! Can't subset .data outside of a data mask context

[ChingWen-Chang]

Dear Ninon,

I encounter an error message when I running bGWAS v1.0.2.. I tried to run your provided data without any modification. However, when I run the below code, there is always an error: ! Can't subset .data outside of a data mask context.

A = bGWAS(name="Test_UsingSmallDataFrame",
GWAS = SmallGWAS_Timmers2019,
prior_studies = MyStudies,
stepwise_threshold = 0.05)

I tried to fix the issue but was unsuccessful. Would you please fix this issue?

Many thanks, 😊
Ching-Wen

Here is the script for the analysis:
A = bGWAS(name="Test_UsingSmallDataFrame",
GWAS = SmallGWAS_Timmers2019,
prior_studies = MyStudies,
stepwise_threshold = 0.05)

and here are the log output:
<<< Estimation of the prior >>>

Creating the full Z-Matrix

Loading the ZMatrix...

Selecting studies :
4 studies
6,811,310 SNPs

Adding data from the conventional GWAS :

"GWAS"
Done!
286,807 SNPs in common between prior studies and the conventional GWAS

Computing prior

Calculating the prior chromosome by chromosome...

Chromosome 1
Running regression,
Calculating prior estimates for SNPs on this chromosome,
Calculating prior standard errors for SNPs on this chromosome,
Error:
! Can't subset .data outside of a data mask context.
Run rlang::last_error() to see where the error occurred.

[PaulTimmers]

I'm using R version 4.1.3 and managed to fix this problem by replacing .data$. to . in the bind_rows functions inside the compute_prior bGWAS function.