Fix _toc.yml for real this time?!? (#40)

* fix toc for real? * fix stray python and backticks in spot basics notebook
napari · Oct 14, 2024 · 6993502 · 6993502
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diff --git a/napari-workshops/_toc.yml b/napari-workshops/_toc.yml
@@ -19,7 +19,7 @@ chapters:
   - file: notebooks/segmenting_and_measuring_nuclei_stardist
   - file: notebooks/manual_annotation
   - file: notebooks/custom_colormaps
-  - header: "Alternative Spot Detection Notebooks"
+  - file: notebooks/alternative_notebooks
     sections:
     - file: notebooks/spot_detection_basics
     - file: notebooks/spot_detection_functions

diff --git a/napari-workshops/notebooks/alternative_notebooks.md b/napari-workshops/notebooks/alternative_notebooks.md
@@ -0,0 +1,8 @@
+# Alternative notebooks
+
+There are some alternative notebooks you can use. 
+
+The [spot_detection](spot_detection) notebooks has been reworked into
+two notebooks:
+- [Exploratory analysis: spot detection](spot_detection_basic)
+- [From workflow to widget: customizing napari](spot_detection_functions)
diff --git a/napari-workshops/notebooks/spot_detection_basic.md b/napari-workshops/notebooks/spot_detection_basic.md
@@ -177,12 +177,10 @@ perform the blob detection.
 from skimage.feature import blob_log
 
 # detect the spots on the filtered image
-```python
 blobs_log = blob_log(
     high_passed_spots, max_sigma=3,
     threshold=None,  # use a relative threshold instead
     threshold_rel=0.2)
-```
     
 # convert the output of the blob detector to the 
 # desired points_coords and sizes arrays