/20220606_PDX_AB559_GFP_005503_100x15um\n\nor a sample in S3 storage:\n\n    napari s3://imaxtgw/stpt/20220608_DI_PDX_SA535_Tum_5223_04280_100x15um\n    \n## Screenshots\n\n![Alt text](https://gitlab.developers.cam.ac.uk/astronomy/camcead/imaxt/imaxt-multiscale-plugin/-/raw/main/assets/napari1.png \"a title\")\n![Alt text](https://gitlab.developers.cam.ac.uk/astronomy/camcead/imaxt/imaxt-multiscale-plugin/-/raw/main/assets/napari2.png \"a title\")\n![Alt text](https://gitlab.developers.cam.ac.uk/astronomy/camcead/imaxt/imaxt-multiscale-plugin/-/raw/main/assets/napari3.png \"a title\")\n![Alt text](https://gitlab.developers.cam.ac.uk/astronomy/camcead/imaxt/imaxt-multiscale-plugin/-/raw/main/assets/napari4.png \"a title\")\n\n## Contributing\n\nContributions are very welcome. Tests can be run with [tox], please ensure\nthe coverage at least stays the same before you submit a pull request.\n\n## License\n\nDistributed under the terms of the [GNU LGPL v3.0] license,\n\"imaxt-multiscale-plugin\" is free and open source software\n\n## Issues\n\nIf you encounter any problems, please [file an issue] along with a detailed description.\n\n[napari]: https://github.com/napari/napari\n[Cookiecutter]: https://github.com/audreyr/cookiecutter\n[@napari]: https://github.com/napari\n[MIT]: http://opensource.org/licenses/MIT\n[BSD-3]: http://opensource.org/licenses/BSD-3-Clause\n[GNU GPL v3.0]: http://www.gnu.org/licenses/gpl-3.0.txt\n[GNU LGPL v3.0]: http://www.gnu.org/licenses/lgpl-3.0.txt\n[Apache Software License 2.0]: http://www.apache.org/licenses/LICENSE-2.0\n[Mozilla Public License 2.0]: https://www.mozilla.org/media/MPL/2.0/index.txt\n[cookiecutter-napari-plugin]: https://github.com/napari/cookiecutter-napari-plugin\n\n[napari]: https://github.com/napari/napari\n[tox]: https://tox.readthedocs.io/en/latest/\n[pip]: https://pypi.org/project/pip/\n[PyPI]: https://pypi.org/\n",
    "description_content_type": "text/markdown",
    "keywords": null,
    "home_page": "https://gitlab.developers.cam.ac.uk/astronomy/camcead/imaxt/imaxt-multiscale-plugin",
    "download_url": null,
    "author": "Eduardo Gonzalez Solares",
    "author_email": "E.GonzalezSolares@ast.cam.ac.uk",
    "maintainer": null,
    "maintainer_email": null,
    "license": "LGPL-3.0-only",
    "classifier": [
      "Development Status :: 2 - Pre-Alpha",
      "Framework :: napari",
      "Intended Audience :: Developers",
      "License :: OSI Approved :: GNU Lesser General Public License v3 (LGPLv3)",
      "Operating System :: OS Independent",
      "Programming Language :: Python",
      "Programming Language :: Python :: 3",
      "Programming Language :: Python :: 3 :: Only",
      "Programming Language :: Python :: 3.8",
      "Programming Language :: Python :: 3.9",
      "Programming Language :: Python :: 3.10",
      "Topic :: Software Development :: Testing"
    ],
    "requires_dist": [
      "numpy",
      "magicgui",
      "qtpy",
      "xarray",
      "dask",
      "astropy",
      "zarr",
      "tox ; extra == 'testing'",
      "pytest ; extra == 'testing'",
      "pytest-cov ; extra == 'testing'",
      "pytest-qt ; extra == 'testing'",
      "napari ; extra == 'testing'",
      "pyqt5 ; extra == 'testing'"
    ],
    "requires_python": ">=3.8",
    "requires_external": null,
    "project_url": null,
    "provides_extra": [
      "testing"
    ],
    "provides_dist": null,
    "obsoletes_dist": null
  },
  "npe1_shim": false
}