depalma-napari-omero.json

{
  "name": "depalma-napari-omero",
  "display_name": "De Palma lab",
  "visibility": "public",
  "icon": "",
  "categories": [],
  "schema_version": "0.2.0",
  "on_activate": null,
  "on_deactivate": null,
  "contributions": {
    "commands": [
      {
        "id": "depalma-napari-omero.start",
        "title": "OMERO interface",
        "python_name": "depalma_napari_omero.omero_widget:OMEROWidget",
        "short_title": null,
        "category": null,
        "icon": null,
        "enablement": null
      }
    ],
    "readers": null,
    "writers": null,
    "widgets": [
      {
        "command": "depalma-napari-omero.start",
        "display_name": "OMERO interface",
        "autogenerate": false
      }
    ],
    "sample_data": null,
    "themes": null,
    "menus": {},
    "submenus": null,
    "keybindings": null,
    "configuration": []
  },
  "package_metadata": {
    "metadata_version": "2.1",
    "name": "depalma-napari-omero",
    "version": "0.1.4",
    "dynamic": null,
    "platform": null,
    "supported_platform": null,
    "summary": "Napari interface for the De Palma lab.",
    "description": "![EPFL Center for Imaging logo](https://imaging.epfl.ch/resources/logo-for-gitlab.svg)\n![screenshot](./assets/screenshot.png)\n# De Palma Lab - Center for Imaging (2024)\n\n- TODO\n\n## Installation\n\nFirst, install **Miniconda** by following the instructions: https://docs.conda.io/en/latest/miniconda.html.\n\nThen, start an **Anaconda Prompt** (on Windows, you can find it in the start menu).\n\nSet up a `conda` environment with **Python 3.9**:\n\n```\nconda create -n project-env python=3.9\n```\n\nActivate the environment:\n\n```\nconda activate project-env\n```\n\nOn Windows, the `zeroc-ice` dependency fails to install from `pip`. As a workaround, install it with `conda`:\n\n```\nconda install -c conda-forge zeroc-ice\n```\n\nInstall Napari and the `depalma plugin` from the GitLab repository in the `project-env` environment:\n\n```\npip install git+https://gitlab.com/epfl-center-for-imaging/depalma.git\n```\n\nStart the Napari app with the `depalma` plugin:\n\n```\nnapari -w depalma\n```\n\n## Update the project\n\nTo update the project to the latest version, force the reinstallation of the `depalma` plugin in your environment:\n\n```\npip install --force-reinstall git+https://gitlab.com/epfl-center-for-imaging/depalma.git\n```\n\n## Build with PyApp\n\n```\npython pyapp/build.py\n```\n\n## Related projects\n\n- [JupyterHub (De Palma)](https://gitlab.com/epfl-center-for-imaging/depalma-jupyterhub)\n",
    "description_content_type": "text/markdown",
    "keywords": null,
    "home_page": null,
    "download_url": null,
    "author": null,
    "author_email": "Mallory Wittwer <mallory.wittwer@epfl.ch>",
    "maintainer": null,
    "maintainer_email": null,
    "license": "BSD 3-Clause License\n\nCopyright (c) 2024, EPFL\nAll rights reserved.\n\nRedistribution and use in source and binary forms, with or without\nmodification, are permitted provided that the following conditions are met:\n\n* Redistributions of source code must retain the above copyright notice, this\n  list of conditions and the following disclaimer.\n\n* Redistributions in binary form must reproduce the above copyright notice,\n  this list of conditions and the following disclaimer in the documentation\n  and/or other materials provided with the distribution.\n\n* Neither the name of the copyright holder nor the names of its\n  contributors may be used to endorse or promote products derived from\n  this software without specific prior written permission.\n\nTHIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS \"AS IS\"\nAND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE\nIMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE\nDISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE\nFOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL\nDAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR\nSERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER\nCAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY,\nOR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE\nOF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.",
    "classifier": [
      "Development Status :: 2 - Pre-Alpha",
      "Framework :: napari",
      "License :: OSI Approved :: BSD License",
      "Programming Language :: Python :: 3",
      "Programming Language :: Python :: 3.9",
      "Topic :: Scientific/Engineering :: Image Processing"
    ],
    "requires_dist": [
      "napari[all] >=0.4.16",
      "qtpy",
      "magicgui",
      "napari-label-focus >=0.0.9",
      "napari-remove-objects",
      "mousetumornet",
      "ezomero ==1.1.1",
      "numpy",
      "pandas",
      "trackpy",
      "imagecodecs[all]",
      "tifffile",
      "pooch"
    ],
    "requires_python": "<3.10,>=3.9",
    "requires_external": null,
    "project_url": [
      "homepage, https://github.com/EPFL-Center-for-Imaging/depalma-napari-omero",
      "repository, https://github.com/EPFL-Center-for-Imaging/depalma-napari-omero"
    ],
    "provides_extra": null,
    "provides_dist": null,
    "obsoletes_dist": null
  },
  "npe1_shim": false
}