epicure.json

{
  "name": "epicure",
  "display_name": "EpiCure",
  "visibility": "public",
  "icon": "",
  "categories": [
    "Annotation",
    "Segmentation"
  ],
  "schema_version": "0.2.1",
  "on_activate": null,
  "on_deactivate": null,
  "contributions": {
    "commands": [
      {
        "id": "epicure.start",
        "title": "Start",
        "python_name": "epicure.start_epicuring:start_epicure",
        "short_title": null,
        "category": null,
        "icon": null,
        "enablement": null
      },
      {
        "id": "epicure.concatenate",
        "title": "Concatenate",
        "python_name": "epicure.concatenate_movie:concatenate_movies",
        "short_title": null,
        "category": null,
        "icon": null,
        "enablement": null
      },
      {
        "id": "epicure.doc",
        "title": "Documentation",
        "python_name": "epicure.Utils:show_documentation",
        "short_title": null,
        "category": null,
        "icon": null,
        "enablement": null
      }
    ],
    "readers": null,
    "writers": null,
    "widgets": [
      {
        "command": "epicure.start",
        "display_name": "Start EpiCure",
        "autogenerate": false
      },
      {
        "command": "epicure.concatenate",
        "display_name": "Concatenate EpiCured movies",
        "autogenerate": false
      },
      {
        "command": "epicure.doc",
        "display_name": "Open EpiCure documentation",
        "autogenerate": false
      }
    ],
    "sample_data": null,
    "themes": null,
    "menus": {},
    "submenus": null,
    "keybindings": null,
    "configuration": []
  },
  "package_metadata": {
    "metadata_version": "2.1",
    "name": "epicure",
    "version": "0.1.3",
    "dynamic": null,
    "platform": null,
    "supported_platform": null,
    "summary": "Napari plugin to manually correct epithelia segmentation in movies",
    "description": "# EpiCure\n\n[![License BSD-3](https://img.shields.io/pypi/l/epicure.svg?color=green)](https://gitlab.pasteur.fr/gletort/epicure/raw/main/LICENSE)\n[![PyPI](https://img.shields.io/pypi/v/epicure.svg?color=green)](https://pypi.org/project/epicure)\n[![Python Version](https://img.shields.io/pypi/pyversions/epicure.svg?color=green)](https://python.org)\n[![napari hub](https://img.shields.io/endpoint?url=https://api.napari-hub.org/shields/epicure)](https://napari-hub.org/plugins/epicure)\n\nNapari plugin to manually correct epithelia segmentation in movies\n\n > **Documentation in the [wiki](https://gitlab.pasteur.fr/gletort/epicure/-/wikis/EpiCure)**\n\n## Installation\n\n### Install plugin\nTo install EpiCure on a fresh python virtual environment, type inside the environement:\n```\npip install epicure\n``` \n\nThen launch `Napari`, and the plugin should be visible in the `Plugins` list.\n\nIf you already have an environment with `Napari` installed, you can also install it directly in `Napari>Plugins>Install/Uninstall plugins`\n\n### Install code\nTo have the code to be able to modify it, clone this repository. You can use `pip install -e .` so that everytime you update the code, the plugin will be updated. \n\n## Usage\n\nRefer to the [wiki](https://gitlab.pasteur.fr/gletort/epicure/-/wikis/EpiCure) for documentation of the different steps possible in the pipeline.\n\n\n\nThis [napari] plugin was initialized with [Cookiecutter] using [@napari]'s [cookiecutter-napari-plugin] template.\n\n[napari]: https://github.com/napari/napari\n[Cookiecutter]: https://github.com/audreyr/cookiecutter\n[file an issue]: https://github.com/gletort/epicure/issues\n[tox]: https://tox.readthedocs.io/en/latest/\n[pip]: https://pypi.org/project/pip/\n[PyPI]: https://pypi.org/\n",
    "description_content_type": "text/markdown",
    "keywords": null,
    "home_page": "https://gitlab.pasteur.fr/gletort/epicure",
    "download_url": null,
    "author": "Ga\u00eblle Letort",
    "author_email": null,
    "maintainer": null,
    "maintainer_email": null,
    "license": "BSD-3-Clause",
    "classifier": [
      "Development Status :: 2 - Pre-Alpha",
      "Framework :: napari",
      "Intended Audience :: Developers",
      "License :: OSI Approved :: BSD License",
      "Operating System :: OS Independent",
      "Programming Language :: Python",
      "Programming Language :: Python :: 3",
      "Programming Language :: Python :: 3 :: Only",
      "Programming Language :: Python :: 3.8",
      "Programming Language :: Python :: 3.9",
      "Programming Language :: Python :: 3.10",
      "Topic :: Scientific/Engineering :: Image Processing"
    ],
    "requires_dist": [
      "napari<=0.4.19",
      "numpy",
      "magicgui",
      "qtpy",
      "scikit-image",
      "opencv-python-headless",
      "roifile",
      "xlsxwriter",
      "laptrack",
      "matplotlib",
      "imagecodecs",
      "edt",
      "tox; extra == \"testing\"",
      "pytest; extra == \"testing\"",
      "pytest-cov; extra == \"testing\"",
      "pytest-qt; extra == \"testing\"",
      "napari; extra == \"testing\"",
      "pyqt5; extra == \"testing\""
    ],
    "requires_python": ">=3.8",
    "requires_external": null,
    "project_url": [
      "Bug Tracker, https://gitlab.pasteur.fr/gletort/epicure/issues",
      "Documentation, https://gitlab.pasteur.fr/gletort/epicure#README.md",
      "Source Code, https://gitlab.pasteur.fr/gletort/epicure",
      "User Support, https://gitlab.pasteur.fr/gletort/epicure/issues"
    ],
    "provides_extra": [
      "testing"
    ],
    "provides_dist": null,
    "obsoletes_dist": null
  },
  "npe1_shim": false
}