unit-tests.yml

name: tests and docs

# branch filtering:
# https://docs.github.com/en/actions/reference/workflow-syntax-for-github-actions#filter-pattern-cheat-sheet

# workflows running on Linux and MacOS have passwordless sudo rights:
# https://stackoverflow.com/questions/57982945/how-to-apt-get-install-in-a-github-actions-workflow

on: push

jobs:
  test:
    name: Run Unit Tests
    runs-on: ubuntu-20.04
    defaults:
      run:
        # pinning the shell name helps to properly set conda
        shell: bash -l {0}
    strategy:
      matrix:
        python-version: [ 3.7, 3.8, 3.9]
    env:
      OMP_NUM_THREADS: 2
    steps:
      - name: Checkout code
        uses: actions/checkout@v2
      - name: Setup conda for Python ${{ matrix.python-version }}
        uses: conda-incubator/setup-miniconda@v2
        with:
          activate-environment: test
          python-version: ${{ matrix.python-version }}
          channels: conda-forge
          allow-softlinks: true
          channel-priority: flexible
          show-channel-urls: true
          use-only-tar-bz2: true
      - name: Print conda config
        run: |
          conda info
          conda list
          conda config --show-sources
          conda config --show
      - name: Install FFTW3
        run: sudo apt-get install libfftw3-dev
      - name: Build and install galario, build docs
        run: |
          conda activate test
          conda install astropy cython nomkl numpy pytest scipy sphinx
          pip install coverage codecov pytest-cov
          mkdir build && cd build
          cmake -DCMAKE_INSTALL_PREFIX=/tmp -DCMAKE_PREFIX_PATH=${CONDA_PREFIX} ..
          make
          make install
      - name: Run unit tests
        run: python/py.test.sh -sv --cov=./ python/test_galario.py
        working-directory: build
      - name: Upload code coverage report
        run: bash <(curl -s https://codecov.io/bash) || echo 'Codecov failed to upload'
      - name: build docs
        run: |
          conda activate test
          pip install sphinx_py3doc_enhanced_theme sphinxcontrib-fulltoc
          cd build
          make docs
      - name: deploy docs
        if: github.ref == 'refs/heads/master' && matrix.python-version == '3.7'
        uses: JamesIves/github-pages-deploy-action@4.1.0
        with:
          branch: gh-pages  # The branch the action should deploy to.
          folder: build/docs/html  # The folder the action should deploy.
          dry-run: false